Wall clock time and date at job start Tue Mar 31 2020 18:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47069 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47102 * 120.00117 * 14 12 10 17 17 H 1.48502 * 109.47234 * 240.00264 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21599 * 120.00344 * 0.02562 * 19 18 2 21 21 C 1.47433 * 119.99555 * 180.02562 * 19 18 2 22 22 C 1.41199 * 126.44153 * 359.68953 * 21 19 18 23 23 N 1.30291 * 108.03343 * 179.81169 * 22 21 19 24 24 N 1.40517 * 109.01544 * 0.33734 * 23 22 21 25 25 C 1.34018 * 108.16750 * 359.89907 * 24 23 22 26 26 C 1.51386 * 110.34336 * 179.71905 * 25 24 23 27 27 C 1.54568 * 104.14742 * 343.57127 * 26 25 24 28 28 C 1.47248 * 140.81447 * 180.02562 * 24 23 22 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 35 35 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 36 36 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 37 37 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 38 38 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 39 39 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 40 40 H 1.08000 * 125.98507 * 359.96559 * 22 21 19 41 41 H 1.08998 * 110.49814 * 102.23904 * 26 25 24 42 42 H 1.08998 * 110.50059 * 224.91111 * 26 25 24 43 43 H 1.09001 * 110.99514 * 266.92419 * 27 26 25 44 44 H 1.09007 * 111.02428 * 143.12009 * 27 26 25 45 45 H 1.09007 * 110.22840 * 316.03585 * 28 24 23 46 46 H 1.08997 * 110.23261 * 77.90902 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.6422 -2.3643 2.8119 16 1 10.7987 -2.3008 5.2313 17 1 10.6024 -4.4282 4.0840 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8584 1.1617 -2.4116 21 6 2.6381 -0.7134 -3.5609 22 6 3.0163 -2.0709 -3.6500 23 7 3.3884 -2.3064 -4.8762 24 7 3.2758 -1.1222 -5.6242 25 6 2.8204 -0.1574 -4.8132 26 6 2.6867 1.1468 -5.5701 27 6 3.5256 0.9286 -6.8498 28 6 3.4906 -0.6085 -6.9874 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -0.1583 2.1369 33 1 1.6053 -1.7198 1.2952 34 1 3.7996 -1.2884 0.3435 35 1 3.7556 -0.9587 3.2721 36 1 3.6093 -2.5199 2.4296 37 1 5.7754 -2.5722 4.0326 38 1 8.2103 -3.8257 5.9405 39 1 2.2491 -1.6318 -1.1525 40 1 2.9978 -2.7890 -2.8435 41 1 1.6437 1.3350 -5.8250 42 1 3.0921 1.9716 -4.9841 43 1 4.5466 1.2850 -6.7130 44 1 3.0588 1.4085 -7.7101 45 1 4.4388 -0.9732 -7.3825 46 1 2.6703 -0.9114 -7.6380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715977048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:16 Heat of formation + Delta-G solvation = 15.399659 kcal Electronic energy + Delta-G solvation = -28213.460202 eV Core-core repulsion = 24139.966998 eV Total energy + Delta-G solvation = -4073.493204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.05697 -39.49869 -38.25162 -36.68798 -36.52130 -34.19616 -33.57371 -31.74124 -31.19255 -30.59337 -29.73995 -27.55865 -27.45677 -25.00195 -23.36765 -22.88394 -22.50760 -21.26327 -20.32820 -19.86642 -19.20269 -17.94349 -17.70931 -16.85520 -16.27131 -16.06203 -15.36787 -15.07547 -14.87236 -14.74136 -14.52205 -14.33650 -14.31869 -13.92211 -13.81425 -13.62337 -13.55694 -13.36761 -13.01293 -12.59502 -12.43617 -12.34200 -12.04119 -11.89593 -11.68055 -11.64696 -11.58538 -11.44315 -11.10527 -11.05529 -10.91641 -10.32988 -10.20933 -9.79682 -9.60676 -9.50410 -9.10832 -8.72764 -8.43800 -8.04937 -7.94184 -6.40418 -3.80958 1.35889 1.89462 2.02795 3.17548 3.23873 3.28058 3.35657 3.48534 3.64500 3.92591 4.06455 4.08785 4.23261 4.29517 4.33179 4.63089 4.83553 4.92086 4.96238 5.05574 5.05976 5.08843 5.23370 5.25631 5.28125 5.32332 5.43571 5.46806 5.49022 5.61465 5.63510 5.69134 5.80186 5.97946 6.03497 6.14757 6.22170 6.28618 6.40098 6.55964 7.19605 7.38616 7.57038 7.58923 7.65006 8.08309 8.35748 8.63051 9.19784 9.56091 10.07733 10.77457 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.002446 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.354384 B =11442.286021 C =13148.822383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.098 0.902 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.581 6.581 9 N -0.565 5.565 10 C -0.297 4.297 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.720 5.720 19 C 0.602 3.398 20 O -0.549 6.549 21 C -0.279 4.279 22 C 0.087 3.913 23 N -0.275 5.275 24 N -0.385 5.385 25 C 0.138 3.862 26 C -0.070 4.070 27 C -0.134 4.134 28 C 0.125 3.875 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.032 0.968 34 H 0.348 0.652 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.395 0.605 40 H 0.195 0.805 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.183 4.609 -19.368 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.116 0.884 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.465 6.465 9 N -0.201 5.201 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.371 5.371 19 C 0.390 3.610 20 O -0.428 6.428 21 C -0.294 4.294 22 C -0.100 4.100 23 N -0.093 5.093 24 N -0.164 5.164 25 C 0.004 3.996 26 C -0.108 4.108 27 C -0.173 4.173 28 C 0.005 3.995 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.168 0.832 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.229 0.771 40 H 0.212 0.788 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.115 0.885 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.277 5.257 -20.635 26.207 hybrid contribution 0.280 -1.396 1.112 1.806 sum -14.997 3.861 -19.523 24.919 Atomic orbital electron populations 1.22150 0.95162 1.02000 1.02653 1.21003 0.93286 0.98504 0.82959 0.88385 1.22311 0.88810 0.98974 0.97884 1.60014 1.07524 1.57520 1.04943 1.21693 0.95105 0.96946 0.94534 1.19819 0.88111 0.84217 0.85293 1.90539 1.71120 1.51355 1.33488 1.41866 1.07409 1.50942 1.19921 1.19751 0.81523 1.34903 1.06534 0.87900 1.25258 1.00666 0.96852 0.95226 1.69620 1.36577 1.38772 1.09409 0.85808 0.82295 0.77856 0.78441 1.19218 1.20741 1.20790 1.45744 1.68066 1.13699 1.09605 1.17120 0.76340 0.85723 0.81863 1.90736 1.51477 1.15412 1.85159 1.19468 1.21279 0.94775 0.93903 1.24093 0.96074 0.95057 0.94809 1.77235 1.24925 1.02955 1.04151 1.50115 1.49253 1.07190 1.09841 1.22480 0.93699 0.92206 0.91170 1.21001 1.02268 0.93434 0.94147 1.22883 1.02554 0.92961 0.98860 1.22469 1.04030 0.94077 0.78917 0.91906 0.92615 0.91483 0.89494 0.95012 0.83193 0.89478 0.93863 0.77476 0.91954 0.77126 0.78812 0.88045 0.87519 0.89055 0.87676 0.88547 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 2 C 0.15 1.72 2.88 -67.93 -0.20 1.52 16 3 H 0.10 1.40 7.58 -51.93 -0.39 1.00 16 4 C 0.05 0.59 5.30 -3.82 -0.02 0.57 16 5 N -0.67 -10.69 6.12 -115.06 -0.70 -11.39 16 6 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 7 C 0.44 10.46 7.82 -10.99 -0.09 10.37 16 8 O -0.58 -16.02 15.78 5.55 0.09 -15.94 16 9 N -0.56 -14.38 5.29 -10.97 -0.06 -14.44 16 10 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 11 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 14 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 N -0.72 -8.46 4.35 -54.88 -0.24 -8.69 16 19 C 0.60 8.41 7.78 -12.52 -0.10 8.32 16 20 O -0.55 -9.17 16.56 5.28 0.09 -9.08 16 21 C -0.28 -3.61 6.13 -105.03 -0.64 -4.26 16 22 C 0.09 1.04 11.50 -17.08 -0.20 0.84 16 23 N -0.27 -3.60 12.64 30.82 0.39 -3.21 16 24 N -0.38 -4.27 4.81 -55.14 -0.27 -4.54 16 25 C 0.14 1.60 7.31 -81.31 -0.59 1.01 16 26 C -0.07 -0.54 6.86 -26.72 -0.18 -0.72 16 27 C -0.13 -0.61 7.18 -25.19 -0.18 -0.79 16 28 C 0.13 0.78 7.78 -2.92 -0.02 0.76 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.35 5.75 7.28 -39.29 -0.29 5.46 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.39 3.86 7.11 -40.82 -0.29 3.57 16 40 H 0.20 1.67 7.50 -52.49 -0.39 1.28 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -37.13 389.50 -7.96 -45.09 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -6.69 Total: 14.79 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -2.14 Total: 9.23 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -0.15 Total: -66.20 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: 0.17 Total: -25.01 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.13 -7.96 -45.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715977048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.492 kcal (2) G-P(sol) polarization free energy of solvation -37.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds