Wall clock time and date at job start Tue Mar 31 2020 18:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47067 * 2 1 4 4 C 1.53010 * 109.46929 * 119.99574 * 2 1 3 5 5 N 1.46502 * 109.46860 * 174.99987 * 4 2 1 6 6 C 1.46496 * 120.00002 * 270.00061 * 5 4 2 7 7 C 1.36936 * 119.99564 * 90.00171 * 5 4 2 8 8 H 1.08004 * 120.00129 * 23.76177 * 7 5 4 9 9 C 1.38817 * 119.99663 * 203.75850 * 7 5 4 10 10 N 1.31610 * 120.00058 * 10.97335 * 9 7 5 11 11 Si 1.86800 * 119.99720 * 190.97048 * 9 7 5 12 12 H 1.48501 * 109.47377 * 60.00385 * 11 9 7 13 13 H 1.48495 * 109.46915 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47210 * 300.00054 * 11 9 7 15 15 N 1.46496 * 109.47424 * 239.99316 * 2 1 3 16 16 C 1.34776 * 119.99730 * 84.99930 * 15 2 1 17 17 O 1.21283 * 120.00319 * 0.02562 * 16 15 2 18 18 C 1.50702 * 120.00304 * 179.97438 * 16 15 2 19 19 H 1.09002 * 110.85059 * 56.21167 * 18 16 15 20 20 C 1.54783 * 111.20077 * 292.43149 * 18 16 15 21 21 C 1.51281 * 104.11588 * 266.91283 * 20 18 16 22 22 O 1.21312 * 124.93897 * 163.67869 * 21 20 18 23 23 N 1.34411 * 110.11915 * 343.41078 * 21 20 18 24 24 C 1.40764 * 124.35102 * 179.80129 * 23 21 20 25 25 C 1.40259 * 126.08171 * 179.71726 * 24 23 21 26 26 N 1.30833 * 108.33427 * 179.81348 * 25 24 23 27 27 N 1.40065 * 108.36764 * 0.44157 * 26 25 24 28 28 H 0.97005 * 126.05212 * 179.73568 * 27 26 25 29 29 C 1.35752 * 126.08106 * 0.02562 * 24 23 21 30 30 C 1.46758 * 111.30217 * 359.81957 * 23 21 20 31 31 H 1.08997 * 109.47549 * 300.00434 * 1 2 3 32 32 H 1.08999 * 109.46879 * 60.00960 * 1 2 3 33 33 H 1.09002 * 109.46883 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46753 * 295.00126 * 4 2 1 35 35 H 1.09000 * 109.46707 * 55.00173 * 4 2 1 36 36 H 1.08995 * 109.47266 * 94.85712 * 6 5 4 37 37 H 1.09005 * 109.46754 * 214.85789 * 6 5 4 38 38 H 1.09001 * 109.46993 * 334.85662 * 6 5 4 39 39 H 0.97004 * 120.00142 * 179.97438 * 10 9 7 40 40 H 0.96996 * 120.00807 * 265.00117 * 15 2 1 41 41 H 1.09001 * 110.61421 * 148.21617 * 20 18 16 42 42 H 1.08995 * 110.43362 * 25.52009 * 20 18 16 43 43 H 1.07998 * 125.83183 * 359.97438 * 25 24 23 44 44 H 1.08005 * 126.21807 * 359.97438 * 29 24 23 45 45 H 1.09005 * 110.24894 * 136.01508 * 30 23 21 46 46 H 1.08997 * 110.25035 * 257.92802 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5001 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5614 7 6 4.2798 0.1649 1.7241 8 1 3.8840 0.8057 2.4983 9 6 5.5789 0.3462 1.2698 10 7 5.9915 -0.2807 0.1887 11 14 6.7414 1.4802 2.1930 12 1 6.9131 0.9877 3.5834 13 1 8.0592 1.5016 1.5087 14 1 6.1760 2.8531 2.2203 15 7 2.0184 -0.6907 -1.1960 16 6 2.1471 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6501 -0.7287 -3.5874 19 1 2.0313 -1.5969 -3.8144 20 6 4.1349 -1.1368 -3.4304 21 6 4.9010 0.0178 -4.0375 22 8 6.0835 0.2311 -3.8707 23 7 4.0822 0.7695 -4.7931 24 6 4.4836 1.9225 -5.4938 25 6 3.6631 2.7293 -6.2957 26 7 4.3890 3.7065 -6.7752 27 7 5.6999 3.5538 -6.3060 28 1 6.4498 4.1352 -6.5077 29 6 5.7350 2.4481 -5.5182 30 6 2.7158 0.2341 -4.7936 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.7516 -0.1582 2.1370 35 1 1.6053 -1.7197 1.2953 36 1 4.3584 -1.7623 -0.4784 37 1 5.0442 -2.2422 1.0925 38 1 3.4404 -2.8384 0.6020 39 1 6.8992 -0.1538 -0.1290 40 1 2.2491 -1.6318 -1.1525 41 1 4.3391 -2.0586 -3.9751 42 1 4.3888 -1.2511 -2.3766 43 1 2.6111 2.5724 -6.4830 44 1 6.6011 2.0580 -5.0042 45 1 1.9941 1.0417 -4.6713 46 1 2.5227 -0.3064 -5.7203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716478260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:44 Heat of formation + Delta-G solvation = 13.394445 kcal Electronic energy + Delta-G solvation = -30598.665575 eV Core-core repulsion = 26525.085419 eV Total energy + Delta-G solvation = -4073.580156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.55543 -41.46449 -40.12674 -38.10686 -37.22179 -35.66777 -34.23201 -32.96338 -32.34378 -31.60993 -29.51301 -28.72837 -27.90120 -27.33786 -25.00984 -23.74844 -23.28776 -22.33069 -21.59993 -20.94680 -20.39153 -19.13074 -18.74713 -18.51915 -17.36803 -17.02725 -16.88451 -16.48606 -16.16960 -15.83413 -15.58211 -15.48373 -15.37514 -15.15675 -14.84065 -14.76727 -14.47395 -14.11973 -13.77234 -13.72666 -13.46287 -13.20131 -13.01488 -12.86538 -12.79085 -12.60283 -12.58622 -12.39516 -12.23970 -12.10940 -12.00874 -11.80771 -11.61614 -11.36750 -10.88778 -10.72264 -10.65865 -10.57885 -9.82021 -8.73048 -8.64506 -7.78614 -5.22890 0.70026 1.24643 1.39885 1.41286 1.47067 1.59420 1.77385 2.06301 2.24055 2.41965 2.51330 3.29843 3.35631 3.38211 3.75099 3.80002 3.86456 3.92193 4.03914 4.24806 4.41797 4.45565 4.48861 4.54015 4.60619 4.62304 4.73268 4.83522 4.87408 4.91265 4.95757 5.00480 5.08575 5.10919 5.27855 5.45164 5.45954 5.68867 5.80491 5.82181 5.91569 6.05583 6.23829 6.37318 6.55976 6.78654 7.13306 7.22932 7.48180 7.96307 8.34744 9.20858 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.004664 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.476944 B = 6002.296191 C = 7444.007636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.124 3.876 3 H 0.028 0.972 4 C 0.142 3.858 5 N -0.610 5.610 6 C 0.171 3.829 7 C -0.262 4.262 8 H 0.060 0.940 9 C -0.041 4.041 10 N -0.911 5.911 11 Si 0.945 3.055 12 H -0.274 1.274 13 H -0.302 1.302 14 H -0.289 1.289 15 N -0.690 5.690 16 C 0.511 3.489 17 O -0.589 6.589 18 C -0.110 4.110 19 H 0.182 0.818 20 C -0.134 4.134 21 C 0.500 3.500 22 O -0.565 6.565 23 N -0.534 5.534 24 C -0.004 4.004 25 C 0.048 3.952 26 N -0.295 5.295 27 N -0.464 5.464 28 H 0.456 0.544 29 C 0.024 3.976 30 C 0.115 3.885 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.022 0.978 37 H 0.006 0.994 38 H 0.039 0.961 39 H 0.240 0.760 40 H 0.406 0.594 41 H 0.155 0.845 42 H 0.094 0.906 43 H 0.217 0.783 44 H 0.177 0.823 45 H 0.091 0.909 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.126 -5.708 -12.748 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.016 3.984 3 H 0.046 0.954 4 C 0.015 3.985 5 N -0.332 5.332 6 C 0.027 3.973 7 C -0.393 4.393 8 H 0.078 0.922 9 C -0.237 4.237 10 N -0.556 5.556 11 Si 0.775 3.225 12 H -0.199 1.199 13 H -0.228 1.228 14 H -0.216 1.216 15 N -0.339 5.339 16 C 0.298 3.702 17 O -0.470 6.470 18 C -0.131 4.131 19 H 0.199 0.801 20 C -0.174 4.174 21 C 0.290 3.710 22 O -0.444 6.444 23 N -0.260 5.260 24 C -0.107 4.107 25 C -0.140 4.140 26 N -0.118 5.118 27 N -0.178 5.178 28 H 0.303 0.697 29 C -0.124 4.124 30 C -0.006 4.006 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.040 0.960 37 H 0.025 0.975 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.242 0.758 41 H 0.173 0.827 42 H 0.113 0.887 43 H 0.233 0.767 44 H 0.194 0.806 45 H 0.109 0.891 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.550 -3.753 -13.450 17.502 hybrid contribution 1.989 0.429 1.291 2.410 sum -8.561 -3.325 -12.159 15.238 Atomic orbital electron populations 1.21993 0.93472 1.03002 1.01754 1.21600 0.94097 0.96058 0.86662 0.95351 1.21364 0.83239 0.99306 0.94563 1.44020 1.00774 1.20343 1.68088 1.20719 0.94162 0.86000 0.96458 1.19282 0.95076 1.10937 1.13972 0.92196 1.25533 1.00256 1.00620 0.97327 1.70080 1.16679 1.46252 1.22638 0.85689 0.78665 0.79427 0.78686 1.19948 1.22835 1.21622 1.45700 1.65382 1.14077 1.08735 1.20817 0.76788 0.86808 0.85778 1.90655 1.52767 1.17703 1.85828 1.22460 0.97184 1.01304 0.92114 0.80055 1.22397 0.92666 0.98043 1.04343 1.21603 0.86410 0.85073 0.77867 1.90641 1.17202 1.74250 1.62267 1.45299 1.12111 1.23141 1.45411 1.17922 0.93856 0.94176 1.04774 1.24067 1.01402 0.91791 0.96741 1.77155 0.89301 1.22583 1.22748 1.46090 1.09743 1.22654 1.39299 0.69656 1.22506 0.99673 0.91297 0.98972 1.22380 0.81172 0.98069 0.98959 0.91249 0.93835 0.90129 0.92545 0.90230 0.96027 0.97514 0.94252 0.95044 0.75765 0.82740 0.88723 0.76685 0.80645 0.89093 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.48 71.98 0.68 -2.95 16 2 C 0.12 4.23 2.88 45.00 0.13 4.36 16 3 H 0.03 1.29 7.58 -2.39 -0.02 1.27 16 4 C 0.14 4.96 5.33 86.38 0.46 5.42 16 5 N -0.61 -27.75 2.78 -726.92 -2.02 -29.77 16 6 C 0.17 7.32 7.60 127.77 0.97 8.29 16 7 C -0.26 -14.17 9.66 84.03 0.81 -13.36 16 8 H 0.06 3.24 7.85 -2.91 -0.02 3.22 16 9 C -0.04 -2.30 5.14 84.86 0.44 -1.86 16 10 N -0.91 -53.42 10.65 21.65 0.23 -53.19 16 11 Si 0.94 47.42 29.57 68.60 2.03 49.45 16 12 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.30 -15.56 7.11 99.48 0.71 -14.86 16 14 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 15 N -0.69 -21.21 4.35 -442.53 -1.93 -23.14 16 16 C 0.51 16.43 7.07 87.66 0.62 17.05 16 17 O -0.59 -24.26 15.19 -3.04 -0.05 -24.31 16 18 C -0.11 -2.33 3.54 -10.43 -0.04 -2.36 16 19 H 0.18 1.68 8.14 -2.39 -0.02 1.66 16 20 C -0.13 -3.66 6.42 30.64 0.20 -3.46 16 21 C 0.50 18.22 7.97 87.90 0.70 18.92 16 22 O -0.57 -25.81 15.64 -3.13 -0.05 -25.86 16 23 N -0.53 -16.24 3.16 -628.37 -1.99 -18.23 16 24 C 0.00 -0.14 6.80 37.62 0.26 0.12 16 25 C 0.05 1.25 11.53 85.33 0.98 2.24 16 26 N -0.29 -8.10 12.69 -56.77 -0.72 -8.82 16 27 N -0.46 -12.00 7.40 -56.81 -0.42 -12.42 16 28 H 0.46 8.50 8.96 -213.34 -1.91 6.59 16 29 C 0.02 0.77 11.18 83.50 0.93 1.71 16 30 C 0.12 2.41 6.25 86.83 0.54 2.95 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.99 8.03 -2.39 -0.02 1.97 16 35 H 0.08 2.21 7.86 -2.39 -0.02 2.19 16 36 H 0.02 0.98 5.27 -2.39 -0.01 0.96 16 37 H 0.01 0.30 7.32 -2.38 -0.02 0.29 16 38 H 0.04 1.31 7.84 -2.39 -0.02 1.29 16 39 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.41 10.60 7.18 -92.71 -0.67 9.94 16 41 H 0.15 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.09 3.42 6.22 -2.39 -0.01 3.40 16 43 H 0.22 3.94 8.06 -2.91 -0.02 3.92 16 44 H 0.18 6.08 6.51 -2.91 -0.02 6.06 16 45 H 0.09 2.11 7.01 -2.38 -0.02 2.09 16 46 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -84.41 376.42 1.23 -83.18 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -1.55 Total: 26.06 kcal Atomic # 6 Polarization: 29.37 SS G_CDS: 7.69 Total: 37.05 kcal Atomic # 7 Polarization: -138.72 SS G_CDS: -6.84 Total: -145.57 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.10 Total: -50.17 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -84.41 1.23 -83.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716478260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.571 kcal (2) G-P(sol) polarization free energy of solvation -84.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds