Wall clock time and date at job start Tue Mar 31 2020 18:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46910 * 2 1 4 4 C 1.52995 * 109.47475 * 120.00022 * 2 1 3 5 5 N 1.46502 * 109.47229 * 175.00025 * 4 2 1 6 6 C 1.34779 * 119.99951 * 180.02562 * 5 4 2 7 7 O 1.21627 * 119.99889 * 359.97438 * 6 5 4 8 8 C 1.47323 * 119.99939 * 180.02562 * 6 5 4 9 9 C 1.36297 * 126.22723 * 180.02562 * 8 6 5 10 10 N 1.35752 * 106.91853 * 179.90465 * 9 8 6 11 11 C 1.35686 * 107.69288 * 0.17648 * 10 9 8 12 12 N 1.30599 * 108.91063 * 359.76482 * 11 10 9 13 13 C 1.51599 * 109.81640 * 179.77955 * 11 10 9 14 14 C 1.54498 * 104.28182 * 343.35499 * 13 11 10 15 15 C 1.47077 * 141.30415 * 180.23971 * 10 9 8 16 16 N 1.46901 * 109.46912 * 240.00230 * 2 1 3 17 17 C 1.46899 * 111.00001 * 84.99753 * 16 2 1 18 18 C 1.50703 * 109.47023 * 179.97438 * 17 16 2 19 19 O 1.21291 * 120.00119 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00313 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00531 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99680 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00175 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00182 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99872 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47382 * 60.00249 * 25 23 21 27 27 H 1.48497 * 109.47163 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47072 * 300.00160 * 25 23 21 29 29 H 1.09007 * 109.47317 * 299.99697 * 1 2 3 30 30 H 1.08998 * 109.47665 * 59.99865 * 1 2 3 31 31 H 1.09001 * 109.46910 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47009 * 55.00111 * 4 2 1 33 33 H 1.09002 * 109.47308 * 295.00030 * 4 2 1 34 34 H 0.96994 * 120.00160 * 359.97438 * 5 4 2 35 35 H 1.08002 * 126.54102 * 359.88561 * 9 8 6 36 36 H 1.08999 * 110.46790 * 224.65557 * 13 11 10 37 37 H 1.08997 * 110.57762 * 102.11185 * 13 11 10 38 38 H 1.09002 * 110.94401 * 267.21567 * 14 13 11 39 39 H 1.09003 * 110.94668 * 143.51619 * 14 13 11 40 40 H 1.08997 * 110.22675 * 78.09552 * 15 10 9 41 41 H 1.08992 * 110.22293 * 316.14301 * 15 10 9 42 42 H 1.00907 * 110.99942 * 208.95400 * 16 2 1 43 43 H 1.08991 * 109.47290 * 299.99734 * 17 16 2 44 44 H 1.09003 * 109.47086 * 60.00472 * 17 16 2 45 45 H 0.97003 * 119.99540 * 0.02562 * 20 18 17 46 46 H 0.97002 * 120.00152 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1731 -1.4291 2.1906 7 8 3.5683 -1.8854 3.1420 8 6 5.6414 -1.5343 2.1318 9 6 6.4455 -2.1147 3.0668 10 7 7.7216 -1.9946 2.6198 11 6 7.6822 -1.3444 1.4295 12 7 6.4388 -1.0719 1.1371 13 6 9.0882 -1.1789 0.8875 14 6 9.9999 -1.4358 2.1080 15 6 9.1045 -2.3304 2.9914 16 7 2.0196 -0.6925 -1.1995 17 6 2.0823 0.2226 -2.3469 18 6 2.5883 -0.5215 -3.5558 19 8 2.8686 -1.6984 -3.4701 20 7 2.7284 0.1206 -4.7325 21 6 3.1882 -0.5564 -5.8324 22 1 3.4378 -1.6044 -5.7560 23 6 3.3332 0.1057 -7.0453 24 7 3.0299 1.3810 -7.1382 25 14 3.9604 -0.8167 -8.5437 26 1 3.0393 -1.9390 -8.8556 27 1 4.0244 0.1085 -9.7035 28 1 5.3166 -1.3526 -8.2632 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 3.9824 -0.4627 0.4315 35 1 6.1279 -2.5810 3.9878 36 1 9.2341 -0.1672 0.5089 37 1 9.2853 -1.9103 0.1037 38 1 10.2417 -0.5028 2.6171 39 1 10.9070 -1.9632 1.8127 40 1 9.3046 -3.3823 2.7875 41 1 9.2753 -2.1109 4.0452 42 1 2.9173 -1.1205 -1.0288 43 1 1.0870 0.6163 -2.5525 44 1 2.7588 1.0462 -2.1183 45 1 2.5039 1.0618 -4.8011 46 1 3.1307 1.8431 -7.9850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731592285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:43 Heat of formation + Delta-G solvation = -0.150850 kcal Electronic energy + Delta-G solvation = -28132.413380 eV Core-core repulsion = 24058.245856 eV Total energy + Delta-G solvation = -4074.167524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.76888 -39.56206 -38.30977 -36.92909 -36.47666 -34.03281 -33.61050 -32.33786 -31.24795 -30.77251 -29.32131 -27.62606 -26.73224 -26.06531 -23.98006 -23.28184 -21.90973 -20.56474 -20.28963 -20.10777 -19.21923 -17.90858 -17.67522 -16.99085 -16.48921 -16.14979 -15.95293 -15.46830 -15.18618 -14.86994 -14.43837 -14.30429 -14.11695 -13.99457 -13.81286 -13.71652 -13.35715 -13.31666 -12.90346 -12.68618 -12.47070 -12.40753 -12.15467 -11.81405 -11.64641 -11.59853 -11.56922 -11.34146 -11.01562 -10.76379 -10.42960 -10.40660 -10.16507 -10.07523 -10.00748 -9.44988 -9.09144 -8.63868 -8.39154 -8.03111 -7.90529 -6.36757 -3.77242 1.41575 2.17961 2.23317 3.23019 3.23716 3.28589 3.33436 3.40315 3.49715 3.92677 3.97116 4.09966 4.13158 4.20009 4.36009 4.61463 4.74861 4.76979 4.87404 4.91469 5.08490 5.12508 5.20180 5.28154 5.32056 5.36793 5.39652 5.41751 5.63448 5.78639 5.82893 5.84286 5.87660 6.04521 6.07973 6.28342 6.32904 6.36747 6.47369 6.58028 7.26219 7.42654 7.59841 7.68636 7.72348 8.11509 8.24117 8.67120 9.23124 9.59960 10.12033 10.81093 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009044 B = 0.002790 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.155673 B =10034.603186 C =12672.885375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.119 3.881 5 N -0.716 5.716 6 C 0.610 3.390 7 O -0.548 6.548 8 C -0.055 4.055 9 C 0.053 3.947 10 N -0.481 5.481 11 C 0.192 3.808 12 N -0.446 5.446 13 C -0.043 4.043 14 C -0.129 4.129 15 C 0.101 3.899 16 N -0.665 5.665 17 C 0.049 3.951 18 C 0.442 3.558 19 O -0.581 6.581 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.408 0.592 35 H 0.186 0.814 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.350 0.650 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.817 -0.728 21.673 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.005 4.005 5 N -0.368 5.368 6 C 0.396 3.604 7 O -0.426 6.426 8 C -0.185 4.185 9 C -0.085 4.085 10 N -0.164 5.164 11 C -0.073 4.073 12 N -0.165 5.165 13 C -0.082 4.082 14 C -0.167 4.167 15 C -0.020 4.020 16 N -0.300 5.300 17 C -0.083 4.083 18 C 0.227 3.773 19 O -0.465 6.465 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.245 0.755 35 H 0.203 0.797 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.171 0.829 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.708 -1.667 21.548 24.119 hybrid contribution 1.351 0.484 -0.308 1.468 sum 12.059 -1.184 21.240 24.453 Atomic orbital electron populations 1.21733 0.93408 1.02925 1.01485 1.21806 0.97033 0.96005 0.89091 0.93312 1.21631 0.79097 1.02070 0.97689 1.45819 1.07885 1.59258 1.23822 1.16748 0.84201 0.77320 0.82113 1.90785 1.68886 1.49167 1.33731 1.20489 0.94065 1.09232 0.94671 1.22177 0.80934 1.04028 1.01373 1.46376 1.06519 1.43526 1.19970 1.24479 0.95386 0.99878 0.87510 1.70234 0.99059 1.21424 1.25805 1.20705 0.84324 1.05361 0.97785 1.22742 0.98088 1.00717 0.95185 1.22481 0.76880 1.01212 1.01381 1.60153 1.35061 1.32114 1.02674 1.21749 1.01386 0.93881 0.91310 1.19806 0.84846 0.88204 0.84428 1.90532 1.55118 1.16121 1.84717 1.41844 1.57920 1.12422 1.07935 1.19653 1.39859 0.96402 0.86828 0.88018 1.25243 0.97750 0.95772 0.99184 1.69607 1.48842 1.08833 1.27190 0.85927 0.79420 0.78832 0.80090 1.19917 1.21020 1.19945 0.92518 0.92009 0.91522 0.90218 0.90743 0.75543 0.79701 0.87982 0.88065 0.89278 0.87746 0.88790 0.88842 0.82863 0.89448 0.93791 0.77480 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.41 37.16 0.35 -1.27 16 2 C 0.07 0.94 2.81 -67.72 -0.19 0.75 16 3 H 0.05 0.61 7.80 -51.93 -0.40 0.20 16 4 C 0.12 1.56 5.31 -4.04 -0.02 1.54 16 5 N -0.72 -10.28 4.99 -61.41 -0.31 -10.59 16 6 C 0.61 9.47 7.81 -12.56 -0.10 9.37 16 7 O -0.55 -9.47 16.88 5.25 0.09 -9.38 16 8 C -0.06 -0.79 6.97 -83.20 -0.58 -1.37 16 9 C 0.05 0.61 11.75 -16.52 -0.19 0.41 16 10 N -0.48 -4.52 3.55 -112.01 -0.40 -4.91 16 11 C 0.19 2.16 8.58 -154.30 -1.32 0.84 16 12 N -0.45 -6.54 11.01 -6.96 -0.08 -6.62 16 13 C -0.04 -0.28 6.85 -26.65 -0.18 -0.46 16 14 C -0.13 -0.39 7.16 -25.23 -0.18 -0.57 16 15 C 0.10 0.45 7.78 -3.02 -0.02 0.42 16 16 N -0.66 -11.36 5.93 -108.00 -0.64 -12.00 16 17 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 18 C 0.44 10.75 7.82 -10.98 -0.09 10.67 16 19 O -0.58 -16.32 15.78 5.55 0.09 -16.23 16 20 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 21 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 25 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.41 5.97 7.08 -40.82 -0.29 5.68 16 35 H 0.19 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.35 6.40 6.41 -39.29 -0.25 6.15 16 43 H 0.09 1.47 7.43 -51.93 -0.39 1.08 16 44 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 45 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 46 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 387.81 15.07 5.84 5.84 Total: -1.00 -36.73 387.81 -9.18 -45.91 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -6.62 Total: 17.39 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: -2.80 Total: 13.09 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -0.75 Total: -72.95 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: 0.18 Total: -25.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.73 -9.18 -45.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731592285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.757 kcal (2) G-P(sol) polarization free energy of solvation -36.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds