Wall clock time and date at job start Tue Mar 31 2020 18:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46995 * 2 1 4 4 C 1.34255 * 125.75366 * 125.00504 * 3 2 1 5 5 C 1.38042 * 107.41961 * 180.02562 * 4 3 2 6 6 C 1.47427 * 126.41589 * 180.02562 * 5 4 3 7 7 O 1.21605 * 120.00186 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00219 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00310 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47010 * 179.97438 * 9 8 6 11 11 H 1.09006 * 112.74793 * 284.22876 * 10 9 8 12 12 C 1.53516 * 113.47632 * 153.38097 * 10 9 8 13 13 C 1.53504 * 83.57718 * 219.20936 * 12 10 9 14 14 N 1.47475 * 113.47520 * 55.00122 * 10 9 8 15 15 C 1.46896 * 111.00185 * 253.46794 * 14 10 9 16 16 C 1.50699 * 109.47589 * 190.00282 * 15 14 10 17 17 O 1.21297 * 119.99754 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00243 * 179.97438 * 16 15 14 19 19 C 1.37105 * 119.99798 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99762 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99529 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00558 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99945 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47244 * 89.99678 * 23 21 19 25 25 H 1.48499 * 109.47335 * 210.00185 * 23 21 19 26 26 H 1.48500 * 109.47018 * 330.00222 * 23 21 19 27 27 C 1.41295 * 107.17017 * 359.97438 * 5 4 3 28 28 N 1.30451 * 108.01760 * 359.72593 * 27 5 4 29 29 H 1.09001 * 109.47002 * 299.99701 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00138 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46801 * 120.00145 * 2 1 3 33 33 H 1.09001 * 109.46998 * 239.99741 * 2 1 3 34 34 H 1.08005 * 126.29093 * 359.97438 * 4 3 2 35 35 H 0.97006 * 119.99900 * 359.97438 * 8 6 5 36 36 H 1.08999 * 109.47278 * 299.99547 * 9 8 6 37 37 H 1.08999 * 109.46833 * 60.00268 * 9 8 6 38 38 H 1.09002 * 114.17079 * 332.85815 * 12 10 9 39 39 H 1.09005 * 114.17117 * 105.56040 * 12 10 9 40 40 H 1.08999 * 113.47734 * 271.25838 * 13 12 10 41 41 H 1.09005 * 113.53251 * 140.79552 * 13 12 10 42 42 H 1.09007 * 109.46977 * 309.99795 * 15 14 10 43 43 H 1.08994 * 109.47108 * 69.99755 * 15 14 10 44 44 H 0.96999 * 120.00014 * 0.02562 * 18 16 15 45 45 H 0.97001 * 120.00349 * 179.97438 * 22 21 19 46 46 H 1.08000 * 125.98678 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8691 1.9125 0.8924 5 6 3.0705 3.2311 0.5371 6 6 3.9323 4.2034 1.2339 7 8 4.5504 3.8669 2.2255 8 7 4.0350 5.4653 0.7718 9 6 4.8908 6.4317 1.4645 10 6 4.8296 7.7781 0.7403 11 1 5.4088 7.7868 -0.1831 12 6 5.1156 8.9778 1.6545 13 6 3.9966 9.6440 0.8419 14 7 3.4584 8.2963 0.5786 15 6 3.0094 8.1717 -0.8145 16 6 1.7170 8.9256 -0.9952 17 8 1.2188 9.5089 -0.0557 18 7 1.1149 8.9516 -2.2007 19 6 -0.0611 9.6370 -2.3648 20 1 -0.5051 10.1557 -1.5281 21 6 -0.6821 9.6634 -3.6075 22 7 -0.1426 9.0310 -4.6253 23 14 -2.2847 10.5966 -3.8312 24 1 -1.9908 11.9980 -4.2250 25 1 -3.0940 9.9438 -4.8914 26 1 -3.0436 10.5901 -2.5547 27 6 2.2971 3.4740 -0.6201 28 7 1.6816 2.3675 -0.9337 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.3135 1.4022 1.7342 35 1 3.5422 5.7337 -0.0195 36 1 4.5438 6.5545 2.4904 37 1 5.9186 6.0686 1.4694 38 1 4.8668 8.8097 2.7023 39 1 6.0992 9.4247 1.5097 40 1 4.3538 10.1516 -0.0542 41 1 3.3337 10.2665 1.4429 42 1 3.7676 8.5861 -1.4791 43 1 2.8528 7.1198 -1.0530 44 1 1.5132 8.4848 -2.9519 45 1 -0.5763 9.0491 -5.4928 46 1 2.2308 4.4105 -1.1540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716646538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:31 Heat of formation + Delta-G solvation = 44.613828 kcal Electronic energy + Delta-G solvation = -28594.556371 eV Core-core repulsion = 24522.329989 eV Total energy + Delta-G solvation = -4072.226382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49378 -40.40582 -38.85652 -37.72996 -34.79769 -34.39043 -33.90882 -31.40627 -30.76966 -30.68846 -30.03641 -28.01697 -25.82431 -24.38618 -23.75187 -23.41032 -22.24034 -20.81711 -20.12385 -19.57787 -19.27832 -18.07720 -17.92286 -16.37329 -16.18804 -15.96342 -15.85529 -15.56706 -15.01854 -14.83659 -14.62166 -14.50890 -14.22085 -13.98108 -13.78367 -13.64580 -13.44687 -12.95189 -12.78708 -12.66263 -12.44258 -12.33537 -11.89823 -11.80651 -11.64929 -11.50089 -11.36451 -11.10034 -11.05895 -10.80968 -10.47041 -10.39726 -10.22754 -9.78700 -9.74320 -9.51583 -9.05403 -8.76681 -8.69232 -8.27382 -7.97968 -6.43129 -3.83908 1.43126 2.11153 2.14837 3.16847 3.26013 3.28412 3.32083 3.52840 3.85474 3.99180 4.13546 4.23311 4.48717 4.53475 4.57710 4.70958 4.79497 4.80109 4.96819 4.99704 5.08606 5.18773 5.21402 5.27552 5.38508 5.41851 5.45235 5.51221 5.60360 5.66325 5.73288 5.78350 5.83888 5.93859 6.06674 6.21641 6.26312 6.30559 6.48358 6.62404 6.64520 7.19611 7.40330 7.54050 7.64087 8.03969 8.35927 8.59388 9.16669 9.51858 10.03529 10.74473 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007855 B = 0.003436 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3563.763175 B = 8146.536336 C =11266.494382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.127 3.873 3 N -0.363 5.363 4 C 0.125 3.875 5 C -0.293 4.293 6 C 0.597 3.403 7 O -0.559 6.559 8 N -0.717 5.717 9 C 0.144 3.856 10 C 0.003 3.997 11 H 0.083 0.917 12 C -0.135 4.135 13 C 0.013 3.987 14 N -0.436 5.436 15 C 0.008 3.992 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.024 3.976 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C 0.085 3.915 28 N -0.290 5.290 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.186 0.814 35 H 0.400 0.600 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.391 0.609 45 H 0.272 0.728 46 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.265 -14.900 7.173 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.006 3.994 3 N -0.142 5.142 4 C -0.027 4.027 5 C -0.308 4.308 6 C 0.384 3.616 7 O -0.439 6.439 8 N -0.368 5.368 9 C 0.020 3.980 10 C -0.107 4.107 11 H 0.100 0.900 12 C -0.174 4.174 13 C -0.116 4.116 14 N -0.158 5.158 15 C -0.124 4.124 16 C 0.228 3.772 17 O -0.459 6.459 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.542 5.542 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.103 4.103 28 N -0.110 5.110 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.203 0.797 35 H 0.235 0.765 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 8.840 -15.755 7.844 19.695 hybrid contribution 0.252 0.954 -1.303 1.634 sum 9.093 -14.801 6.541 18.562 Atomic orbital electron populations 1.22071 0.93323 1.03061 1.04060 1.21815 0.96535 0.76911 1.04119 1.48683 1.34353 1.10731 1.20433 1.22938 0.91712 0.93614 0.94398 1.20260 1.11667 0.95379 1.03534 1.17199 0.80106 0.81256 0.83002 1.90740 1.47572 1.79114 1.26477 1.45706 1.48801 1.10297 1.32033 1.21292 0.94176 0.85965 0.96565 1.23822 0.92699 0.94798 0.99399 0.89961 1.23194 0.99096 0.95400 0.99681 1.23585 0.95519 0.93003 0.99476 1.68885 1.16985 1.09054 1.20908 1.22540 0.97881 1.00978 0.90987 1.19595 0.86993 0.86367 0.84202 1.90539 1.66594 1.48542 1.40257 1.41860 1.22220 1.46774 1.09168 1.19687 0.98620 1.27927 0.96613 0.87953 1.25241 0.99751 0.97757 0.95063 1.69603 1.40347 1.42776 1.01510 0.85876 0.81201 0.79144 0.78199 1.20433 1.20905 1.19396 1.24142 0.93750 0.97452 0.94969 1.77212 1.23581 0.97130 1.13060 0.91860 0.90737 0.90510 0.88331 0.89314 0.79660 0.76475 0.90772 0.91293 0.88616 0.90531 0.91591 0.88904 0.92470 0.89987 0.77545 0.91862 0.79382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.09 37.16 0.38 -0.75 16 2 C 0.13 0.82 7.21 -4.04 -0.03 0.79 16 3 N -0.36 -3.84 3.65 -60.81 -0.22 -4.06 16 4 C 0.12 1.36 11.25 -16.56 -0.19 1.17 16 5 C -0.29 -3.81 6.13 -105.07 -0.64 -4.45 16 6 C 0.60 8.61 7.81 -12.52 -0.10 8.51 16 7 O -0.56 -9.46 16.90 5.27 0.09 -9.37 16 8 N -0.72 -9.34 5.45 -61.38 -0.33 -9.68 16 9 C 0.14 1.75 5.81 -4.04 -0.02 1.72 16 10 C 0.00 0.04 3.25 -71.43 -0.23 -0.20 16 11 H 0.08 0.85 7.77 -51.93 -0.40 0.45 16 12 C -0.14 -1.46 8.00 -26.20 -0.21 -1.67 16 13 C 0.01 0.19 6.71 -7.55 -0.05 0.14 16 14 N -0.44 -6.80 5.63 -237.94 -1.34 -8.13 16 15 C 0.01 0.14 5.07 -4.98 -0.03 0.11 16 16 C 0.44 10.16 7.62 -10.99 -0.08 10.07 16 17 O -0.58 -15.38 15.34 5.54 0.09 -15.29 16 18 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 22 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 23 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.08 1.10 11.50 -16.98 -0.20 0.90 16 28 N -0.29 -3.88 12.34 30.86 0.38 -3.50 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.36 8.06 -51.93 -0.42 -0.06 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.19 1.52 8.06 -52.48 -0.42 1.09 16 35 H 0.40 4.95 5.17 -40.82 -0.21 4.74 16 36 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 1.02 7.94 -51.93 -0.41 0.61 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.93 7.70 -51.93 -0.40 0.53 16 41 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 42 H 0.06 0.84 7.56 -51.92 -0.39 0.45 16 43 H 0.08 1.19 6.33 -51.93 -0.33 0.86 16 44 H 0.39 9.19 7.90 -40.82 -0.32 8.86 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.19 2.13 7.50 -52.49 -0.39 1.74 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -35.48 388.47 -8.07 -43.55 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.58 Total: 13.62 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -1.64 Total: 8.50 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.85 Total: -62.80 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: 0.17 Total: -24.67 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.48 -8.07 -43.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716646538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.163 kcal (2) G-P(sol) polarization free energy of solvation -35.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds