Wall clock time and date at job start Tue Mar 31 2020 18:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47316 * 2 1 4 4 C 1.53006 * 109.47021 * 239.99849 * 2 1 3 5 5 N 1.46904 * 109.47097 * 185.00050 * 4 2 1 6 6 C 1.46890 * 111.00135 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47294 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99781 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99729 * 179.97438 * 7 6 5 10 10 C 1.37108 * 119.99565 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99855 * 359.97438 * 10 9 7 12 12 C 1.38942 * 119.99785 * 179.97438 * 10 9 7 13 13 N 1.31416 * 120.00196 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00001 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46961 * 90.00314 * 14 12 10 16 16 H 1.48494 * 109.47055 * 210.00236 * 14 12 10 17 17 H 1.48497 * 109.46786 * 330.00459 * 14 12 10 18 18 N 1.46499 * 109.47160 * 120.00197 * 2 1 3 19 19 C 1.34777 * 120.00031 * 274.99955 * 18 2 1 20 20 O 1.21576 * 119.99595 * 359.97438 * 19 18 2 21 21 C 1.47703 * 120.00198 * 179.97438 * 19 18 2 22 22 N 1.31842 * 126.57211 * 359.97438 * 21 19 18 23 23 N 1.28465 * 110.05826 * 180.02562 * 22 21 19 24 24 H 0.97005 * 124.88162 * 179.97438 * 23 22 21 25 25 C 1.35251 * 110.23203 * 359.97438 * 23 22 21 26 26 C 1.35046 * 107.07792 * 0.02562 * 25 23 22 27 27 C 1.50946 * 110.52855 * 179.97438 * 26 25 23 28 28 C 1.54514 * 105.05712 * 343.18481 * 27 26 25 29 29 C 1.51236 * 142.76701 * 180.02562 * 25 23 22 30 30 H 1.08998 * 109.47173 * 300.00239 * 1 2 3 31 31 H 1.09002 * 109.46865 * 59.99763 * 1 2 3 32 32 H 1.08998 * 109.47240 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47372 * 305.00037 * 4 2 1 34 34 H 1.09005 * 109.46957 * 65.00643 * 4 2 1 35 35 H 1.00899 * 110.99662 * 56.04216 * 5 4 2 36 36 H 1.09006 * 109.46881 * 299.99722 * 6 5 4 37 37 H 1.08999 * 109.47426 * 59.99875 * 6 5 4 38 38 H 0.96998 * 120.00457 * 359.97438 * 9 7 6 39 39 H 0.97001 * 119.99906 * 179.97438 * 13 12 10 40 40 H 0.97002 * 120.00195 * 94.99922 * 18 2 1 41 41 H 1.09002 * 110.34057 * 102.11067 * 27 26 25 42 42 H 1.09000 * 110.34369 * 224.26004 * 27 26 25 43 43 H 1.09003 * 110.92883 * 143.70081 * 28 27 26 44 44 H 1.09000 * 110.93258 * 267.36107 * 28 27 26 45 45 H 1.09005 * 110.32518 * 315.69329 * 29 25 23 46 46 H 1.08997 * 110.32815 * 77.80856 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5041 -0.8268 -1.1905 6 6 4.0304 -1.5149 -2.3767 7 6 5.5317 -1.6045 -2.2806 8 8 6.1066 -1.1403 -1.3189 9 7 6.2354 -2.2005 -3.2636 10 6 7.6012 -2.2825 -3.1759 11 1 8.1131 -1.8691 -2.3195 12 6 8.3266 -2.8974 -4.1889 13 7 7.7037 -3.3999 -5.2313 14 14 10.1876 -3.0085 -4.0699 15 1 10.5650 -4.2659 -3.3760 16 1 10.7721 -3.0018 -5.4350 17 1 10.7048 -1.8460 -3.3042 18 7 2.0183 -0.6906 1.1961 19 6 2.1471 -0.0183 2.3571 20 8 1.8584 1.1614 2.4116 21 6 2.6389 -0.7148 3.5632 22 7 2.9868 -1.9834 3.6509 23 7 3.3666 -2.2545 4.8478 24 1 3.6680 -3.1255 5.1503 25 6 3.2859 -1.1508 5.6253 26 6 2.8266 -0.1487 4.8452 27 6 2.7054 1.1284 5.6406 28 6 2.7436 0.6849 7.1203 29 6 3.5230 -0.6491 7.0322 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 1.7517 -0.1583 -2.1370 35 1 3.7995 -1.2884 -0.3433 36 1 3.6096 -2.5190 -2.4308 37 1 3.7559 -0.9572 -3.2720 38 1 5.7756 -2.5721 -4.0326 39 1 8.2103 -3.8288 -5.9387 40 1 2.2490 -1.6318 1.1526 41 1 3.5424 1.7917 5.4222 42 1 1.7611 1.6252 5.4182 43 1 3.2797 1.4115 7.7309 44 1 1.7364 0.5231 7.5044 45 1 3.1345 -1.3625 7.7591 46 1 4.5866 -0.4800 7.1998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715936560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:36 Heat of formation + Delta-G solvation = 7.698843 kcal Electronic energy + Delta-G solvation = -28174.872991 eV Core-core repulsion = 24101.045855 eV Total energy + Delta-G solvation = -4073.827136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.07289 -39.59730 -38.25387 -37.08052 -36.59807 -34.20968 -33.59192 -32.35551 -31.20236 -30.71140 -29.00161 -27.82928 -27.55476 -25.08854 -24.41523 -23.16665 -22.02042 -21.03091 -20.19497 -20.14791 -19.20887 -17.88778 -17.81170 -17.18117 -16.51366 -16.21140 -15.97121 -15.30213 -15.15468 -14.71915 -14.49682 -14.22872 -14.08567 -13.83536 -13.67065 -13.47840 -13.17572 -13.04239 -13.01536 -12.61782 -12.42472 -12.07285 -11.89643 -11.68185 -11.57861 -11.49418 -11.46933 -11.44391 -11.05434 -10.98456 -10.89516 -10.38238 -10.20277 -10.08439 -9.53770 -9.49298 -9.07074 -8.83115 -8.43388 -8.04078 -7.93864 -6.40104 -3.80744 1.43706 1.88513 2.41626 3.11343 3.18656 3.27096 3.33630 3.40758 3.93050 3.95618 4.09313 4.28939 4.30872 4.40449 4.65354 4.81475 4.86977 4.99502 5.06377 5.20845 5.23571 5.25251 5.31382 5.38727 5.44929 5.49673 5.56829 5.62266 5.67736 5.68944 5.81128 5.88690 5.90802 5.98198 6.02028 6.13121 6.20822 6.29025 6.49260 6.77201 7.20645 7.41061 7.56841 7.65527 7.71268 8.08286 8.23039 8.63506 9.19837 9.56330 10.08235 10.77720 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.002418 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.419266 B =11577.709920 C =13273.914237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.100 0.900 4 C 0.051 3.949 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.441 3.559 8 O -0.581 6.581 9 N -0.565 5.565 10 C -0.298 4.298 11 H 0.102 0.898 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.279 1.279 16 H -0.283 1.283 17 H -0.269 1.269 18 N -0.710 5.710 19 C 0.609 3.391 20 O -0.529 6.529 21 C 0.010 3.990 22 N -0.248 5.248 23 N -0.362 5.362 24 H 0.444 0.556 25 C -0.024 4.024 26 C -0.159 4.159 27 C -0.048 4.048 28 C -0.115 4.115 29 C -0.036 4.036 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.088 0.912 35 H 0.349 0.651 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.403 0.597 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.505 2.041 20.541 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.118 0.882 4 C -0.079 4.079 5 N -0.301 5.301 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.465 6.465 9 N -0.202 5.202 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.205 1.205 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.362 5.362 19 C 0.393 3.607 20 O -0.403 6.403 21 C -0.151 4.151 22 N -0.084 5.084 23 N -0.075 5.075 24 H 0.288 0.712 25 C -0.151 4.151 26 C -0.169 4.169 27 C -0.086 4.086 28 C -0.153 4.153 29 C -0.075 4.075 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.106 0.894 35 H 0.169 0.831 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.238 0.762 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.064 2.812 20.101 25.276 hybrid contribution 0.728 -1.799 0.031 1.941 sum -14.336 1.013 20.133 24.736 Atomic orbital electron populations 1.22153 0.94951 1.02115 1.02783 1.21084 0.93476 0.98554 0.82914 0.88207 1.22307 0.88877 0.99008 0.97751 1.60013 1.07488 1.57572 1.05027 1.21689 0.95099 0.96964 0.94495 1.19822 0.88115 0.84193 0.85267 1.90534 1.71124 1.51383 1.33462 1.41862 1.07400 1.50988 1.19904 1.19700 0.81560 1.34975 1.06522 0.87978 1.25256 1.00660 0.96858 0.95222 1.69615 1.36667 1.38731 1.09388 0.85860 0.82231 0.78815 0.77407 1.20476 1.20907 1.19400 1.45857 1.66807 1.14213 1.09314 1.16806 0.77000 0.85606 0.81291 1.90778 1.50374 1.14718 1.84477 1.21358 1.08287 0.90479 0.94952 1.73720 1.16209 1.16801 1.01655 1.42585 1.48351 1.11240 1.05277 0.71171 1.22179 1.06613 0.87905 0.98415 1.20855 1.06203 0.97675 0.92206 1.20408 1.03422 0.93236 0.91527 1.22483 1.00685 0.95439 0.96699 1.20679 1.01749 0.96892 0.88217 0.91833 0.91291 0.92541 0.94957 0.89355 0.83093 0.93875 0.89433 0.77464 0.91909 0.76222 0.90032 0.90213 0.89707 0.90542 0.90466 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16 2 C 0.14 1.79 2.88 -67.93 -0.20 1.59 16 3 H 0.10 1.46 7.58 -51.93 -0.39 1.07 16 4 C 0.05 0.63 5.30 -3.82 -0.02 0.61 16 5 N -0.67 -11.24 6.12 -115.06 -0.70 -11.94 16 6 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 7 C 0.44 10.69 7.82 -10.98 -0.09 10.60 16 8 O -0.58 -16.34 15.78 5.55 0.09 -16.25 16 9 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 10 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 11 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 14 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 N -0.71 -9.34 4.35 -54.79 -0.24 -9.58 16 19 C 0.61 9.25 7.79 -12.39 -0.10 9.15 16 20 O -0.53 -9.26 16.59 5.30 0.09 -9.17 16 21 C 0.01 0.14 7.13 -82.80 -0.59 -0.45 16 22 N -0.25 -3.13 11.93 33.40 0.40 -2.73 16 23 N -0.36 -3.46 6.84 33.61 0.23 -3.23 16 24 H 0.44 2.58 8.96 -190.44 -1.71 0.87 16 25 C -0.02 -0.23 8.12 -81.96 -0.67 -0.90 16 26 C -0.16 -1.95 6.82 -104.44 -0.71 -2.66 16 27 C -0.05 -0.46 6.77 -26.97 -0.18 -0.64 16 28 C -0.12 -0.68 7.15 -25.02 -0.18 -0.86 16 29 C -0.04 -0.22 6.79 -26.70 -0.18 -0.40 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.35 6.21 7.28 -39.29 -0.29 5.92 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.40 4.92 7.88 -40.82 -0.32 4.60 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 389.13 15.07 5.86 5.86 Total: -1.00 -36.03 389.13 -9.50 -45.52 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -8.04 Total: 16.37 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -2.83 Total: 7.53 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: 0.35 Total: -66.20 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.18 Total: -25.42 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.03 -9.50 -45.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715936560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.223 kcal (2) G-P(sol) polarization free energy of solvation -36.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds