Wall clock time and date at job start Tue Mar 31 2020 18:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46910 * 2 1 4 4 C 1.52995 * 109.47475 * 120.00022 * 2 1 3 5 5 N 1.46502 * 109.47229 * 175.00025 * 4 2 1 6 6 C 1.34779 * 119.99951 * 180.02562 * 5 4 2 7 7 O 1.21627 * 119.99889 * 359.97438 * 6 5 4 8 8 C 1.47323 * 119.99939 * 180.02562 * 6 5 4 9 9 C 1.36297 * 126.22723 * 180.02562 * 8 6 5 10 10 N 1.35752 * 106.91853 * 179.90465 * 9 8 6 11 11 C 1.35686 * 107.69288 * 0.17648 * 10 9 8 12 12 N 1.30599 * 108.91063 * 359.76482 * 11 10 9 13 13 C 1.51599 * 109.81640 * 179.77955 * 11 10 9 14 14 C 1.54498 * 104.28182 * 343.35499 * 13 11 10 15 15 C 1.47077 * 141.30415 * 180.23971 * 10 9 8 16 16 N 1.46901 * 109.46912 * 240.00230 * 2 1 3 17 17 C 1.46899 * 111.00001 * 84.99753 * 16 2 1 18 18 C 1.50703 * 109.47023 * 179.97438 * 17 16 2 19 19 O 1.21291 * 120.00119 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00313 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00531 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99680 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00175 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00182 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99872 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47382 * 60.00249 * 25 23 21 27 27 H 1.48497 * 109.47163 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47072 * 300.00160 * 25 23 21 29 29 H 1.09007 * 109.47317 * 299.99697 * 1 2 3 30 30 H 1.08998 * 109.47665 * 59.99865 * 1 2 3 31 31 H 1.09001 * 109.46910 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47009 * 55.00111 * 4 2 1 33 33 H 1.09002 * 109.47308 * 295.00030 * 4 2 1 34 34 H 0.96994 * 120.00160 * 359.97438 * 5 4 2 35 35 H 1.08002 * 126.54102 * 359.88561 * 9 8 6 36 36 H 1.08999 * 110.46790 * 224.65557 * 13 11 10 37 37 H 1.08997 * 110.57762 * 102.11185 * 13 11 10 38 38 H 1.09002 * 110.94401 * 267.21567 * 14 13 11 39 39 H 1.09003 * 110.94668 * 143.51619 * 14 13 11 40 40 H 1.08997 * 110.22675 * 78.09552 * 15 10 9 41 41 H 1.08992 * 110.22293 * 316.14301 * 15 10 9 42 42 H 1.00907 * 110.99942 * 208.95400 * 16 2 1 43 43 H 1.08991 * 109.47290 * 299.99734 * 17 16 2 44 44 H 1.09003 * 109.47086 * 60.00472 * 17 16 2 45 45 H 0.97003 * 119.99540 * 0.02562 * 20 18 17 46 46 H 0.97002 * 120.00152 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1731 -1.4291 2.1906 7 8 3.5683 -1.8854 3.1420 8 6 5.6414 -1.5343 2.1318 9 6 6.4455 -2.1147 3.0668 10 7 7.7216 -1.9946 2.6198 11 6 7.6822 -1.3444 1.4295 12 7 6.4388 -1.0719 1.1371 13 6 9.0882 -1.1789 0.8875 14 6 9.9999 -1.4358 2.1080 15 6 9.1045 -2.3304 2.9914 16 7 2.0196 -0.6925 -1.1995 17 6 2.0823 0.2226 -2.3469 18 6 2.5883 -0.5215 -3.5558 19 8 2.8686 -1.6984 -3.4701 20 7 2.7284 0.1206 -4.7325 21 6 3.1882 -0.5564 -5.8324 22 1 3.4378 -1.6044 -5.7560 23 6 3.3332 0.1057 -7.0453 24 7 3.0299 1.3810 -7.1382 25 14 3.9604 -0.8167 -8.5437 26 1 3.0393 -1.9390 -8.8556 27 1 4.0244 0.1085 -9.7035 28 1 5.3166 -1.3526 -8.2632 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 3.9824 -0.4627 0.4315 35 1 6.1279 -2.5810 3.9878 36 1 9.2341 -0.1672 0.5089 37 1 9.2853 -1.9103 0.1037 38 1 10.2417 -0.5028 2.6171 39 1 10.9070 -1.9632 1.8127 40 1 9.3046 -3.3823 2.7875 41 1 9.2753 -2.1109 4.0452 42 1 2.9173 -1.1205 -1.0288 43 1 1.0870 0.6163 -2.5525 44 1 2.7588 1.0462 -2.1183 45 1 2.5039 1.0618 -4.8011 46 1 3.1307 1.8431 -7.9850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731592285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:42 Heat of formation + Delta-G solvation = -28.764012 kcal Electronic energy + Delta-G solvation = -28133.654140 eV Core-core repulsion = 24058.245856 eV Total energy + Delta-G solvation = -4075.408284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.55632 -40.73605 -40.11668 -38.21193 -37.15424 -35.98050 -34.97239 -33.28605 -33.06809 -32.08907 -30.11581 -28.21654 -28.14774 -27.37253 -25.73645 -24.17608 -22.44981 -21.68040 -21.24178 -21.08089 -21.02854 -19.91955 -18.70756 -17.86160 -17.57686 -17.17086 -17.08025 -16.87723 -16.66500 -16.35352 -15.96633 -15.56094 -15.40156 -15.04813 -14.89380 -14.78603 -14.29912 -14.20434 -13.96943 -13.72916 -13.58757 -13.47729 -13.36287 -13.27337 -12.93159 -12.80266 -12.57597 -12.50286 -12.42244 -12.11487 -11.96030 -11.89038 -11.50039 -11.44728 -11.14580 -10.78090 -10.34981 -10.23516 -10.01213 -9.52332 -9.39695 -8.45831 -5.94667 0.47457 1.27348 1.40179 1.41682 1.52973 1.56869 2.05304 2.20950 2.29958 2.42428 2.75109 2.87851 3.21135 3.41362 3.47464 3.57453 3.69138 3.93390 3.97341 4.15138 4.17025 4.24934 4.35410 4.38274 4.44016 4.45600 4.54606 4.57840 4.61371 4.79117 4.86230 4.92429 4.94099 5.04679 5.07621 5.12341 5.27131 5.41119 5.44841 5.49898 5.84056 5.87847 6.08870 6.29192 6.33390 6.60839 6.79501 7.10522 7.13053 7.56248 8.12205 8.71450 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009044 B = 0.002790 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.155673 B =10034.603186 C =12672.885375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.076 3.924 3 H 0.065 0.935 4 C 0.122 3.878 5 N -0.715 5.715 6 C 0.605 3.395 7 O -0.575 6.575 8 C -0.095 4.095 9 C 0.061 3.939 10 N -0.475 5.475 11 C 0.180 3.820 12 N -0.492 5.492 13 C -0.047 4.047 14 C -0.113 4.113 15 C 0.091 3.909 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.571 5.571 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.271 1.271 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.406 0.594 35 H 0.204 0.796 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.340 0.660 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.425 -0.110 22.328 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.033 4.033 3 H 0.083 0.917 4 C -0.001 4.001 5 N -0.365 5.365 6 C 0.393 3.607 7 O -0.455 6.455 8 C -0.223 4.223 9 C -0.080 4.080 10 N -0.156 5.156 11 C -0.086 4.086 12 N -0.213 5.213 13 C -0.086 4.086 14 C -0.151 4.151 15 C -0.028 4.028 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.208 5.208 21 C -0.465 4.465 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.198 1.198 27 H -0.193 1.193 28 H -0.196 1.196 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.242 0.758 35 H 0.221 0.779 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.160 0.840 43 H 0.127 0.873 44 H 0.086 0.914 45 H 0.231 0.769 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.323 -1.011 22.210 25.420 hybrid contribution 0.905 0.282 -0.469 1.058 sum 13.228 -0.729 21.742 25.460 Atomic orbital electron populations 1.21737 0.92014 1.02687 1.02812 1.21893 0.97909 0.96268 0.87223 0.91669 1.21656 0.78460 1.01617 0.98353 1.45853 1.08324 1.58891 1.23451 1.17030 0.85004 0.76863 0.81837 1.90743 1.69621 1.50517 1.34655 1.20508 0.93777 1.11793 0.96254 1.22435 0.81677 1.02712 1.01164 1.46739 1.07512 1.42206 1.19160 1.25381 0.95966 0.98937 0.88284 1.70127 1.00850 1.23319 1.26975 1.20989 0.82275 1.05800 0.99509 1.22814 0.97980 1.01315 0.92996 1.22976 0.74159 1.02575 1.03097 1.60187 1.34610 1.32778 1.03869 1.21621 1.02582 0.93614 0.88999 1.20858 0.83270 0.87969 0.85461 1.90499 1.56655 1.18313 1.85589 1.41899 1.58243 1.12566 1.08126 1.19622 1.42283 0.95927 0.88635 0.90498 1.26034 0.97184 0.96629 1.01319 1.69665 1.48530 1.09654 1.28215 0.84998 0.78738 0.77833 0.76818 1.19828 1.19301 1.19624 0.89734 0.92104 0.92579 0.91568 0.89129 0.75799 0.77922 0.87680 0.87477 0.88320 0.84599 0.87136 0.86594 0.84010 0.87339 0.91449 0.76925 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.41 71.98 0.68 -2.27 16 2 C 0.08 1.94 2.81 44.91 0.13 2.07 16 3 H 0.07 1.48 7.80 -2.39 -0.02 1.47 16 4 C 0.12 3.21 5.31 86.38 0.46 3.67 16 5 N -0.71 -21.26 4.99 -466.46 -2.33 -23.58 16 6 C 0.61 19.63 7.81 86.63 0.68 20.30 16 7 O -0.57 -20.57 16.88 -4.12 -0.07 -20.64 16 8 C -0.09 -2.85 6.97 40.50 0.28 -2.56 16 9 C 0.06 1.39 11.75 83.63 0.98 2.37 16 10 N -0.47 -8.39 3.55 -508.29 -1.80 -10.19 16 11 C 0.18 4.02 8.58 138.18 1.19 5.21 16 12 N -0.49 -15.04 11.01 -175.93 -1.94 -16.98 16 13 C -0.05 -0.53 6.85 30.64 0.21 -0.32 16 14 C -0.11 -0.32 7.16 31.56 0.23 -0.09 16 15 C 0.09 0.54 7.78 86.73 0.67 1.21 16 16 N -0.68 -23.25 5.93 -495.59 -2.94 -26.18 16 17 C 0.06 2.31 5.97 85.56 0.51 2.82 16 18 C 0.44 21.70 7.82 87.66 0.69 22.39 16 19 O -0.62 -36.33 15.78 -3.06 -0.05 -36.38 16 20 N -0.57 -30.15 5.29 -306.99 -1.62 -31.77 16 21 C -0.34 -19.51 9.68 84.04 0.81 -18.70 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 24 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 25 Si 0.99 43.57 29.55 68.60 2.03 45.59 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 29 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.06 1.36 7.45 -2.39 -0.02 1.34 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.41 12.43 7.08 -92.71 -0.66 11.77 16 35 H 0.20 3.68 8.06 -2.91 -0.02 3.65 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.14 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.34 12.81 6.41 -89.69 -0.58 12.23 16 43 H 0.11 3.48 7.43 -2.39 -0.02 3.46 16 44 H 0.07 2.13 8.06 -2.39 -0.02 2.12 16 45 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 46 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -82.93 387.81 -1.38 -84.31 By element: Atomic # 1 Polarization: 50.80 SS G_CDS: -0.93 Total: 49.88 kcal Atomic # 6 Polarization: 27.93 SS G_CDS: 7.98 Total: 35.91 kcal Atomic # 7 Polarization: -148.33 SS G_CDS: -10.34 Total: -158.68 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -0.12 Total: -57.02 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -82.93 -1.38 -84.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731592285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.549 kcal (2) G-P(sol) polarization free energy of solvation -82.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds