Wall clock time and date at job start Tue Mar 31 2020 19:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47201 * 2 1 4 4 C 1.35398 * 126.44203 * 265.02322 * 3 2 1 5 5 C 1.35565 * 107.16154 * 179.97438 * 4 3 2 6 6 N 1.33095 * 108.34761 * 0.02562 * 5 4 3 7 7 C 1.31611 * 109.09731 * 0.02562 * 6 5 4 8 8 C 1.47412 * 125.86336 * 180.02562 * 7 6 5 9 9 O 1.21603 * 120.00009 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99935 * 359.97438 * 8 7 6 11 11 C 1.46502 * 120.00041 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47220 * 179.97438 * 11 10 8 13 13 H 1.09000 * 112.74485 * 284.22758 * 12 11 10 14 14 C 1.53513 * 113.47421 * 153.37728 * 12 11 10 15 15 C 1.53515 * 83.57560 * 219.20972 * 14 12 11 16 16 N 1.47484 * 113.47478 * 54.99699 * 12 11 10 17 17 C 1.46898 * 111.00069 * 253.46875 * 16 12 11 18 18 C 1.50703 * 109.46981 * 190.00002 * 17 16 12 19 19 O 1.21292 * 119.99921 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99971 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00303 * 180.02562 * 20 18 17 22 22 H 1.08009 * 119.99565 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00266 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99997 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99986 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47178 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46852 * 119.99675 * 25 23 21 28 28 H 1.48501 * 109.47233 * 239.99998 * 25 23 21 29 29 H 1.09004 * 109.46823 * 59.99514 * 1 2 3 30 30 H 1.08994 * 109.47391 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46624 * 300.00204 * 1 2 3 32 32 H 1.08995 * 109.46897 * 240.00143 * 2 1 3 33 33 H 1.08994 * 109.47254 * 120.00094 * 2 1 3 34 34 H 1.08002 * 126.41902 * 0.24309 * 4 3 2 35 35 H 1.08003 * 125.82383 * 179.97438 * 5 4 3 36 36 H 0.97002 * 120.00201 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.46695 * 299.99458 * 11 10 8 38 38 H 1.08996 * 109.47089 * 59.99992 * 11 10 8 39 39 H 1.08995 * 114.17351 * 332.85791 * 14 12 11 40 40 H 1.09006 * 114.16619 * 105.56695 * 14 12 11 41 41 H 1.09000 * 113.47514 * 271.26447 * 15 14 12 42 42 H 1.08996 * 113.53030 * 140.79927 * 15 14 12 43 43 H 1.08993 * 109.47419 * 310.00322 * 17 16 12 44 44 H 1.09003 * 109.46833 * 70.00365 * 17 16 12 45 45 H 0.97000 * 119.99805 * 359.97438 * 20 18 17 46 46 H 0.97001 * 120.00265 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3756 2.1080 -1.0851 5 6 2.7650 3.3276 -0.6392 6 7 2.6491 3.3456 0.6865 7 6 2.1999 2.1780 1.0954 8 6 1.9357 1.7961 2.4945 9 8 1.5192 0.6831 2.7526 10 7 2.1559 2.6803 3.4875 11 6 1.8939 2.3006 4.8779 12 6 2.2243 3.4769 5.7988 13 1 3.2964 3.6130 5.9406 14 6 1.4287 3.4680 7.1117 15 6 1.3671 4.9849 6.8838 16 7 1.5166 4.7203 5.4406 17 6 2.4321 5.6871 4.8202 18 6 1.7431 7.0214 4.6932 19 8 0.6017 7.1539 5.0817 20 7 2.3950 8.0673 4.1478 21 6 1.7684 9.2812 4.0327 22 1 0.7521 9.3992 4.3787 23 6 2.4404 10.3594 3.4700 24 7 3.6767 10.2157 3.0486 25 14 1.5862 12.0132 3.3126 26 1 0.2086 11.9128 3.8580 27 1 2.3460 13.0372 4.0738 28 1 1.5252 12.4046 1.8813 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.3504 1.7793 -2.1136 35 1 3.1110 4.1448 -1.2547 36 1 2.4885 3.5680 3.2816 37 1 0.8427 2.0351 4.9901 38 1 2.5151 1.4455 5.1443 39 1 0.4630 2.9671 7.0449 40 1 2.0107 3.1711 7.9842 41 1 2.2103 5.5235 7.3161 42 1 0.4056 5.4258 7.1471 43 1 3.3216 5.7952 5.4408 44 1 2.7203 5.3314 3.8310 45 1 3.3079 7.9614 3.8374 46 1 4.1460 10.9684 2.6561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716649744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:45 Heat of formation + Delta-G solvation = 33.796360 kcal Electronic energy + Delta-G solvation = -29024.902756 eV Core-core repulsion = 24952.207293 eV Total energy + Delta-G solvation = -4072.695463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.38659 -40.43499 -39.06296 -37.68223 -35.46011 -34.37117 -33.85465 -31.35281 -30.84899 -30.50724 -29.95132 -28.10252 -25.78073 -24.46900 -23.70515 -23.58430 -22.32804 -21.40648 -20.19924 -19.54056 -19.22132 -17.99513 -17.86262 -16.51732 -16.25255 -16.14268 -15.84801 -15.55506 -14.92319 -14.82805 -14.78546 -14.46060 -14.11899 -13.97603 -13.84281 -13.74925 -13.60992 -13.42157 -12.88433 -12.71033 -12.33493 -12.30692 -11.93216 -11.63664 -11.62409 -11.46939 -11.34676 -11.06132 -10.79294 -10.56548 -10.31802 -10.29196 -10.18485 -10.13779 -9.93250 -9.47346 -9.16884 -8.73836 -8.62087 -8.21948 -7.92001 -6.37671 -3.78146 1.27678 2.28256 2.53861 3.17884 3.19268 3.29318 3.36723 3.39791 3.91807 3.99814 4.21840 4.31197 4.38967 4.47927 4.62569 4.71715 4.77432 4.96942 5.00082 5.01891 5.16585 5.26094 5.27120 5.36041 5.38027 5.42243 5.49774 5.50588 5.69319 5.74824 5.80035 5.83386 5.87426 6.05681 6.07239 6.22412 6.30089 6.36869 6.51200 6.60781 6.77990 7.21609 7.35130 7.59134 7.78165 8.09088 8.09840 8.65513 9.22104 9.58402 10.10121 10.80123 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.003219 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.222969 B = 8695.018711 C =10822.087795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 N -0.415 5.415 4 C -0.033 4.033 5 C -0.023 4.023 6 N -0.439 5.439 7 C 0.138 3.862 8 C 0.608 3.392 9 O -0.548 6.548 10 N -0.694 5.694 11 C 0.143 3.857 12 C 0.002 3.998 13 H 0.084 0.916 14 C -0.135 4.135 15 C 0.013 3.987 16 N -0.436 5.436 17 C 0.007 3.993 18 C 0.446 3.554 19 O -0.578 6.578 20 N -0.563 5.563 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.182 0.818 35 H 0.179 0.821 36 H 0.414 0.586 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.325 -21.044 -3.698 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.096 5.096 4 C -0.171 4.171 5 C -0.177 4.177 6 N -0.161 5.161 7 C -0.121 4.121 8 C 0.392 3.608 9 O -0.426 6.426 10 N -0.346 5.346 11 C 0.019 3.981 12 C -0.108 4.108 13 H 0.102 0.898 14 C -0.173 4.173 15 C -0.116 4.116 16 N -0.158 5.158 17 C -0.125 4.125 18 C 0.231 3.769 19 O -0.462 6.462 20 N -0.200 5.200 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.755 3.245 26 H -0.193 1.193 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.199 0.801 35 H 0.196 0.804 36 H 0.252 0.748 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.085 -21.109 -3.199 21.350 hybrid contribution 1.098 0.855 -0.872 1.642 sum 1.012 -20.254 -4.071 20.684 Atomic orbital electron populations 1.22072 0.93560 1.03290 1.03216 1.22096 0.96363 0.78894 1.05131 1.45263 1.45379 1.12847 1.06138 1.22914 1.07014 0.94141 0.92999 1.22489 1.06794 0.97397 0.90985 1.70259 1.14808 1.18139 1.12860 1.22644 1.10639 0.88596 0.90262 1.16424 0.77840 0.84457 0.82078 1.90767 1.47281 1.20821 1.83722 1.45641 1.65636 1.17283 1.06035 1.21420 1.02024 0.96036 0.78631 1.23822 0.98471 0.93060 0.95460 0.89804 1.23195 1.00793 0.97613 0.95672 1.23586 1.03488 0.95293 0.89219 1.68880 1.32850 1.01348 1.12750 1.22561 0.94811 0.94360 1.00810 1.19568 0.87785 0.84892 0.84633 1.90526 1.18218 1.84024 1.53392 1.41854 1.15447 1.09022 1.53672 1.19732 0.99654 0.85786 1.37486 0.87942 1.25246 0.95774 0.99939 0.96969 1.69621 1.10587 1.32623 1.41376 0.85820 0.79423 0.81329 0.77889 1.19253 1.20820 1.20740 0.92242 0.90419 0.91215 0.89125 0.87307 0.80095 0.80393 0.74831 0.90408 0.90920 0.88625 0.90467 0.91539 0.88868 0.92521 0.89402 0.77482 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 10.24 37.16 0.38 -1.00 16 2 C 0.10 0.84 6.18 -4.04 -0.02 0.81 16 3 N -0.42 -4.77 2.76 -114.59 -0.32 -5.09 16 4 C -0.03 -0.32 11.53 -16.93 -0.20 -0.52 16 5 C -0.02 -0.29 11.85 -17.96 -0.21 -0.50 16 6 N -0.44 -6.78 10.89 -11.26 -0.12 -6.90 16 7 C 0.14 2.00 7.78 -154.53 -1.20 0.79 16 8 C 0.61 9.01 7.81 -12.53 -0.10 8.91 16 9 O -0.55 -8.42 14.52 5.27 0.08 -8.35 16 10 N -0.69 -9.75 5.46 -61.39 -0.34 -10.09 16 11 C 0.14 1.73 5.81 -4.04 -0.02 1.70 16 12 C 0.00 0.03 3.26 -71.43 -0.23 -0.21 16 13 H 0.08 0.91 7.77 -51.93 -0.40 0.50 16 14 C -0.13 -1.46 8.00 -26.20 -0.21 -1.67 16 15 C 0.01 0.19 6.71 -7.54 -0.05 0.14 16 16 N -0.44 -7.11 5.63 -237.92 -1.34 -8.45 16 17 C 0.01 0.12 5.07 -4.98 -0.03 0.09 16 18 C 0.45 10.70 7.62 -10.98 -0.08 10.61 16 19 O -0.58 -15.88 15.33 5.55 0.09 -15.80 16 20 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 21 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 22 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 25 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.78 7.86 -51.93 -0.41 0.38 16 32 H 0.09 0.51 8.13 -51.93 -0.42 0.08 16 33 H 0.11 1.06 6.63 -51.93 -0.34 0.72 16 34 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.41 6.16 5.90 -40.82 -0.24 5.92 16 37 H 0.08 1.00 7.88 -51.93 -0.41 0.59 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 1.00 7.94 -51.93 -0.41 0.59 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.95 7.70 -51.93 -0.40 0.55 16 42 H 0.09 1.56 8.13 -51.93 -0.42 1.14 16 43 H 0.06 0.90 7.56 -51.93 -0.39 0.50 16 44 H 0.09 1.50 6.33 -51.93 -0.33 1.17 16 45 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -34.86 384.73 -9.28 -44.14 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -6.55 Total: 15.87 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -2.22 Total: 11.15 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.45 Total: -69.10 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.16 Total: -24.14 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.86 -9.28 -44.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716649744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.935 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds