Wall clock time and date at job start Tue Mar 31 2020 18:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46924 * 2 1 4 4 C 1.52998 * 109.46794 * 119.99823 * 2 1 3 5 5 N 1.46503 * 109.46777 * 174.99730 * 4 2 1 6 6 C 1.46500 * 119.99810 * 90.00291 * 5 4 2 7 7 C 1.36940 * 120.00082 * 270.00069 * 5 4 2 8 8 H 1.07996 * 120.00098 * 22.01244 * 7 5 4 9 9 C 1.38812 * 119.99800 * 202.01447 * 7 5 4 10 10 N 1.31614 * 120.00119 * 14.22182 * 9 7 5 11 11 Si 1.86799 * 119.99786 * 194.21431 * 9 7 5 12 12 H 1.48495 * 109.46974 * 90.00699 * 11 9 7 13 13 H 1.48506 * 109.47155 * 210.00431 * 11 9 7 14 14 H 1.48501 * 109.47404 * 330.00056 * 11 9 7 15 15 N 1.46498 * 109.47085 * 240.00052 * 2 1 3 16 16 C 1.34774 * 120.00484 * 85.00205 * 15 2 1 17 17 O 1.21287 * 119.99348 * 0.27214 * 16 15 2 18 18 C 1.50694 * 120.00540 * 180.02562 * 16 15 2 19 19 H 1.09004 * 110.85239 * 303.78713 * 18 16 15 20 20 C 1.54628 * 110.97403 * 67.61652 * 18 16 15 21 21 C 1.51281 * 104.19255 * 93.32231 * 20 18 16 22 22 O 1.21305 * 124.94227 * 196.21675 * 21 20 18 23 23 N 1.34423 * 110.11909 * 16.25618 * 21 20 18 24 24 C 1.40753 * 124.35399 * 180.42734 * 23 21 20 25 25 C 1.40255 * 126.08570 * 179.67053 * 24 23 21 26 26 N 1.30823 * 108.33836 * 179.81608 * 25 24 23 27 27 N 1.40071 * 108.36980 * 0.43657 * 26 25 24 28 28 H 0.97001 * 126.05539 * 179.69267 * 27 26 25 29 29 C 1.35760 * 126.07874 * 359.97438 * 24 23 21 30 30 C 1.46767 * 111.29752 * 0.40745 * 23 21 20 31 31 H 1.09006 * 109.46867 * 60.00080 * 1 2 3 32 32 H 1.08989 * 109.47264 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46907 * 300.00606 * 1 2 3 34 34 H 1.08994 * 109.47118 * 295.00218 * 4 2 1 35 35 H 1.09004 * 109.47002 * 55.00158 * 4 2 1 36 36 H 1.09002 * 109.46803 * 95.13658 * 6 5 4 37 37 H 1.08999 * 109.47306 * 215.13783 * 6 5 4 38 38 H 1.08993 * 109.46938 * 335.14181 * 6 5 4 39 39 H 0.97006 * 120.00413 * 180.02562 * 10 9 7 40 40 H 0.97001 * 120.00135 * 265.00729 * 15 2 1 41 41 H 1.08998 * 110.48936 * 212.00185 * 20 18 16 42 42 H 1.08999 * 110.48221 * 334.64987 * 20 18 16 43 43 H 1.08001 * 125.82433 * 359.97438 * 25 24 23 44 44 H 1.07997 * 126.22042 * 359.97438 * 29 24 23 45 45 H 1.09001 * 110.24460 * 223.98703 * 30 23 21 46 46 H 1.08994 * 110.24370 * 101.98227 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3343 0.2340 1.7613 7 6 4.0849 -1.9159 0.6023 8 1 3.5311 -2.5056 -0.1132 9 6 5.3896 -2.2624 0.9256 10 7 5.9682 -1.7336 1.9829 11 14 6.3241 -3.4794 -0.1397 12 1 7.0473 -2.7469 -1.2100 13 1 7.2997 -4.2229 0.6974 14 1 5.3683 -4.4361 -0.7533 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3571 17 8 1.8634 1.1597 -2.4103 18 6 2.6489 -0.7288 -3.5877 19 1 3.6198 -1.1882 -3.4018 20 6 1.6241 -1.7781 -4.0775 21 6 0.7956 -1.0365 -5.1033 22 8 -0.2817 -1.4036 -5.5231 23 7 1.4271 0.0879 -5.4825 24 6 0.9185 1.0072 -6.4192 25 6 1.5420 2.1924 -6.8359 26 7 0.7692 2.7770 -7.7148 27 7 -0.3790 1.9928 -7.8840 28 1 -1.1235 2.1903 -8.4735 29 6 -0.2656 0.9072 -7.0758 30 6 2.7149 0.2341 -4.7939 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0275 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.7516 -0.1583 2.1369 35 1 1.6053 -1.7198 1.2952 36 1 4.6181 -0.0349 2.7788 37 1 5.2313 0.3569 1.1543 38 1 3.7742 1.1689 1.7754 39 1 6.8801 -1.9754 2.2087 40 1 2.2490 -1.6318 -1.1527 41 1 2.1346 -2.6237 -4.5385 42 1 0.9974 -2.1137 -3.2513 43 1 2.4981 2.5584 -6.4919 44 1 -0.9861 0.1091 -6.9744 45 1 2.8446 1.2604 -4.4505 46 1 3.5318 -0.0484 -5.4579 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716478259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:40 Heat of formation + Delta-G solvation = 14.425234 kcal Electronic energy + Delta-G solvation = -29821.379925 eV Core-core repulsion = 25747.844467 eV Total energy + Delta-G solvation = -4073.535458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.58964 -41.50495 -40.17999 -38.14555 -37.26393 -35.67107 -34.27124 -33.01242 -32.34606 -31.56450 -29.53820 -28.76028 -28.01395 -27.34142 -25.02087 -23.77578 -23.36820 -22.37632 -21.53905 -21.02496 -20.39569 -19.16379 -18.88242 -18.24985 -17.46964 -16.97046 -16.87013 -16.68181 -16.14901 -15.91882 -15.54186 -15.52179 -15.37426 -15.01370 -14.92018 -14.69757 -14.51439 -14.22104 -13.79285 -13.74953 -13.58956 -13.22919 -13.03061 -12.85960 -12.79551 -12.61770 -12.51454 -12.47245 -12.14749 -12.07943 -11.95809 -11.81737 -11.70370 -11.40879 -10.96424 -10.72071 -10.68341 -10.52647 -9.83620 -8.75908 -8.69218 -7.71232 -5.19441 0.71290 1.18009 1.57748 1.57939 1.58157 1.66546 1.75003 2.03006 2.19443 2.37715 2.60873 3.21562 3.30871 3.43335 3.70132 3.77424 3.82650 3.90288 3.98699 4.16295 4.41800 4.44721 4.45940 4.52361 4.54453 4.57367 4.70994 4.78201 4.81752 4.86859 4.89285 4.91248 5.02999 5.07620 5.19239 5.32735 5.46556 5.68601 5.73965 5.74486 5.80880 5.98564 6.26988 6.39916 6.56616 6.77259 7.03011 7.22020 7.43391 7.94734 8.42449 9.32792 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015535 B = 0.003208 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.950302 B = 8727.269889 C = 9338.123287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.127 3.873 3 H 0.051 0.949 4 C 0.142 3.858 5 N -0.612 5.612 6 C 0.178 3.822 7 C -0.243 4.243 8 H 0.090 0.910 9 C -0.060 4.060 10 N -0.945 5.945 11 Si 0.961 3.039 12 H -0.287 1.287 13 H -0.312 1.312 14 H -0.252 1.252 15 N -0.691 5.691 16 C 0.513 3.487 17 O -0.585 6.585 18 C -0.120 4.120 19 H 0.158 0.842 20 C -0.130 4.130 21 C 0.505 3.495 22 O -0.562 6.562 23 N -0.528 5.528 24 C -0.009 4.009 25 C 0.044 3.956 26 N -0.299 5.299 27 N -0.463 5.463 28 H 0.458 0.542 29 C 0.038 3.962 30 C 0.116 3.884 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.004 0.996 37 H 0.012 0.988 38 H 0.019 0.981 39 H 0.243 0.757 40 H 0.409 0.591 41 H 0.154 0.846 42 H 0.111 0.889 43 H 0.206 0.794 44 H 0.191 0.809 45 H 0.089 0.911 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.595 1.282 -15.589 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 H 0.069 0.931 4 C 0.015 3.985 5 N -0.335 5.335 6 C 0.033 3.967 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.254 4.254 10 N -0.592 5.592 11 Si 0.790 3.210 12 H -0.214 1.214 13 H -0.240 1.240 14 H -0.176 1.176 15 N -0.342 5.342 16 C 0.300 3.700 17 O -0.466 6.466 18 C -0.141 4.141 19 H 0.175 0.825 20 C -0.170 4.170 21 C 0.295 3.705 22 O -0.441 6.441 23 N -0.253 5.253 24 C -0.112 4.112 25 C -0.144 4.144 26 N -0.122 5.122 27 N -0.177 5.177 28 H 0.305 0.695 29 C -0.111 4.111 30 C -0.006 4.006 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.022 0.978 37 H 0.031 0.969 38 H 0.038 0.962 39 H 0.052 0.948 40 H 0.246 0.754 41 H 0.172 0.828 42 H 0.130 0.870 43 H 0.223 0.777 44 H 0.208 0.792 45 H 0.107 0.893 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.342 2.896 -16.516 19.701 hybrid contribution 0.735 -1.249 0.383 1.499 sum -9.607 1.648 -16.134 18.849 Atomic orbital electron populations 1.22010 0.94362 1.02536 1.01741 1.21603 0.93673 0.96519 0.86228 0.93111 1.21206 0.83555 0.99270 0.94434 1.44069 1.00624 1.20584 1.68180 1.20472 0.92401 0.87601 0.96230 1.19531 0.96621 1.04523 1.16627 0.89230 1.25806 1.00269 1.01298 0.98067 1.70262 1.13392 1.48616 1.26941 0.85347 0.78709 0.78976 0.77989 1.21363 1.23991 1.17576 1.45903 1.65036 1.14556 1.08656 1.20686 0.77043 0.86888 0.85392 1.90657 1.52601 1.17585 1.85787 1.22391 1.03222 0.96670 0.91813 0.82495 1.22360 0.97353 0.98615 0.98645 1.21442 0.85301 0.81082 0.82676 1.90627 1.22162 1.70978 1.60351 1.45227 1.20898 1.20279 1.38885 1.17879 0.97102 0.95291 1.00950 1.24016 1.01462 0.92603 0.96362 1.77214 0.95758 1.18494 1.20743 1.46154 1.18354 1.16988 1.36189 0.69478 1.22587 0.98909 0.94100 0.95533 1.22281 0.84273 1.01834 0.92223 0.94351 0.91237 0.90580 0.92162 0.91816 0.97797 0.96895 0.96237 0.94827 0.75407 0.82846 0.87027 0.77700 0.79249 0.89254 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.48 71.98 0.68 -3.16 16 2 C 0.13 4.00 2.88 44.99 0.13 4.13 16 3 H 0.05 1.89 7.57 -2.39 -0.02 1.87 16 4 C 0.14 4.90 5.30 86.38 0.46 5.36 16 5 N -0.61 -27.02 2.82 -726.95 -2.05 -29.07 16 6 C 0.18 8.44 8.98 127.77 1.15 9.59 16 7 C -0.24 -11.22 8.85 84.03 0.74 -10.48 16 8 H 0.09 3.63 6.23 -2.91 -0.02 3.61 16 9 C -0.06 -3.03 5.08 84.86 0.43 -2.60 16 10 N -0.94 -52.98 10.72 21.65 0.23 -52.74 16 11 Si 0.96 39.84 29.58 68.60 2.03 41.87 16 12 H -0.29 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.31 -13.91 7.11 99.48 0.71 -13.20 16 14 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 15 N -0.69 -20.24 4.41 -442.54 -1.95 -22.20 16 16 C 0.51 15.00 7.05 87.66 0.62 15.62 16 17 O -0.59 -21.51 15.19 -3.05 -0.05 -21.56 16 18 C -0.12 -2.37 3.54 -10.48 -0.04 -2.41 16 19 H 0.16 2.39 8.14 -2.38 -0.02 2.37 16 20 C -0.13 -2.30 6.40 30.59 0.20 -2.11 16 21 C 0.50 12.57 7.98 87.90 0.70 13.28 16 22 O -0.56 -17.13 15.64 -3.11 -0.05 -17.17 16 23 N -0.53 -12.32 3.16 -628.35 -1.99 -14.30 16 24 C -0.01 -0.23 6.80 37.62 0.26 0.03 16 25 C 0.04 0.97 11.53 85.33 0.98 1.95 16 26 N -0.30 -6.90 12.69 -56.77 -0.72 -7.62 16 27 N -0.46 -8.82 7.40 -56.81 -0.42 -9.24 16 28 H 0.46 5.37 8.96 -213.34 -1.91 3.45 16 29 C 0.04 0.85 11.18 83.50 0.93 1.79 16 30 C 0.12 2.21 6.26 86.83 0.54 2.76 16 31 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 35 H 0.06 2.08 8.04 -2.38 -0.02 2.06 16 36 H 0.00 0.20 7.36 -2.39 -0.02 0.18 16 37 H 0.01 0.65 7.31 -2.39 -0.02 0.63 16 38 H 0.02 0.81 8.03 -2.39 -0.02 0.79 16 39 H 0.24 13.49 8.31 -92.70 -0.77 12.72 16 40 H 0.41 11.08 6.51 -92.71 -0.60 10.48 16 41 H 0.15 1.70 8.14 -2.39 -0.02 1.69 16 42 H 0.11 2.01 7.84 -2.39 -0.02 1.99 16 43 H 0.21 3.47 8.06 -2.91 -0.02 3.45 16 44 H 0.19 4.25 6.51 -2.91 -0.02 4.24 16 45 H 0.09 2.02 7.00 -2.39 -0.02 2.00 16 46 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -73.03 378.87 1.33 -71.69 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -1.49 Total: 26.60 kcal Atomic # 6 Polarization: 25.96 SS G_CDS: 7.79 Total: 33.74 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -6.90 Total: -135.17 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -0.09 Total: -38.73 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -73.03 1.33 -71.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716478259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.120 kcal (2) G-P(sol) polarization free energy of solvation -73.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds