Wall clock time and date at job start Tue Mar 31 2020 18:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47105 * 2 1 4 4 C 1.34260 * 125.75371 * 125.27232 * 3 2 1 5 5 C 1.38043 * 107.41623 * 180.14039 * 4 3 2 6 6 C 1.47426 * 126.42099 * 179.86654 * 5 4 3 7 7 O 1.21616 * 119.99158 * 359.71337 * 6 5 4 8 8 N 1.34774 * 120.00786 * 179.71199 * 6 5 4 9 9 C 1.46502 * 120.00215 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46804 * 180.02562 * 9 8 6 11 11 C 1.30994 * 119.99826 * 125.27541 * 10 9 8 12 12 C 1.50702 * 120.00204 * 179.71900 * 11 10 9 13 13 N 1.46901 * 109.47213 * 124.99711 * 12 11 10 14 14 C 1.46900 * 110.99893 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.46824 * 180.02562 * 14 13 12 16 16 O 1.21285 * 119.99712 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99574 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99649 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00012 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99963 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99752 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99945 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46995 * 90.00192 * 22 20 18 24 24 H 1.48503 * 109.47032 * 209.99759 * 22 20 18 25 25 H 1.48497 * 109.47096 * 329.99594 * 22 20 18 26 26 C 1.41302 * 107.17092 * 359.60542 * 5 4 3 27 27 N 1.30448 * 108.02053 * 0.24069 * 26 5 4 28 28 H 1.09002 * 109.47006 * 60.00037 * 1 2 3 29 29 H 1.09000 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47203 * 300.00635 * 1 2 3 31 31 H 1.08993 * 109.46730 * 239.99514 * 2 1 3 32 32 H 1.09002 * 109.47006 * 119.99963 * 2 1 3 33 33 H 1.07997 * 126.29434 * 359.97438 * 4 3 2 34 34 H 0.96997 * 119.99865 * 0.02562 * 8 6 5 35 35 H 1.08998 * 109.47066 * 59.99906 * 9 8 6 36 36 H 1.09001 * 109.47002 * 300.00046 * 9 8 6 37 37 H 1.08002 * 119.99761 * 304.99301 * 10 9 8 38 38 H 1.08002 * 120.00350 * 359.72370 * 11 10 9 39 39 H 1.08998 * 109.47600 * 245.00508 * 12 11 10 40 40 H 1.09004 * 109.46937 * 5.00335 * 12 11 10 41 41 H 1.00899 * 110.99557 * 56.04877 * 13 12 11 42 42 H 1.08994 * 109.47121 * 300.00035 * 14 13 12 43 43 H 1.09002 * 109.47039 * 60.00329 * 14 13 12 44 44 H 0.96999 * 120.00487 * 0.02562 * 17 15 14 45 45 H 0.97005 * 119.99525 * 179.97438 * 21 20 18 46 46 H 1.07998 * 125.98573 * 180.20780 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9111 0.8895 5 6 3.0709 3.2310 0.5368 6 6 3.9323 4.2035 1.2336 7 8 4.5500 3.8671 2.2258 8 7 4.0354 5.4652 0.7713 9 6 4.8919 6.4314 1.4634 10 6 4.8309 7.7578 0.7506 11 6 4.5051 8.8415 1.4104 12 6 4.4503 10.1689 0.6990 13 7 3.1282 10.7773 0.8988 14 6 3.0376 12.0755 0.2174 15 6 1.6707 12.6680 0.4449 16 8 0.8528 12.0680 1.1097 17 7 1.3573 13.8645 -0.0904 18 6 0.1137 14.4033 0.1161 19 1 -0.6147 13.8691 0.7081 20 6 -0.2097 15.6366 -0.4362 21 7 0.6765 16.2863 -1.1570 22 14 -1.9039 16.3710 -0.1542 23 1 -1.8836 17.2053 1.0742 24 1 -2.2784 17.2133 -1.3185 25 1 -2.8967 15.2783 0.0059 26 6 2.2978 3.4738 -0.6208 27 7 1.6772 2.3690 -0.9307 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3211 1.3996 1.7285 34 1 3.5425 5.7336 -0.0198 35 1 5.9195 6.0679 1.4682 36 1 4.5453 6.5545 2.4895 37 1 5.0603 7.8155 -0.3032 38 1 4.2759 8.7838 2.4642 39 1 5.2186 10.8290 1.1016 40 1 4.6232 10.0175 -0.3665 41 1 2.9170 10.8687 1.8813 42 1 3.7961 12.7489 0.6163 43 1 3.2006 11.9369 -0.8515 44 1 2.0114 14.3441 -0.6225 45 1 0.4506 17.1471 -1.5429 46 1 2.2319 4.4101 -1.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715798252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:15 Heat of formation + Delta-G solvation = 19.386345 kcal Electronic energy + Delta-G solvation = -26247.823712 eV Core-core repulsion = 22174.503384 eV Total energy + Delta-G solvation = -4073.320328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.73731 -39.37722 -38.32102 -36.68261 -35.17365 -34.98664 -33.89447 -32.78627 -31.21184 -30.95649 -30.20459 -28.33948 -26.16419 -24.61863 -24.10849 -23.07945 -22.26376 -21.06935 -20.54592 -19.85861 -19.12879 -18.24507 -17.86769 -16.52901 -16.28296 -16.13298 -15.98755 -15.53354 -15.29112 -14.86245 -14.72698 -14.44715 -14.40745 -14.17362 -13.82021 -13.69723 -13.56144 -13.24822 -13.18811 -12.93808 -12.64995 -12.48432 -12.23400 -12.02371 -11.76075 -11.56820 -11.50313 -11.34837 -11.14453 -11.03652 -10.38907 -10.21601 -10.16276 -10.00004 -9.54745 -9.50411 -9.23568 -8.94256 -8.46202 -8.04658 -7.95439 -6.41442 -3.82239 1.19029 1.81625 1.85664 1.96995 3.18326 3.25392 3.26550 3.27008 3.33224 3.91257 3.92664 4.12904 4.31951 4.36040 4.37621 4.47500 4.60361 4.69581 4.79743 4.90169 4.95972 5.07177 5.13384 5.22616 5.25019 5.29321 5.34161 5.41211 5.52494 5.54158 5.56987 5.72730 5.80049 5.96850 6.02765 6.21719 6.26019 6.40152 6.47181 6.62931 7.14032 7.18228 7.38698 7.55672 7.63546 8.06735 8.10312 8.61632 9.18281 9.54609 10.06106 10.76280 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.001548 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.896791 B =18081.750872 C =19760.171922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.128 3.872 5 C -0.295 4.295 6 C 0.596 3.404 7 O -0.555 6.555 8 N -0.721 5.721 9 C 0.156 3.844 10 C -0.183 4.183 11 C -0.111 4.111 12 C 0.082 3.918 13 N -0.665 5.665 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.083 3.917 27 N -0.294 5.294 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.187 0.813 34 H 0.402 0.598 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.350 0.650 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 -28.779 0.483 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.005 3.995 3 N -0.140 5.140 4 C -0.024 4.024 5 C -0.310 4.310 6 C 0.384 3.616 7 O -0.434 6.434 8 N -0.372 5.372 9 C 0.033 3.967 10 C -0.202 4.202 11 C -0.131 4.131 12 C -0.047 4.047 13 N -0.298 5.298 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.105 4.105 27 N -0.113 5.113 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.204 0.796 34 H 0.237 0.763 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.170 0.830 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.842 -30.288 0.200 31.287 hybrid contribution 0.489 1.919 0.454 2.031 sum 8.331 -28.369 0.654 29.574 Atomic orbital electron populations 1.22068 0.93242 1.03209 1.03954 1.21849 0.96587 0.76768 1.04289 1.48686 1.34029 1.10722 1.20603 1.22987 0.91482 0.93603 0.94331 1.20240 1.11822 0.95352 1.03582 1.17224 0.80150 0.81203 0.83071 1.90771 1.47309 1.78949 1.26398 1.45748 1.48912 1.10408 1.32170 1.20286 0.94780 0.85964 0.95684 1.22741 1.03970 0.93269 1.00251 1.22873 0.96000 0.94307 0.99875 1.21090 0.90549 0.92916 1.00132 1.60118 1.26698 1.23923 1.19031 1.21691 0.96587 0.89809 1.00164 1.19802 0.89130 0.83164 0.85318 1.90525 1.50962 1.61672 1.43530 1.41860 1.14875 1.16939 1.46362 1.19713 0.90753 1.01800 1.30677 0.87909 1.25259 0.99634 0.96550 0.96478 1.69615 1.34900 1.15611 1.34194 0.85854 0.81770 0.78924 0.77719 1.20431 1.20924 1.19403 1.24131 0.93911 0.97529 0.94963 1.77175 1.23664 0.97150 1.13321 0.90820 0.90384 0.91847 0.89233 0.88191 0.79557 0.76302 0.90843 0.91069 0.86537 0.86938 0.94331 0.90492 0.83033 0.93804 0.89541 0.77451 0.91885 0.79214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 10.09 37.16 0.37 -0.32 16 2 C 0.13 0.50 7.21 -4.04 -0.03 0.47 16 3 N -0.36 -2.78 3.65 -60.81 -0.22 -3.00 16 4 C 0.13 1.04 11.25 -16.56 -0.19 0.85 16 5 C -0.29 -2.85 6.13 -105.06 -0.64 -3.49 16 6 C 0.60 6.74 7.81 -12.52 -0.10 6.64 16 7 O -0.56 -8.06 16.90 5.26 0.09 -7.97 16 8 N -0.72 -6.74 5.54 -62.56 -0.35 -7.09 16 9 C 0.16 1.47 6.11 -5.19 -0.03 1.44 16 10 C -0.18 -1.64 9.24 -36.02 -0.33 -1.97 16 11 C -0.11 -1.14 9.38 -36.02 -0.34 -1.48 16 12 C 0.08 0.95 6.12 -4.97 -0.03 0.92 16 13 N -0.67 -10.56 6.11 -116.33 -0.71 -11.27 16 14 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 15 C 0.44 10.40 7.82 -10.98 -0.09 10.32 16 16 O -0.58 -15.91 15.78 5.55 0.09 -15.83 16 17 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 18 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 22 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.08 0.73 11.50 -16.98 -0.20 0.53 16 27 N -0.29 -2.86 12.33 30.86 0.38 -2.48 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.14 8.06 -51.93 -0.42 -0.27 16 33 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.40 2.96 7.42 -40.82 -0.30 2.65 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 37 H 0.12 0.92 7.84 -52.49 -0.41 0.51 16 38 H 0.11 1.13 7.84 -52.49 -0.41 0.72 16 39 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 41 H 0.35 5.75 8.42 -39.29 -0.33 5.42 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.19 1.13 7.50 -52.49 -0.39 0.74 16 LS Contribution 402.77 15.07 6.07 6.07 Total: -1.00 -36.15 402.77 -7.59 -43.74 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -6.72 Total: 13.18 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -1.87 Total: 6.72 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.23 Total: -61.96 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.18 Total: -23.80 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.15 -7.59 -43.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715798252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.126 kcal (2) G-P(sol) polarization free energy of solvation -36.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds