Wall clock time and date at job start Tue Mar 31 2020 18:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46924 * 2 1 4 4 C 1.52998 * 109.46794 * 119.99823 * 2 1 3 5 5 N 1.46503 * 109.46777 * 174.99730 * 4 2 1 6 6 C 1.46500 * 119.99810 * 90.00291 * 5 4 2 7 7 C 1.36940 * 120.00082 * 270.00069 * 5 4 2 8 8 H 1.07996 * 120.00098 * 22.01244 * 7 5 4 9 9 C 1.38812 * 119.99800 * 202.01447 * 7 5 4 10 10 N 1.31614 * 120.00119 * 14.22182 * 9 7 5 11 11 Si 1.86799 * 119.99786 * 194.21431 * 9 7 5 12 12 H 1.48495 * 109.46974 * 90.00699 * 11 9 7 13 13 H 1.48506 * 109.47155 * 210.00431 * 11 9 7 14 14 H 1.48501 * 109.47404 * 330.00056 * 11 9 7 15 15 N 1.46498 * 109.47085 * 240.00052 * 2 1 3 16 16 C 1.34774 * 120.00484 * 85.00205 * 15 2 1 17 17 O 1.21287 * 119.99348 * 0.27214 * 16 15 2 18 18 C 1.50694 * 120.00540 * 180.02562 * 16 15 2 19 19 H 1.09004 * 110.85239 * 303.78713 * 18 16 15 20 20 C 1.54628 * 110.97403 * 67.61652 * 18 16 15 21 21 C 1.51281 * 104.19255 * 93.32231 * 20 18 16 22 22 O 1.21305 * 124.94227 * 196.21675 * 21 20 18 23 23 N 1.34423 * 110.11909 * 16.25618 * 21 20 18 24 24 C 1.40753 * 124.35399 * 180.42734 * 23 21 20 25 25 C 1.40255 * 126.08570 * 179.67053 * 24 23 21 26 26 N 1.30823 * 108.33836 * 179.81608 * 25 24 23 27 27 N 1.40071 * 108.36980 * 0.43657 * 26 25 24 28 28 H 0.97001 * 126.05539 * 179.69267 * 27 26 25 29 29 C 1.35760 * 126.07874 * 359.97438 * 24 23 21 30 30 C 1.46767 * 111.29752 * 0.40745 * 23 21 20 31 31 H 1.09006 * 109.46867 * 60.00080 * 1 2 3 32 32 H 1.08989 * 109.47264 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46907 * 300.00606 * 1 2 3 34 34 H 1.08994 * 109.47118 * 295.00218 * 4 2 1 35 35 H 1.09004 * 109.47002 * 55.00158 * 4 2 1 36 36 H 1.09002 * 109.46803 * 95.13658 * 6 5 4 37 37 H 1.08999 * 109.47306 * 215.13783 * 6 5 4 38 38 H 1.08993 * 109.46938 * 335.14181 * 6 5 4 39 39 H 0.97006 * 120.00413 * 180.02562 * 10 9 7 40 40 H 0.97001 * 120.00135 * 265.00729 * 15 2 1 41 41 H 1.08998 * 110.48936 * 212.00185 * 20 18 16 42 42 H 1.08999 * 110.48221 * 334.64987 * 20 18 16 43 43 H 1.08001 * 125.82433 * 359.97438 * 25 24 23 44 44 H 1.07997 * 126.22042 * 359.97438 * 29 24 23 45 45 H 1.09001 * 110.24460 * 223.98703 * 30 23 21 46 46 H 1.08994 * 110.24370 * 101.98227 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3343 0.2340 1.7613 7 6 4.0849 -1.9159 0.6023 8 1 3.5311 -2.5056 -0.1132 9 6 5.3896 -2.2624 0.9256 10 7 5.9682 -1.7336 1.9829 11 14 6.3241 -3.4794 -0.1397 12 1 7.0473 -2.7469 -1.2100 13 1 7.2997 -4.2229 0.6974 14 1 5.3683 -4.4361 -0.7533 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3571 17 8 1.8634 1.1597 -2.4103 18 6 2.6489 -0.7288 -3.5877 19 1 3.6198 -1.1882 -3.4018 20 6 1.6241 -1.7781 -4.0775 21 6 0.7956 -1.0365 -5.1033 22 8 -0.2817 -1.4036 -5.5231 23 7 1.4271 0.0879 -5.4825 24 6 0.9185 1.0072 -6.4192 25 6 1.5420 2.1924 -6.8359 26 7 0.7692 2.7770 -7.7148 27 7 -0.3790 1.9928 -7.8840 28 1 -1.1235 2.1903 -8.4735 29 6 -0.2656 0.9072 -7.0758 30 6 2.7149 0.2341 -4.7939 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0275 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.7516 -0.1583 2.1369 35 1 1.6053 -1.7198 1.2952 36 1 4.6181 -0.0349 2.7788 37 1 5.2313 0.3569 1.1543 38 1 3.7742 1.1689 1.7754 39 1 6.8801 -1.9754 2.2087 40 1 2.2490 -1.6318 -1.1527 41 1 2.1346 -2.6237 -4.5385 42 1 0.9974 -2.1137 -3.2513 43 1 2.4981 2.5584 -6.4919 44 1 -0.9861 0.1091 -6.9744 45 1 2.8446 1.2604 -4.4505 46 1 3.5318 -0.0484 -5.4579 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716478259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:41 Heat of formation + Delta-G solvation = 37.487271 kcal Electronic energy + Delta-G solvation = -29820.379880 eV Core-core repulsion = 25747.844467 eV Total energy + Delta-G solvation = -4072.535413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.68427 -40.51956 -39.00269 -36.77780 -36.05805 -34.11152 -33.30342 -31.51662 -31.32818 -30.17542 -28.61316 -27.87423 -26.24884 -25.68046 -23.96662 -22.85586 -21.84287 -21.37879 -20.18977 -19.83616 -19.45280 -18.26004 -17.63061 -16.66257 -16.49587 -15.78200 -15.56761 -15.21161 -15.12933 -14.82010 -14.66072 -14.37121 -13.87774 -13.83614 -13.76425 -13.42113 -13.09613 -12.99258 -12.86486 -12.63219 -12.11147 -11.95188 -11.89914 -11.67843 -11.63129 -11.18427 -11.12088 -10.92302 -10.90557 -10.51192 -10.45994 -10.37351 -10.06975 -9.97298 -9.95359 -9.84765 -9.45198 -8.64710 -8.52155 -7.84670 -6.83198 -5.81205 -3.27857 1.60932 2.11407 2.40653 2.89786 2.95553 3.03862 3.28420 3.32767 3.37928 3.51486 4.08782 4.20057 4.38975 4.63844 4.70663 4.79115 4.91107 5.23631 5.27370 5.30719 5.33221 5.37665 5.41385 5.50873 5.55918 5.63337 5.68808 5.77768 5.89462 5.93114 6.10102 6.15684 6.40623 6.43143 6.64167 6.71154 6.77643 6.87947 7.03180 7.03415 7.31937 7.40598 7.59992 7.70738 7.97954 8.00751 8.28573 8.62756 9.12916 9.77128 10.27555 11.23001 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015535 B = 0.003208 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.950302 B = 8727.269889 C = 9338.123287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.163 3.837 7 C -0.254 4.254 8 H 0.066 0.934 9 C 0.004 3.996 10 N -0.902 5.902 11 Si 0.899 3.101 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.278 1.278 15 N -0.690 5.690 16 C 0.520 3.480 17 O -0.548 6.548 18 C -0.127 4.127 19 H 0.132 0.868 20 C -0.140 4.140 21 C 0.517 3.483 22 O -0.529 6.529 23 N -0.527 5.527 24 C 0.016 3.984 25 C 0.046 3.954 26 N -0.280 5.280 27 N -0.476 5.476 28 H 0.444 0.556 29 C 0.038 3.962 30 C 0.117 3.883 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.030 0.970 37 H 0.040 0.960 38 H -0.002 1.002 39 H 0.253 0.747 40 H 0.404 0.596 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.188 0.812 44 H 0.190 0.810 45 H 0.104 0.896 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.951 2.538 -14.084 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.018 3.982 7 C -0.384 4.384 8 H 0.083 0.917 9 C -0.195 4.195 10 N -0.546 5.546 11 Si 0.729 3.271 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.204 1.204 15 N -0.340 5.340 16 C 0.304 3.696 17 O -0.427 6.427 18 C -0.149 4.149 19 H 0.150 0.850 20 C -0.181 4.181 21 C 0.306 3.694 22 O -0.405 6.405 23 N -0.253 5.253 24 C -0.086 4.086 25 C -0.143 4.143 26 N -0.103 5.103 27 N -0.188 5.188 28 H 0.288 0.712 29 C -0.110 4.110 30 C -0.006 4.006 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.063 0.937 40 H 0.240 0.760 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.205 0.795 44 H 0.207 0.793 45 H 0.122 0.878 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.650 4.146 -14.972 18.288 hybrid contribution 0.647 -1.729 -0.098 1.848 sum -9.003 2.418 -15.070 17.720 Atomic orbital electron populations 1.22125 0.96509 1.01494 1.01672 1.21893 0.92175 0.98310 0.86548 0.90413 1.21058 0.86143 0.98283 0.93258 1.43834 0.98834 1.21096 1.68323 1.20778 0.92844 0.86268 0.98278 1.19000 0.96778 1.05170 1.17437 0.91670 1.25004 0.98857 0.98897 0.96764 1.70069 1.13688 1.46208 1.24670 0.86346 0.80064 0.80749 0.79909 1.21449 1.21786 1.20380 1.45895 1.64999 1.14424 1.08696 1.19971 0.77954 0.87180 0.84476 1.90670 1.51127 1.15787 1.85116 1.22372 1.02132 0.96599 0.93811 0.84980 1.22310 0.97977 0.98390 0.99393 1.20898 0.85400 0.80744 0.82344 1.90650 1.20769 1.70085 1.59038 1.45098 1.20452 1.20598 1.39178 1.17571 0.96374 0.94543 1.00147 1.23698 1.00825 0.93003 0.96748 1.77254 0.95052 1.17830 1.20185 1.46115 1.18357 1.17795 1.36524 0.71173 1.22507 0.99067 0.93881 0.95584 1.22125 0.83977 1.02607 0.91885 0.93006 0.92827 0.92050 0.93004 0.92960 0.95134 0.94123 0.98392 0.93667 0.75952 0.86265 0.87107 0.79524 0.79279 0.87817 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 2 C 0.12 1.95 2.88 -67.93 -0.20 1.76 16 3 H 0.08 1.47 7.57 -51.93 -0.39 1.08 16 4 C 0.14 2.57 5.30 -4.04 -0.02 2.55 16 5 N -0.60 -13.52 2.82 -181.12 -0.51 -14.03 16 6 C 0.16 3.82 8.98 59.85 0.54 4.36 16 7 C -0.25 -6.09 8.85 -15.06 -0.13 -6.23 16 8 H 0.07 1.44 6.23 -52.49 -0.33 1.11 16 9 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16 10 N -0.90 -24.81 10.72 55.49 0.59 -24.22 16 11 Si 0.90 19.80 29.58 -169.99 -5.03 14.77 16 12 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 15 N -0.69 -10.84 4.41 -53.81 -0.24 -11.07 16 16 C 0.52 8.04 7.05 -10.99 -0.08 7.96 16 17 O -0.55 -10.22 15.19 5.55 0.08 -10.14 16 18 C -0.13 -1.45 3.54 -90.14 -0.32 -1.77 16 19 H 0.13 1.30 8.14 -51.93 -0.42 0.87 16 20 C -0.14 -1.47 6.40 -26.74 -0.17 -1.64 16 21 C 0.52 6.90 7.98 -10.86 -0.09 6.81 16 22 O -0.53 -8.30 15.64 5.54 0.09 -8.22 16 23 N -0.53 -6.58 3.16 -112.48 -0.36 -6.94 16 24 C 0.02 0.21 6.80 -83.89 -0.57 -0.36 16 25 C 0.05 0.53 11.53 -17.22 -0.20 0.33 16 26 N -0.28 -3.38 12.69 30.70 0.39 -2.99 16 27 N -0.48 -4.76 7.40 30.69 0.23 -4.53 16 28 H 0.44 2.83 8.96 -182.62 -1.64 1.19 16 29 C 0.04 0.44 11.18 -16.68 -0.19 0.25 16 30 C 0.12 1.26 6.26 -3.12 -0.02 1.24 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.69 8.14 -51.94 -0.42 0.27 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 35 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 36 H 0.03 0.78 7.36 -51.93 -0.38 0.39 16 37 H 0.04 1.03 7.31 -51.93 -0.38 0.65 16 38 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 39 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.40 6.11 6.51 -40.82 -0.27 5.84 16 41 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.11 1.17 7.84 -51.93 -0.41 0.76 16 43 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.19 2.15 6.51 -52.49 -0.34 1.81 16 45 H 0.10 1.24 7.00 -51.93 -0.36 0.88 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -33.20 378.87 -8.06 -41.26 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.84 Total: 7.02 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: -1.18 Total: 13.37 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.11 Total: -63.78 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.17 Total: -18.36 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.20 -8.06 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716478259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.745 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds