Wall clock time and date at job start Tue Mar 31 2020 19:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47201 * 2 1 4 4 C 1.35398 * 126.44203 * 265.02322 * 3 2 1 5 5 C 1.35565 * 107.16154 * 179.97438 * 4 3 2 6 6 N 1.33095 * 108.34761 * 0.02562 * 5 4 3 7 7 C 1.31611 * 109.09731 * 0.02562 * 6 5 4 8 8 C 1.47412 * 125.86336 * 180.02562 * 7 6 5 9 9 O 1.21603 * 120.00009 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99935 * 359.97438 * 8 7 6 11 11 C 1.46502 * 120.00041 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47220 * 179.97438 * 11 10 8 13 13 H 1.09000 * 112.74485 * 284.22758 * 12 11 10 14 14 C 1.53513 * 113.47421 * 153.37728 * 12 11 10 15 15 C 1.53515 * 83.57560 * 219.20972 * 14 12 11 16 16 N 1.47484 * 113.47478 * 54.99699 * 12 11 10 17 17 C 1.46898 * 111.00069 * 253.46875 * 16 12 11 18 18 C 1.50703 * 109.46981 * 190.00002 * 17 16 12 19 19 O 1.21292 * 119.99921 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99971 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00303 * 180.02562 * 20 18 17 22 22 H 1.08009 * 119.99565 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00266 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99997 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99986 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47178 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46852 * 119.99675 * 25 23 21 28 28 H 1.48501 * 109.47233 * 239.99998 * 25 23 21 29 29 H 1.09004 * 109.46823 * 59.99514 * 1 2 3 30 30 H 1.08994 * 109.47391 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46624 * 300.00204 * 1 2 3 32 32 H 1.08995 * 109.46897 * 240.00143 * 2 1 3 33 33 H 1.08994 * 109.47254 * 120.00094 * 2 1 3 34 34 H 1.08002 * 126.41902 * 0.24309 * 4 3 2 35 35 H 1.08003 * 125.82383 * 179.97438 * 5 4 3 36 36 H 0.97002 * 120.00201 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.46695 * 299.99458 * 11 10 8 38 38 H 1.08996 * 109.47089 * 59.99992 * 11 10 8 39 39 H 1.08995 * 114.17351 * 332.85791 * 14 12 11 40 40 H 1.09006 * 114.16619 * 105.56695 * 14 12 11 41 41 H 1.09000 * 113.47514 * 271.26447 * 15 14 12 42 42 H 1.08996 * 113.53030 * 140.79927 * 15 14 12 43 43 H 1.08993 * 109.47419 * 310.00322 * 17 16 12 44 44 H 1.09003 * 109.46833 * 70.00365 * 17 16 12 45 45 H 0.97000 * 119.99805 * 359.97438 * 20 18 17 46 46 H 0.97001 * 120.00265 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3756 2.1080 -1.0851 5 6 2.7650 3.3276 -0.6392 6 7 2.6491 3.3456 0.6865 7 6 2.1999 2.1780 1.0954 8 6 1.9357 1.7961 2.4945 9 8 1.5192 0.6831 2.7526 10 7 2.1559 2.6803 3.4875 11 6 1.8939 2.3006 4.8779 12 6 2.2243 3.4769 5.7988 13 1 3.2964 3.6130 5.9406 14 6 1.4287 3.4680 7.1117 15 6 1.3671 4.9849 6.8838 16 7 1.5166 4.7203 5.4406 17 6 2.4321 5.6871 4.8202 18 6 1.7431 7.0214 4.6932 19 8 0.6017 7.1539 5.0817 20 7 2.3950 8.0673 4.1478 21 6 1.7684 9.2812 4.0327 22 1 0.7521 9.3992 4.3787 23 6 2.4404 10.3594 3.4700 24 7 3.6767 10.2157 3.0486 25 14 1.5862 12.0132 3.3126 26 1 0.2086 11.9128 3.8580 27 1 2.3460 13.0372 4.0738 28 1 1.5252 12.4046 1.8813 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.3504 1.7793 -2.1136 35 1 3.1110 4.1448 -1.2547 36 1 2.4885 3.5680 3.2816 37 1 0.8427 2.0351 4.9901 38 1 2.5151 1.4455 5.1443 39 1 0.4630 2.9671 7.0449 40 1 2.0107 3.1711 7.9842 41 1 2.2103 5.5235 7.3161 42 1 0.4056 5.4258 7.1471 43 1 3.3216 5.7952 5.4408 44 1 2.7203 5.3314 3.8310 45 1 3.3079 7.9614 3.8374 46 1 4.1460 10.9684 2.6561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716649744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:44 Heat of formation + Delta-G solvation = 6.314104 kcal Electronic energy + Delta-G solvation = -29026.094476 eV Core-core repulsion = 24952.207293 eV Total energy + Delta-G solvation = -4073.887183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.29108 -41.62398 -40.22754 -39.50876 -36.34705 -35.95026 -35.34460 -33.33311 -32.15470 -31.49334 -30.86103 -29.11912 -27.54856 -25.38603 -25.34264 -24.47530 -23.32990 -22.27288 -21.25103 -21.08804 -20.53620 -19.91407 -18.91200 -17.80618 -17.47453 -17.28571 -17.02732 -16.75709 -16.49414 -16.23715 -15.82054 -15.57751 -15.55439 -15.42517 -14.96752 -14.81707 -14.72056 -14.45405 -14.18325 -13.85976 -13.60761 -13.54512 -13.11888 -13.01731 -12.91345 -12.75911 -12.43849 -12.36888 -12.32326 -12.12987 -11.92606 -11.70040 -11.50359 -11.32050 -11.12975 -10.85077 -10.34942 -10.22702 -10.01214 -9.77017 -9.51644 -8.46374 -5.95106 0.31580 1.35753 1.40683 1.41939 1.55098 1.61200 2.03564 2.23614 2.29224 2.36987 2.82353 3.19336 3.22203 3.35840 3.56607 3.73761 3.77594 3.83814 4.04155 4.05046 4.18399 4.25661 4.34217 4.34936 4.39600 4.41889 4.45995 4.51531 4.63414 4.71232 4.77971 4.83538 4.88276 5.01040 5.12515 5.19210 5.23092 5.29055 5.40404 5.43988 5.65280 5.92021 5.93990 6.09235 6.27165 6.59935 6.79747 7.04189 7.12771 7.55470 8.11396 8.71299 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.003219 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.222969 B = 8695.018711 C =10822.087795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.093 3.907 3 N -0.413 5.413 4 C -0.003 4.003 5 C -0.055 4.055 6 N -0.475 5.475 7 C 0.101 3.899 8 C 0.603 3.397 9 O -0.561 6.561 10 N -0.697 5.697 11 C 0.143 3.857 12 C 0.012 3.988 13 H 0.106 0.894 14 C -0.109 4.109 15 C 0.003 3.997 16 N -0.467 5.467 17 C 0.022 3.978 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.275 1.275 27 H -0.269 1.269 28 H -0.271 1.271 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.033 0.967 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.230 0.770 35 H 0.193 0.807 36 H 0.408 0.592 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.395 0.605 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -22.565 -4.713 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.027 4.027 3 N -0.093 5.093 4 C -0.143 4.143 5 C -0.208 4.208 6 N -0.197 5.197 7 C -0.157 4.157 8 C 0.388 3.612 9 O -0.441 6.441 10 N -0.348 5.348 11 C 0.020 3.980 12 C -0.097 4.097 13 H 0.124 0.876 14 C -0.147 4.147 15 C -0.126 4.126 16 N -0.190 5.190 17 C -0.109 4.109 18 C 0.230 3.770 19 O -0.504 6.504 20 N -0.210 5.210 21 C -0.462 4.462 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.200 1.200 27 H -0.194 1.194 28 H -0.196 1.196 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.052 0.948 32 H 0.150 0.850 33 H 0.113 0.887 34 H 0.246 0.754 35 H 0.210 0.790 36 H 0.245 0.755 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.131 0.869 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.229 0.771 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.905 -22.662 -4.193 23.064 hybrid contribution 0.772 1.282 -0.622 1.621 sum 1.677 -21.380 -4.815 21.979 Atomic orbital electron populations 1.22035 0.93509 1.04316 1.01726 1.22331 0.96333 0.77598 1.06474 1.45537 1.44471 1.13621 1.05718 1.23632 1.03512 0.92772 0.94335 1.22962 1.08166 0.99297 0.90338 1.70164 1.15674 1.19166 1.14730 1.22562 1.12918 0.89366 0.90825 1.16600 0.77645 0.84398 0.82607 1.90740 1.48063 1.21204 1.84065 1.45726 1.65464 1.16891 1.06717 1.21522 1.01894 0.96731 0.77853 1.23892 0.99521 0.90650 0.95676 0.87634 1.23132 1.01299 0.94003 0.96268 1.23634 1.02094 0.98255 0.88647 1.68871 1.33878 1.02610 1.13690 1.22399 0.95165 0.91179 1.02187 1.20637 0.87393 0.86449 0.82566 1.90492 1.20210 1.85109 1.54601 1.41924 1.15614 1.09046 1.54375 1.19664 0.99250 0.87690 1.39600 0.90562 1.26026 0.96396 1.02851 0.95906 1.69679 1.11305 1.33869 1.41105 0.84889 0.78039 0.77158 0.78342 1.19956 1.19378 1.19577 0.91519 0.88169 0.94770 0.85018 0.88697 0.75355 0.78982 0.75475 0.91419 0.88850 0.88350 0.86933 0.91099 0.91907 0.89933 0.88606 0.77084 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 10.24 71.98 0.74 -1.71 16 2 C 0.09 1.42 6.18 86.38 0.53 1.95 16 3 N -0.41 -8.91 2.76 -516.45 -1.42 -10.33 16 4 C 0.00 -0.06 11.53 83.52 0.96 0.90 16 5 C -0.05 -1.30 11.85 83.88 0.99 -0.31 16 6 N -0.48 -14.88 10.89 -189.53 -2.06 -16.94 16 7 C 0.10 2.95 7.78 136.28 1.06 4.01 16 8 C 0.60 18.16 7.81 86.66 0.68 18.84 16 9 O -0.56 -17.45 14.52 -4.04 -0.06 -17.50 16 10 N -0.70 -19.70 5.46 -466.38 -2.55 -22.24 16 11 C 0.14 3.32 5.81 86.38 0.50 3.83 16 12 C 0.01 0.27 3.26 42.19 0.14 0.41 16 13 H 0.11 1.96 7.77 -2.39 -0.02 1.94 16 14 C -0.11 -2.13 8.00 30.94 0.25 -1.88 16 15 C 0.00 0.08 6.71 83.58 0.56 0.64 16 16 N -0.47 -15.22 5.63 -906.63 -5.10 -20.32 16 17 C 0.02 0.81 5.07 85.56 0.43 1.24 16 18 C 0.44 21.93 7.62 87.66 0.67 22.60 16 19 O -0.62 -35.55 15.33 -3.07 -0.05 -35.59 16 20 N -0.57 -30.43 5.29 -306.98 -1.62 -32.05 16 21 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 24 N -0.92 -50.51 13.05 21.66 0.28 -50.23 16 25 Si 0.99 43.92 29.55 68.60 2.03 45.94 16 26 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.03 0.77 7.86 -2.39 -0.02 0.75 16 32 H 0.13 0.94 8.13 -2.39 -0.02 0.92 16 33 H 0.09 1.76 6.63 -2.39 -0.02 1.74 16 34 H 0.23 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.19 3.71 8.06 -2.91 -0.02 3.69 16 36 H 0.41 12.37 5.90 -92.71 -0.55 11.82 16 37 H 0.07 1.71 7.88 -2.39 -0.02 1.69 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.10 1.90 7.94 -2.39 -0.02 1.88 16 40 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.07 1.99 7.70 -2.39 -0.02 1.97 16 42 H 0.06 2.20 8.13 -2.39 -0.02 2.18 16 43 H 0.08 2.52 7.56 -2.39 -0.02 2.50 16 44 H 0.10 3.29 6.33 -2.39 -0.02 3.28 16 45 H 0.40 20.05 7.90 -92.71 -0.73 19.32 16 46 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -79.92 384.73 -2.02 -81.94 By element: Atomic # 1 Polarization: 45.89 SS G_CDS: -0.26 Total: 45.64 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 8.80 Total: 31.70 kcal Atomic # 7 Polarization: -139.64 SS G_CDS: -12.48 Total: -152.12 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.11 Total: -53.10 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -79.92 -2.02 -81.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716649744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.249 kcal (2) G-P(sol) polarization free energy of solvation -79.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds