Wall clock time and date at job start Tue Mar 31 2020 18:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47069 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47102 * 120.00117 * 14 12 10 17 17 H 1.48502 * 109.47234 * 240.00264 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21599 * 120.00344 * 0.02562 * 19 18 2 21 21 C 1.47433 * 119.99555 * 180.02562 * 19 18 2 22 22 C 1.41199 * 126.44153 * 359.68953 * 21 19 18 23 23 N 1.30291 * 108.03343 * 179.81169 * 22 21 19 24 24 N 1.40517 * 109.01544 * 0.33734 * 23 22 21 25 25 C 1.34018 * 108.16750 * 359.89907 * 24 23 22 26 26 C 1.51386 * 110.34336 * 179.71905 * 25 24 23 27 27 C 1.54568 * 104.14742 * 343.57127 * 26 25 24 28 28 C 1.47248 * 140.81447 * 180.02562 * 24 23 22 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 35 35 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 36 36 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 37 37 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 38 38 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 39 39 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 40 40 H 1.08000 * 125.98507 * 359.96559 * 22 21 19 41 41 H 1.08998 * 110.49814 * 102.23904 * 26 25 24 42 42 H 1.08998 * 110.50059 * 224.91111 * 26 25 24 43 43 H 1.09001 * 110.99514 * 266.92419 * 27 26 25 44 44 H 1.09007 * 111.02428 * 143.12009 * 27 26 25 45 45 H 1.09007 * 110.22840 * 316.03585 * 28 24 23 46 46 H 1.08997 * 110.23261 * 77.90902 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.6422 -2.3643 2.8119 16 1 10.7987 -2.3008 5.2313 17 1 10.6024 -4.4282 4.0840 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8584 1.1617 -2.4116 21 6 2.6381 -0.7134 -3.5609 22 6 3.0163 -2.0709 -3.6500 23 7 3.3884 -2.3064 -4.8762 24 7 3.2758 -1.1222 -5.6242 25 6 2.8204 -0.1574 -4.8132 26 6 2.6867 1.1468 -5.5701 27 6 3.5256 0.9286 -6.8498 28 6 3.4906 -0.6085 -6.9874 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -0.1583 2.1369 33 1 1.6053 -1.7198 1.2952 34 1 3.7996 -1.2884 0.3435 35 1 3.7556 -0.9587 3.2721 36 1 3.6093 -2.5199 2.4296 37 1 5.7754 -2.5722 4.0326 38 1 8.2103 -3.8257 5.9405 39 1 2.2491 -1.6318 -1.1525 40 1 2.9978 -2.7890 -2.8435 41 1 1.6437 1.3350 -5.8250 42 1 3.0921 1.9716 -4.9841 43 1 4.5466 1.2850 -6.7130 44 1 3.0588 1.4085 -7.7101 45 1 4.4388 -0.9732 -7.3825 46 1 2.6703 -0.9114 -7.6380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715977048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:15 Heat of formation + Delta-G solvation = -14.464511 kcal Electronic energy + Delta-G solvation = -28214.755209 eV Core-core repulsion = 24139.966998 eV Total energy + Delta-G solvation = -4074.788211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.86861 -40.56421 -40.05810 -37.74908 -37.31598 -36.01533 -35.00731 -33.25759 -32.64761 -31.43543 -30.45854 -28.95251 -28.17682 -26.68637 -24.69805 -23.85051 -23.13085 -22.08819 -21.25266 -21.11868 -20.66646 -19.90162 -18.72206 -17.80021 -17.48234 -17.16252 -16.89029 -16.35825 -16.13473 -15.92270 -15.69121 -15.56576 -15.24734 -15.16741 -15.06256 -14.58064 -14.47006 -14.28230 -14.07043 -13.97498 -13.54895 -13.28541 -13.07899 -13.03308 -12.99851 -12.78012 -12.63452 -12.52296 -12.40331 -12.13227 -12.12451 -11.99772 -11.88770 -11.51370 -10.87940 -10.38117 -10.35744 -10.11007 -10.00855 -9.61869 -9.28855 -8.46884 -5.95168 0.48172 1.09402 1.21798 1.36019 1.41294 1.55355 2.06316 2.27796 2.30745 2.48043 2.92158 3.04941 3.20711 3.45249 3.52737 3.63790 3.85957 3.90131 4.00174 4.12813 4.25241 4.30759 4.33381 4.42076 4.46394 4.51733 4.52827 4.62269 4.71708 4.72622 4.79189 4.83153 4.86491 4.96454 5.05774 5.15234 5.32579 5.36709 5.41264 5.60644 5.65691 5.89137 6.11238 6.39943 6.50612 6.60973 6.65695 7.13429 7.34005 7.57295 8.13284 8.70706 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.002446 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.354384 B =11442.286021 C =13148.822383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.149 3.851 3 H 0.067 0.933 4 C 0.056 3.944 5 N -0.688 5.688 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.625 6.625 9 N -0.573 5.573 10 C -0.332 4.332 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.275 1.275 16 H -0.271 1.271 17 H -0.270 1.270 18 N -0.712 5.712 19 C 0.598 3.402 20 O -0.586 6.586 21 C -0.311 4.311 22 C 0.088 3.912 23 N -0.309 5.309 24 N -0.387 5.387 25 C 0.128 3.872 26 C -0.073 4.073 27 C -0.117 4.117 28 C 0.112 3.888 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.342 0.658 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.405 0.595 40 H 0.217 0.783 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.143 0.857 45 H 0.105 0.895 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.062 4.112 -19.677 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.044 3.956 3 H 0.085 0.915 4 C -0.073 4.073 5 N -0.321 5.321 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.210 5.210 10 C -0.462 4.462 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.200 1.200 16 H -0.196 1.196 17 H -0.195 1.195 18 N -0.363 5.363 19 C 0.387 3.613 20 O -0.467 6.467 21 C -0.326 4.326 22 C -0.100 4.100 23 N -0.127 5.127 24 N -0.166 5.166 25 C -0.007 4.007 26 C -0.112 4.112 27 C -0.155 4.155 28 C -0.006 4.006 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.241 0.759 40 H 0.233 0.767 41 H 0.134 0.866 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.161 0.839 45 H 0.124 0.876 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.182 4.723 -20.924 26.870 hybrid contribution 0.524 -1.210 1.156 1.754 sum -15.659 3.512 -19.769 25.462 Atomic orbital electron populations 1.22057 0.93112 1.03104 1.02672 1.20984 0.94746 0.96894 0.82973 0.91488 1.22374 0.86084 1.00638 0.98158 1.59990 1.10374 1.57609 1.04146 1.21557 0.90041 0.99222 0.95865 1.20980 0.90832 0.82082 0.83767 1.90509 1.72913 1.52723 1.35031 1.41925 1.06802 1.51643 1.20676 1.19664 0.83152 1.36750 1.06631 0.90623 1.26007 1.04787 0.95888 0.94541 1.69671 1.38143 1.38560 1.09650 0.84901 0.77072 0.78334 0.78214 1.20017 1.19582 1.19466 1.45699 1.67360 1.14117 1.09109 1.17349 0.75930 0.85391 0.82648 1.90700 1.53355 1.16872 1.85809 1.19623 1.23078 0.95564 0.94332 1.24460 0.95228 0.95142 0.95134 1.77120 1.26089 1.04636 1.04843 1.50550 1.48354 1.06432 1.11250 1.23133 0.92606 0.93854 0.91150 1.21177 1.03755 0.91175 0.95048 1.22940 1.02395 0.91815 0.98396 1.22955 1.05453 0.95074 0.77139 0.93546 0.90887 0.89814 0.88139 0.92188 0.83847 0.87535 0.90847 0.76867 0.91293 0.75932 0.76692 0.86630 0.88658 0.88963 0.83922 0.87641 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.48 71.98 0.68 -1.96 16 2 C 0.15 3.36 2.88 44.99 0.13 3.49 16 3 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16 4 C 0.06 1.19 5.30 86.30 0.46 1.64 16 5 N -0.69 -21.26 6.12 -517.93 -3.17 -24.43 16 6 C 0.07 2.16 6.17 85.56 0.53 2.69 16 7 C 0.44 20.81 7.82 87.66 0.69 21.49 16 8 O -0.63 -35.40 15.78 -3.07 -0.05 -35.45 16 9 N -0.57 -29.46 5.29 -307.00 -1.62 -31.08 16 10 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 11 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 13 N -0.92 -49.64 13.05 21.66 0.28 -49.36 16 14 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 18 N -0.71 -16.70 4.35 -445.80 -1.94 -18.64 16 19 C 0.60 17.32 7.78 86.67 0.67 17.99 16 20 O -0.59 -20.47 16.56 -4.03 -0.07 -20.53 16 21 C -0.31 -8.30 6.13 -20.13 -0.12 -8.43 16 22 C 0.09 2.12 11.50 85.65 0.98 3.10 16 23 N -0.31 -8.16 12.64 -56.42 -0.71 -8.88 16 24 N -0.39 -8.47 4.81 -328.35 -1.58 -10.05 16 25 C 0.13 3.00 7.31 42.44 0.31 3.31 16 26 C -0.07 -1.09 6.86 30.60 0.21 -0.88 16 27 C -0.12 -0.82 7.18 31.59 0.23 -0.59 16 28 C 0.11 1.22 7.78 86.70 0.67 1.89 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.34 11.18 7.28 -89.69 -0.65 10.53 16 35 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 38 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 39 H 0.40 7.69 7.11 -92.71 -0.66 7.03 16 40 H 0.22 3.73 7.50 -2.91 -0.02 3.70 16 41 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.14 -0.04 8.14 -2.38 -0.02 -0.06 16 45 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -83.45 389.50 -1.11 -84.56 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: -1.01 Total: 43.13 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 6.72 Total: 25.28 kcal Atomic # 7 Polarization: -133.70 SS G_CDS: -8.74 Total: -142.44 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.12 Total: -55.98 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -83.45 -1.11 -84.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715977048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.099 kcal (2) G-P(sol) polarization free energy of solvation -83.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds