Wall clock time and date at job start Tue Mar 31 2020 18:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47067 * 2 1 4 4 C 1.53010 * 109.46929 * 119.99574 * 2 1 3 5 5 N 1.46502 * 109.46860 * 174.99987 * 4 2 1 6 6 C 1.46496 * 120.00002 * 270.00061 * 5 4 2 7 7 C 1.36936 * 119.99564 * 90.00171 * 5 4 2 8 8 H 1.08004 * 120.00129 * 23.76177 * 7 5 4 9 9 C 1.38817 * 119.99663 * 203.75850 * 7 5 4 10 10 N 1.31610 * 120.00058 * 10.97335 * 9 7 5 11 11 Si 1.86800 * 119.99720 * 190.97048 * 9 7 5 12 12 H 1.48501 * 109.47377 * 60.00385 * 11 9 7 13 13 H 1.48495 * 109.46915 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47210 * 300.00054 * 11 9 7 15 15 N 1.46496 * 109.47424 * 239.99316 * 2 1 3 16 16 C 1.34776 * 119.99730 * 84.99930 * 15 2 1 17 17 O 1.21283 * 120.00319 * 0.02562 * 16 15 2 18 18 C 1.50702 * 120.00304 * 179.97438 * 16 15 2 19 19 H 1.09002 * 110.85059 * 56.21167 * 18 16 15 20 20 C 1.54783 * 111.20077 * 292.43149 * 18 16 15 21 21 C 1.51281 * 104.11588 * 266.91283 * 20 18 16 22 22 O 1.21312 * 124.93897 * 163.67869 * 21 20 18 23 23 N 1.34411 * 110.11915 * 343.41078 * 21 20 18 24 24 C 1.40764 * 124.35102 * 179.80129 * 23 21 20 25 25 C 1.40259 * 126.08171 * 179.71726 * 24 23 21 26 26 N 1.30833 * 108.33427 * 179.81348 * 25 24 23 27 27 N 1.40065 * 108.36764 * 0.44157 * 26 25 24 28 28 H 0.97005 * 126.05212 * 179.73568 * 27 26 25 29 29 C 1.35752 * 126.08106 * 0.02562 * 24 23 21 30 30 C 1.46758 * 111.30217 * 359.81957 * 23 21 20 31 31 H 1.08997 * 109.47549 * 300.00434 * 1 2 3 32 32 H 1.08999 * 109.46879 * 60.00960 * 1 2 3 33 33 H 1.09002 * 109.46883 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46753 * 295.00126 * 4 2 1 35 35 H 1.09000 * 109.46707 * 55.00173 * 4 2 1 36 36 H 1.08995 * 109.47266 * 94.85712 * 6 5 4 37 37 H 1.09005 * 109.46754 * 214.85789 * 6 5 4 38 38 H 1.09001 * 109.46993 * 334.85662 * 6 5 4 39 39 H 0.97004 * 120.00142 * 179.97438 * 10 9 7 40 40 H 0.96996 * 120.00807 * 265.00117 * 15 2 1 41 41 H 1.09001 * 110.61421 * 148.21617 * 20 18 16 42 42 H 1.08995 * 110.43362 * 25.52009 * 20 18 16 43 43 H 1.07998 * 125.83183 * 359.97438 * 25 24 23 44 44 H 1.08005 * 126.21807 * 359.97438 * 29 24 23 45 45 H 1.09005 * 110.24894 * 136.01508 * 30 23 21 46 46 H 1.08997 * 110.25035 * 257.92802 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5001 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5614 7 6 4.2798 0.1649 1.7241 8 1 3.8840 0.8057 2.4983 9 6 5.5789 0.3462 1.2698 10 7 5.9915 -0.2807 0.1887 11 14 6.7414 1.4802 2.1930 12 1 6.9131 0.9877 3.5834 13 1 8.0592 1.5016 1.5087 14 1 6.1760 2.8531 2.2203 15 7 2.0184 -0.6907 -1.1960 16 6 2.1471 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6501 -0.7287 -3.5874 19 1 2.0313 -1.5969 -3.8144 20 6 4.1349 -1.1368 -3.4304 21 6 4.9010 0.0178 -4.0375 22 8 6.0835 0.2311 -3.8707 23 7 4.0822 0.7695 -4.7931 24 6 4.4836 1.9225 -5.4938 25 6 3.6631 2.7293 -6.2957 26 7 4.3890 3.7065 -6.7752 27 7 5.6999 3.5538 -6.3060 28 1 6.4498 4.1352 -6.5077 29 6 5.7350 2.4481 -5.5182 30 6 2.7158 0.2341 -4.7936 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.7516 -0.1582 2.1370 35 1 1.6053 -1.7197 1.2953 36 1 4.3584 -1.7623 -0.4784 37 1 5.0442 -2.2422 1.0925 38 1 3.4404 -2.8384 0.6020 39 1 6.8992 -0.1538 -0.1290 40 1 2.2491 -1.6318 -1.1525 41 1 4.3391 -2.0586 -3.9751 42 1 4.3888 -1.2511 -2.3766 43 1 2.6111 2.5724 -6.4830 44 1 6.6011 2.0580 -5.0042 45 1 1.9941 1.0417 -4.6713 46 1 2.5227 -0.3064 -5.7203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716478260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:45 Heat of formation + Delta-G solvation = 40.136272 kcal Electronic energy + Delta-G solvation = -30597.505963 eV Core-core repulsion = 26525.085419 eV Total energy + Delta-G solvation = -4072.420544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41000 -40.27187 -38.77704 -36.57265 -35.81399 -34.01223 -33.06202 -31.29607 -31.11580 -30.15985 -28.36442 -27.60555 -26.19899 -25.59204 -23.80752 -22.58505 -21.68181 -21.11018 -20.16714 -19.68697 -19.16912 -17.97849 -17.34188 -16.79030 -16.17402 -15.63013 -15.35702 -14.94566 -14.84350 -14.49377 -14.45150 -14.22755 -13.73110 -13.59583 -13.52513 -13.32610 -13.04410 -12.92916 -12.62329 -12.26933 -12.19858 -11.87476 -11.59383 -11.44069 -11.41465 -11.05468 -10.96883 -10.82070 -10.75997 -10.54809 -10.24035 -10.20708 -9.95825 -9.82809 -9.62027 -9.54018 -9.32484 -8.58598 -8.38483 -7.55543 -6.72340 -5.69597 -3.15708 1.86258 2.46815 2.66347 3.04668 3.22746 3.34830 3.42549 3.48224 3.49540 3.62912 4.38124 4.45820 4.54001 4.85267 4.89986 4.98945 5.12240 5.34106 5.37912 5.47386 5.51074 5.59693 5.62561 5.67154 5.73895 5.79914 5.84916 5.98204 6.08603 6.14219 6.15507 6.23182 6.45473 6.51918 6.61700 6.86914 6.95851 7.13764 7.20855 7.27329 7.30583 7.63780 7.65360 7.83934 8.05300 8.41805 8.42625 8.74053 9.26223 9.87583 10.35500 11.35649 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.004664 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.476944 B = 6002.296191 C = 7444.007636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.161 3.839 7 C -0.264 4.264 8 H 0.065 0.935 9 C 0.012 3.988 10 N -0.897 5.897 11 Si 0.900 3.100 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 N -0.694 5.694 16 C 0.523 3.477 17 O -0.542 6.542 18 C -0.126 4.126 19 H 0.121 0.879 20 C -0.144 4.144 21 C 0.522 3.478 22 O -0.510 6.510 23 N -0.535 5.535 24 C 0.021 3.979 25 C 0.041 3.959 26 N -0.284 5.284 27 N -0.476 5.476 28 H 0.443 0.557 29 C 0.037 3.963 30 C 0.120 3.880 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.032 0.968 37 H 0.043 0.957 38 H -0.006 1.006 39 H 0.255 0.745 40 H 0.395 0.605 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.185 0.815 44 H 0.191 0.809 45 H 0.098 0.902 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 -3.855 -11.744 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.103 0.897 4 C 0.015 3.985 5 N -0.318 5.318 6 C 0.017 3.983 7 C -0.393 4.393 8 H 0.083 0.917 9 C -0.188 4.188 10 N -0.541 5.541 11 Si 0.730 3.270 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.211 1.211 15 N -0.342 5.342 16 C 0.307 3.693 17 O -0.420 6.420 18 C -0.148 4.148 19 H 0.139 0.861 20 C -0.184 4.184 21 C 0.311 3.689 22 O -0.384 6.384 23 N -0.263 5.263 24 C -0.081 4.081 25 C -0.147 4.147 26 N -0.108 5.108 27 N -0.188 5.188 28 H 0.287 0.713 29 C -0.111 4.111 30 C -0.003 4.003 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.012 0.988 39 H 0.065 0.935 40 H 0.229 0.771 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.202 0.798 44 H 0.208 0.792 45 H 0.116 0.884 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.621 -1.891 -12.451 14.720 hybrid contribution 1.163 -0.195 0.932 1.503 sum -6.458 -2.086 -11.519 13.369 Atomic orbital electron populations 1.22144 0.96871 1.01036 1.01670 1.21889 0.91604 0.99191 0.86377 0.89723 1.21190 0.85907 0.97116 0.94314 1.43836 0.98940 1.20809 1.68206 1.20880 0.94585 0.85052 0.97808 1.19050 0.94724 1.10980 1.14588 0.91712 1.24981 0.98765 0.98810 0.96254 1.69921 1.17620 1.44908 1.21602 0.86416 0.80553 0.80890 0.79098 1.21174 1.21668 1.21121 1.45720 1.65734 1.13636 1.09160 1.19954 0.77689 0.87119 0.84491 1.90673 1.50784 1.15588 1.84966 1.22340 0.98165 0.99808 0.94473 0.86098 1.22440 0.91911 0.97621 1.06472 1.20823 0.86566 0.83826 0.77678 1.90681 1.14834 1.72627 1.60278 1.45111 1.10981 1.23679 1.46495 1.17556 0.93286 0.93411 1.03878 1.23614 1.00266 0.92893 0.97945 1.77187 0.88946 1.22216 1.22407 1.46077 1.09436 1.23180 1.40106 0.71266 1.22559 0.99665 0.90394 0.98451 1.21993 0.83475 0.97887 0.96906 0.92164 0.93005 0.93189 0.92406 0.94073 0.95044 0.93861 0.98768 0.93488 0.77063 0.87057 0.85025 0.79791 0.79219 0.88377 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 2 C 0.12 2.06 2.88 -67.93 -0.20 1.87 16 3 H 0.08 1.88 7.58 -51.93 -0.39 1.48 16 4 C 0.14 2.64 5.33 -4.04 -0.02 2.62 16 5 N -0.60 -13.73 2.78 -181.11 -0.50 -14.23 16 6 C 0.16 3.52 7.60 59.84 0.45 3.98 16 7 C -0.26 -7.05 9.66 -15.06 -0.15 -7.19 16 8 H 0.07 1.73 7.85 -52.48 -0.41 1.31 16 9 C 0.01 0.32 5.14 -17.43 -0.09 0.23 16 10 N -0.90 -25.34 10.65 55.49 0.59 -24.75 16 11 Si 0.90 22.41 29.57 -169.99 -5.03 17.39 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 15 N -0.69 -11.29 4.35 -53.80 -0.23 -11.53 16 16 C 0.52 8.77 7.07 -10.98 -0.08 8.69 16 17 O -0.54 -11.16 15.19 5.55 0.08 -11.08 16 18 C -0.13 -1.55 3.54 -90.06 -0.32 -1.87 16 19 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 20 C -0.14 -2.08 6.42 -26.66 -0.17 -2.25 16 21 C 0.52 9.41 7.97 -10.86 -0.09 9.32 16 22 O -0.51 -11.03 15.64 5.53 0.09 -10.94 16 23 N -0.54 -8.36 3.16 -112.48 -0.36 -8.71 16 24 C 0.02 0.33 6.80 -83.88 -0.57 -0.24 16 25 C 0.04 0.57 11.53 -17.22 -0.20 0.37 16 26 N -0.28 -4.05 12.69 30.71 0.39 -3.66 16 27 N -0.48 -6.13 7.40 30.69 0.23 -5.90 16 28 H 0.44 4.09 8.96 -182.62 -1.64 2.46 16 29 C 0.04 0.57 11.18 -16.68 -0.19 0.38 16 30 C 0.12 1.45 6.25 -3.13 -0.02 1.43 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.06 8.03 -51.93 -0.42 0.65 16 35 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16 36 H 0.03 0.71 5.27 -51.93 -0.27 0.44 16 37 H 0.04 1.06 7.32 -51.93 -0.38 0.68 16 38 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 39 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.40 5.75 7.18 -40.82 -0.29 5.46 16 41 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.13 2.38 6.22 -51.93 -0.32 2.05 16 43 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 44 H 0.19 3.02 6.51 -52.48 -0.34 2.68 16 45 H 0.10 1.26 7.01 -51.93 -0.36 0.90 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -35.68 376.42 -8.09 -43.76 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.74 Total: 8.50 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: -1.27 Total: 15.47 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: 0.11 Total: -68.78 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.17 Total: -22.02 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.68 -8.09 -43.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716478260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.899 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds