Wall clock time and date at job start Tue Mar 31 2020 18:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46768 * 2 1 4 4 C 1.53000 * 109.47140 * 240.00396 * 2 1 3 5 5 N 1.46505 * 109.47130 * 184.99695 * 4 2 1 6 6 C 1.34773 * 119.99900 * 179.97438 * 5 4 2 7 7 O 1.21624 * 119.99939 * 359.97438 * 6 5 4 8 8 C 1.47326 * 119.99888 * 180.02562 * 6 5 4 9 9 C 1.36297 * 126.22753 * 179.97438 * 8 6 5 10 10 N 1.35752 * 106.91853 * 179.97438 * 9 8 6 11 11 C 1.35686 * 107.69288 * 0.17648 * 10 9 8 12 12 N 1.30599 * 108.91063 * 359.76482 * 11 10 9 13 13 C 1.51599 * 109.81640 * 179.77955 * 11 10 9 14 14 C 1.54498 * 104.28182 * 343.35499 * 13 11 10 15 15 C 1.47077 * 141.30415 * 180.23971 * 10 9 8 16 16 N 1.46897 * 109.47558 * 120.00092 * 2 1 3 17 17 C 1.46907 * 110.99690 * 275.00183 * 16 2 1 18 18 C 1.50702 * 109.46746 * 179.97438 * 17 16 2 19 19 O 1.21285 * 120.00392 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99739 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00181 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99442 * 359.97438 * 21 20 18 23 23 C 1.38942 * 120.00369 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99893 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00210 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46994 * 0.02562 * 25 23 21 27 27 H 1.48509 * 109.46901 * 119.99560 * 25 23 21 28 28 H 1.48493 * 109.47417 * 239.99584 * 25 23 21 29 29 H 1.09005 * 109.47393 * 299.99911 * 1 2 3 30 30 H 1.08994 * 109.47853 * 59.99900 * 1 2 3 31 31 H 1.09004 * 109.47219 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47233 * 64.99321 * 4 2 1 33 33 H 1.09007 * 109.46880 * 304.99557 * 4 2 1 34 34 H 0.97002 * 119.99649 * 359.97438 * 5 4 2 35 35 H 1.08002 * 126.53604 * 359.97438 * 9 8 6 36 36 H 1.08999 * 110.46790 * 224.65557 * 13 11 10 37 37 H 1.08997 * 110.57762 * 102.11185 * 13 11 10 38 38 H 1.09002 * 110.94401 * 267.21567 * 14 13 11 39 39 H 1.09003 * 110.94668 * 143.51619 * 14 13 11 40 40 H 1.08997 * 110.22675 * 78.09552 * 15 10 9 41 41 H 1.08992 * 110.22293 * 316.14301 * 15 10 9 42 42 H 1.00892 * 111.00450 * 151.04870 * 16 2 1 43 43 H 1.08995 * 109.47081 * 299.99757 * 17 16 2 44 44 H 1.08997 * 109.47224 * 60.00396 * 17 16 2 45 45 H 0.96996 * 120.00246 * 359.97438 * 20 18 17 46 46 H 0.97003 * 120.00461 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1907 6 6 4.1730 -1.4289 -2.1908 7 8 3.5681 -1.8860 -3.1418 8 6 5.6412 -1.5351 -2.1316 9 6 6.4452 -2.1156 -3.0666 10 7 7.7215 -1.9941 -2.6204 11 6 7.6816 -1.3500 -1.4268 12 7 6.4386 -1.0737 -1.1364 13 6 9.0869 -1.1929 -0.8803 14 6 9.9278 -2.2001 -1.6959 15 6 9.1051 -2.3223 -2.9962 16 7 2.0197 -0.6925 1.1994 17 6 2.0825 0.2227 2.3468 18 6 2.5875 -0.5218 3.5559 19 8 2.8679 -1.6986 3.4702 20 7 2.7284 0.1205 4.7324 21 6 3.1883 -0.5565 5.8323 22 1 3.4372 -1.6047 5.7560 23 6 3.3331 0.1055 7.0453 24 7 3.0296 1.3807 7.1381 25 14 3.9590 -0.8172 8.5441 26 1 4.2278 -2.2311 8.1782 27 1 5.2127 -0.1844 9.0269 28 1 2.9348 -0.7694 9.6182 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.7515 -0.1583 -2.1370 33 1 1.6053 -1.7198 -1.2952 34 1 3.9824 -0.4620 -0.4320 35 1 6.1274 -2.5830 -3.9869 36 1 9.1138 -1.4442 0.1800 37 1 9.4485 -0.1771 -1.0397 38 1 9.9912 -3.1600 -1.1832 39 1 10.9221 -1.8026 -1.8998 40 1 9.4709 -1.6160 -3.7413 41 1 9.1593 -3.3402 -3.3821 42 1 2.9173 -1.1204 1.0287 43 1 2.7588 1.0463 2.1181 44 1 1.0871 0.6163 2.5526 45 1 2.5051 1.0620 4.8008 46 1 3.1310 1.8431 7.9849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731592286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:47 Heat of formation + Delta-G solvation = -0.235592 kcal Electronic energy + Delta-G solvation = -28140.976085 eV Core-core repulsion = 24066.804886 eV Total energy + Delta-G solvation = -4074.171199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.76834 -39.56295 -38.31300 -36.92960 -36.47436 -34.03452 -33.61236 -32.33641 -31.24912 -30.77309 -29.31943 -27.62500 -26.73328 -26.06647 -23.98249 -23.27994 -21.90862 -20.56559 -20.28924 -20.10757 -19.22231 -17.91139 -17.67252 -16.99188 -16.47724 -16.15639 -15.94886 -15.49342 -15.21646 -14.77712 -14.44257 -14.35679 -14.13044 -13.96433 -13.81702 -13.72485 -13.35165 -13.31240 -12.89770 -12.68581 -12.47437 -12.41101 -12.14531 -11.81543 -11.65043 -11.60020 -11.56497 -11.34264 -11.05532 -10.76783 -10.43060 -10.30869 -10.17756 -10.07575 -10.00753 -9.47182 -9.09218 -8.63918 -8.39317 -8.03288 -7.90666 -6.37107 -3.77479 1.41494 2.17140 2.24137 3.19451 3.23013 3.29603 3.37353 3.40907 3.49766 3.92957 3.96929 4.10431 4.13388 4.20396 4.35968 4.61345 4.74913 4.77145 4.87009 4.91315 5.08356 5.13605 5.20454 5.28064 5.32004 5.37680 5.39576 5.42667 5.63395 5.78560 5.82884 5.84232 5.87600 6.04325 6.07874 6.28230 6.32889 6.36632 6.47291 6.58020 7.26092 7.42615 7.60040 7.68611 7.72306 8.11783 8.24075 8.66839 9.23141 9.59875 10.11781 10.80889 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008980 B = 0.002812 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.243655 B = 9953.439407 C =12638.883441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.119 3.881 5 N -0.716 5.716 6 C 0.610 3.390 7 O -0.548 6.548 8 C -0.055 4.055 9 C 0.053 3.947 10 N -0.481 5.481 11 C 0.192 3.808 12 N -0.446 5.446 13 C -0.043 4.043 14 C -0.130 4.130 15 C 0.102 3.898 16 N -0.665 5.665 17 C 0.049 3.951 18 C 0.442 3.558 19 O -0.581 6.581 20 N -0.565 5.565 21 C -0.296 4.296 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.408 0.592 35 H 0.186 0.814 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.350 0.650 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.791 -1.054 -21.557 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.005 4.005 5 N -0.368 5.368 6 C 0.396 3.604 7 O -0.426 6.426 8 C -0.185 4.185 9 C -0.085 4.085 10 N -0.164 5.164 11 C -0.073 4.073 12 N -0.165 5.165 13 C -0.082 4.082 14 C -0.168 4.168 15 C -0.019 4.019 16 N -0.300 5.300 17 C -0.083 4.083 18 C 0.228 3.772 19 O -0.464 6.464 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.245 0.755 35 H 0.203 0.797 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.171 0.829 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.683 -2.001 -21.440 24.038 hybrid contribution 1.350 0.550 0.295 1.487 sum 12.033 -1.450 -21.146 24.373 Atomic orbital electron populations 1.21732 0.93408 1.02925 1.01486 1.21806 0.97032 0.96004 0.89091 0.93314 1.21632 0.79097 1.02071 0.97687 1.45819 1.07881 1.59257 1.23827 1.16746 0.84200 0.77326 0.82108 1.90784 1.68875 1.49145 1.33764 1.20490 0.94077 1.09211 0.94686 1.22177 0.80879 1.03986 1.01468 1.46379 1.06433 1.43979 1.19602 1.24480 0.95353 0.99797 0.87624 1.70234 0.99053 1.21491 1.25740 1.20703 0.84797 1.01042 1.01633 1.22749 0.99050 1.01114 0.93876 1.22479 0.77162 1.03086 0.99204 1.60149 1.35059 1.32118 1.02676 1.21752 1.01397 0.93883 0.91309 1.19805 0.84809 0.88200 0.84426 1.90532 1.55068 1.16132 1.84711 1.41860 1.57958 1.12398 1.07980 1.19751 1.39625 0.96429 0.86783 0.87912 1.25247 0.97795 0.95781 0.99197 1.69622 1.48957 1.08853 1.27020 0.85812 0.78194 0.79642 0.80766 1.19232 1.20811 1.20790 0.92011 0.92518 0.91522 0.90747 0.90215 0.75542 0.79701 0.87811 0.88267 0.89134 0.87779 0.88878 0.88801 0.82861 0.93778 0.89453 0.77489 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.41 37.16 0.35 -1.27 16 2 C 0.07 0.93 2.81 -67.72 -0.19 0.74 16 3 H 0.05 0.60 7.80 -51.93 -0.40 0.20 16 4 C 0.12 1.56 5.31 -4.04 -0.02 1.54 16 5 N -0.72 -10.27 4.99 -61.41 -0.31 -10.58 16 6 C 0.61 9.46 7.81 -12.57 -0.10 9.37 16 7 O -0.55 -9.47 16.88 5.26 0.09 -9.38 16 8 C -0.06 -0.80 6.97 -83.20 -0.58 -1.38 16 9 C 0.05 0.61 11.75 -16.52 -0.19 0.41 16 10 N -0.48 -4.51 3.55 -112.01 -0.40 -4.91 16 11 C 0.19 2.16 8.58 -154.30 -1.32 0.84 16 12 N -0.45 -6.53 11.01 -6.96 -0.08 -6.61 16 13 C -0.04 -0.28 6.85 -26.65 -0.18 -0.46 16 14 C -0.13 -0.42 7.16 -25.23 -0.18 -0.60 16 15 C 0.10 0.45 7.78 -3.02 -0.02 0.42 16 16 N -0.66 -11.34 5.93 -107.99 -0.64 -11.98 16 17 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 18 C 0.44 10.75 7.82 -10.98 -0.09 10.67 16 19 O -0.58 -16.29 15.78 5.55 0.09 -16.21 16 20 N -0.57 -14.61 5.29 -10.96 -0.06 -14.67 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 25 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 34 H 0.41 5.96 7.08 -40.82 -0.29 5.67 16 35 H 0.19 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.08 8.14 -51.93 -0.42 -0.35 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.35 6.39 6.41 -39.30 -0.25 6.14 16 43 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 44 H 0.09 1.47 7.44 -51.93 -0.39 1.08 16 45 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 387.81 15.07 5.84 5.84 Total: -1.00 -36.74 387.81 -9.18 -45.92 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -6.62 Total: 17.34 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: -2.80 Total: 13.07 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -0.75 Total: -72.90 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: 0.18 Total: -25.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.74 -9.18 -45.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731592286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.686 kcal (2) G-P(sol) polarization free energy of solvation -36.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds