Wall clock time and date at job start Tue Mar 31 2020 18:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47105 * 2 1 4 4 C 1.34260 * 125.75371 * 125.27232 * 3 2 1 5 5 C 1.38043 * 107.41623 * 180.14039 * 4 3 2 6 6 C 1.47426 * 126.42099 * 179.86654 * 5 4 3 7 7 O 1.21616 * 119.99158 * 359.71337 * 6 5 4 8 8 N 1.34774 * 120.00786 * 179.71199 * 6 5 4 9 9 C 1.46502 * 120.00215 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46804 * 180.02562 * 9 8 6 11 11 C 1.30994 * 119.99826 * 125.27541 * 10 9 8 12 12 C 1.50702 * 120.00204 * 179.71900 * 11 10 9 13 13 N 1.46901 * 109.47213 * 124.99711 * 12 11 10 14 14 C 1.46900 * 110.99893 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.46824 * 180.02562 * 14 13 12 16 16 O 1.21285 * 119.99712 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99574 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99649 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00012 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99963 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99752 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99945 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46995 * 90.00192 * 22 20 18 24 24 H 1.48503 * 109.47032 * 209.99759 * 22 20 18 25 25 H 1.48497 * 109.47096 * 329.99594 * 22 20 18 26 26 C 1.41302 * 107.17092 * 359.60542 * 5 4 3 27 27 N 1.30448 * 108.02053 * 0.24069 * 26 5 4 28 28 H 1.09002 * 109.47006 * 60.00037 * 1 2 3 29 29 H 1.09000 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47203 * 300.00635 * 1 2 3 31 31 H 1.08993 * 109.46730 * 239.99514 * 2 1 3 32 32 H 1.09002 * 109.47006 * 119.99963 * 2 1 3 33 33 H 1.07997 * 126.29434 * 359.97438 * 4 3 2 34 34 H 0.96997 * 119.99865 * 0.02562 * 8 6 5 35 35 H 1.08998 * 109.47066 * 59.99906 * 9 8 6 36 36 H 1.09001 * 109.47002 * 300.00046 * 9 8 6 37 37 H 1.08002 * 119.99761 * 304.99301 * 10 9 8 38 38 H 1.08002 * 120.00350 * 359.72370 * 11 10 9 39 39 H 1.08998 * 109.47600 * 245.00508 * 12 11 10 40 40 H 1.09004 * 109.46937 * 5.00335 * 12 11 10 41 41 H 1.00899 * 110.99557 * 56.04877 * 13 12 11 42 42 H 1.08994 * 109.47121 * 300.00035 * 14 13 12 43 43 H 1.09002 * 109.47039 * 60.00329 * 14 13 12 44 44 H 0.96999 * 120.00487 * 0.02562 * 17 15 14 45 45 H 0.97005 * 119.99525 * 179.97438 * 21 20 18 46 46 H 1.07998 * 125.98573 * 180.20780 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9111 0.8895 5 6 3.0709 3.2310 0.5368 6 6 3.9323 4.2035 1.2336 7 8 4.5500 3.8671 2.2258 8 7 4.0354 5.4652 0.7713 9 6 4.8919 6.4314 1.4634 10 6 4.8309 7.7578 0.7506 11 6 4.5051 8.8415 1.4104 12 6 4.4503 10.1689 0.6990 13 7 3.1282 10.7773 0.8988 14 6 3.0376 12.0755 0.2174 15 6 1.6707 12.6680 0.4449 16 8 0.8528 12.0680 1.1097 17 7 1.3573 13.8645 -0.0904 18 6 0.1137 14.4033 0.1161 19 1 -0.6147 13.8691 0.7081 20 6 -0.2097 15.6366 -0.4362 21 7 0.6765 16.2863 -1.1570 22 14 -1.9039 16.3710 -0.1542 23 1 -1.8836 17.2053 1.0742 24 1 -2.2784 17.2133 -1.3185 25 1 -2.8967 15.2783 0.0059 26 6 2.2978 3.4738 -0.6208 27 7 1.6772 2.3690 -0.9307 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3211 1.3996 1.7285 34 1 3.5425 5.7336 -0.0198 35 1 5.9195 6.0679 1.4682 36 1 4.5453 6.5545 2.4895 37 1 5.0603 7.8155 -0.3032 38 1 4.2759 8.7838 2.4642 39 1 5.2186 10.8290 1.1016 40 1 4.6232 10.0175 -0.3665 41 1 2.9170 10.8687 1.8813 42 1 3.7961 12.7489 0.6163 43 1 3.2006 11.9369 -0.8515 44 1 2.0114 14.3441 -0.6225 45 1 0.4506 17.1471 -1.5429 46 1 2.2319 4.4101 -1.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715798252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:14 Heat of formation + Delta-G solvation = -8.842118 kcal Electronic energy + Delta-G solvation = -26249.047790 eV Core-core repulsion = 22174.503384 eV Total energy + Delta-G solvation = -4074.544406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.36816 -40.23152 -40.12987 -37.71826 -36.29393 -35.79498 -35.45257 -33.78700 -33.22222 -31.57411 -30.85478 -29.44153 -27.53738 -25.95321 -24.83518 -24.01244 -23.12921 -21.65888 -21.37816 -21.09848 -20.42909 -19.85888 -18.89530 -17.88137 -17.08506 -17.02955 -16.88747 -16.65352 -16.44278 -16.11069 -15.95359 -15.49800 -15.36275 -15.20582 -15.09253 -14.82016 -14.55322 -14.29572 -14.05285 -13.78747 -13.52460 -13.40152 -13.19296 -13.01563 -12.99420 -12.88113 -12.68881 -12.47175 -12.41179 -12.11975 -12.01016 -11.90215 -11.50174 -11.02922 -10.60553 -10.38422 -10.34391 -10.05137 -10.00330 -9.62529 -9.24316 -8.46068 -5.94776 0.53566 1.07863 1.16261 1.38665 1.42502 1.43052 1.55336 2.06407 2.30344 2.47144 2.50947 3.03356 3.21383 3.47266 3.60932 3.78075 3.81360 4.00795 4.06342 4.11786 4.14675 4.32582 4.34619 4.41235 4.46126 4.52165 4.55874 4.59519 4.67044 4.72603 4.77106 4.80328 4.87781 4.93051 5.20583 5.39071 5.41706 5.46485 5.71034 5.80975 5.88603 5.92077 6.11885 6.39959 6.49293 6.61136 6.65068 7.13483 7.29241 7.57288 8.12835 8.71225 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.001548 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.896791 B =18081.750872 C =19760.171922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.358 5.358 4 C 0.132 3.868 5 C -0.319 4.319 6 C 0.594 3.406 7 O -0.594 6.594 8 N -0.713 5.713 9 C 0.156 3.844 10 C -0.162 4.162 11 C -0.127 4.127 12 C 0.086 3.914 13 N -0.682 5.682 14 C 0.065 3.935 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.083 3.917 27 N -0.323 5.323 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.131 0.869 33 H 0.208 0.792 34 H 0.413 0.587 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.344 0.656 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.731 -29.493 -0.234 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.003 4.003 3 N -0.137 5.137 4 C -0.021 4.021 5 C -0.334 4.334 6 C 0.383 3.617 7 O -0.476 6.476 8 N -0.364 5.364 9 C 0.033 3.967 10 C -0.181 4.181 11 C -0.146 4.146 12 C -0.041 4.041 13 N -0.314 5.314 14 C -0.067 4.067 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.104 4.104 27 N -0.143 5.143 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.149 0.851 33 H 0.225 0.775 34 H 0.249 0.751 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.152 0.848 38 H 0.128 0.872 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.162 0.838 42 H 0.086 0.914 43 H 0.125 0.875 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 8.450 -30.996 -0.567 32.132 hybrid contribution 0.328 2.023 0.679 2.159 sum 8.777 -28.973 0.112 30.274 Atomic orbital electron populations 1.22032 0.93459 1.04251 1.02275 1.22244 0.96418 0.75256 1.06391 1.49007 1.33397 1.11502 1.19764 1.23369 0.90880 0.93367 0.94495 1.20256 1.12788 0.95889 1.04457 1.17472 0.79819 0.81756 0.82604 1.90741 1.49073 1.79693 1.28141 1.45691 1.48586 1.09898 1.32259 1.20258 0.94893 0.86304 0.95253 1.22768 1.02247 0.92321 1.00766 1.22800 0.97651 0.94211 0.99964 1.21134 0.88643 0.93255 1.01115 1.60128 1.29712 1.23074 1.18514 1.21553 0.92671 0.90788 1.01733 1.20934 0.91097 0.82159 0.83425 1.90492 1.53070 1.62560 1.45007 1.41927 1.14333 1.17755 1.46987 1.19674 0.91851 1.02899 1.32122 0.90399 1.26021 1.03136 0.96280 0.95713 1.69670 1.36275 1.15927 1.34136 0.84936 0.77260 0.77982 0.78198 1.19622 1.19493 1.19897 1.24468 0.93163 0.98143 0.94668 1.77127 1.24625 0.97934 1.14611 0.92911 0.87991 0.92999 0.88122 0.85129 0.77515 0.75078 0.90575 0.92255 0.84842 0.87223 0.92989 0.89277 0.83785 0.91379 0.87504 0.76900 0.91290 0.77276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.09 71.98 0.73 -0.46 16 2 C 0.12 0.73 7.21 86.38 0.62 1.35 16 3 N -0.36 -5.13 3.65 -346.31 -1.26 -6.40 16 4 C 0.13 2.02 11.25 84.28 0.95 2.96 16 5 C -0.32 -6.00 6.13 -20.15 -0.12 -6.13 16 6 C 0.59 13.31 7.81 86.66 0.68 13.99 16 7 O -0.59 -17.37 16.90 -4.08 -0.07 -17.44 16 8 N -0.71 -12.78 5.54 -470.09 -2.60 -15.38 16 9 C 0.16 2.80 6.11 85.63 0.52 3.33 16 10 C -0.16 -2.59 9.24 25.65 0.24 -2.35 16 11 C -0.13 -2.41 9.38 25.65 0.24 -2.17 16 12 C 0.09 1.81 6.12 85.56 0.52 2.34 16 13 N -0.68 -20.76 6.11 -521.97 -3.19 -23.95 16 14 C 0.06 2.15 6.17 85.56 0.53 2.68 16 15 C 0.44 20.70 7.82 87.66 0.69 21.38 16 16 O -0.62 -34.85 15.78 -3.05 -0.05 -34.90 16 17 N -0.57 -29.32 5.29 -306.99 -1.62 -30.94 16 18 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 21 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 22 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 C 0.08 1.41 11.50 85.65 0.99 2.39 16 27 N -0.32 -6.12 12.33 -56.27 -0.69 -6.82 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.13 0.02 8.06 -2.39 -0.02 0.00 16 33 H 0.21 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.41 5.54 7.42 -92.71 -0.69 4.86 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.23 7.79 -2.39 -0.02 1.21 16 37 H 0.13 1.72 7.84 -2.91 -0.02 1.70 16 38 H 0.11 2.14 7.84 -2.91 -0.02 2.11 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.66 7.79 -2.38 -0.02 1.64 16 41 H 0.34 11.15 8.42 -89.69 -0.76 10.40 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 45 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 46 H 0.21 2.30 7.50 -2.91 -0.02 2.28 16 Total: -1.00 -79.23 402.77 -0.48 -79.71 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -1.15 Total: 39.43 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 7.85 Total: 20.81 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -9.09 Total: -132.60 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.12 Total: -52.34 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -79.23 -0.48 -79.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715798252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.864 kcal (2) G-P(sol) polarization free energy of solvation -79.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds