Wall clock time and date at job start Tue Mar 31 2020 18:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 N 1.46500 * 109.47170 * 65.00312 * 4 2 1 6 6 C 1.36937 * 120.00196 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99700 * 359.97438 * 6 5 4 8 8 C 1.38815 * 119.99841 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00402 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99884 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47314 * 89.99667 * 10 8 6 12 12 H 1.48493 * 109.47223 * 209.99874 * 10 8 6 13 13 H 1.48502 * 109.46758 * 329.99916 * 10 8 6 14 14 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 15 15 N 1.46492 * 109.47631 * 294.99736 * 14 2 1 16 16 C 1.34775 * 120.00395 * 180.02562 * 15 14 2 17 17 O 1.21286 * 120.00014 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00117 * 180.02562 * 16 15 14 19 19 H 1.09001 * 110.85738 * 62.33437 * 18 16 15 20 20 C 1.54627 * 110.96922 * 298.54329 * 18 16 15 21 21 C 1.51284 * 104.19841 * 266.68275 * 20 18 16 22 22 O 1.21300 * 124.94578 * 163.78003 * 21 20 18 23 23 N 1.34422 * 110.11282 * 343.74488 * 21 20 18 24 24 C 1.40766 * 124.35097 * 179.56980 * 23 21 20 25 25 C 1.40246 * 126.08099 * 179.71490 * 24 23 21 26 26 N 1.30833 * 108.33584 * 179.82183 * 25 24 23 27 27 N 1.40070 * 108.36649 * 0.43899 * 26 25 24 28 28 H 0.96997 * 126.05423 * 179.69206 * 27 26 25 29 29 C 1.35756 * 126.07802 * 0.02840 * 24 23 21 30 30 C 1.46768 * 111.30084 * 359.59451 * 23 21 20 31 31 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 34 34 H 1.09000 * 109.46875 * 184.99989 * 4 2 1 35 35 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 36 36 H 0.97001 * 119.99650 * 359.97438 * 5 4 2 37 37 H 0.97000 * 120.00170 * 180.02562 * 9 8 6 38 38 H 1.09001 * 109.47317 * 55.00458 * 14 2 1 39 39 H 1.09007 * 109.46669 * 175.00116 * 14 2 1 40 40 H 0.97000 * 119.99817 * 0.02562 * 15 14 2 41 41 H 1.08999 * 110.48536 * 25.35897 * 20 18 16 42 42 H 1.08998 * 110.48623 * 147.86804 * 20 18 16 43 43 H 1.08002 * 125.83260 * 0.02562 * 25 24 23 44 44 H 1.08005 * 126.21699 * 359.97438 * 29 24 23 45 45 H 1.08997 * 110.24327 * 258.01493 * 30 23 21 46 46 H 1.09003 * 110.24608 * 136.01659 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 0.0353 -2.4424 6 6 2.0012 -0.4209 -3.6856 7 1 2.5621 -1.3382 -3.7864 8 6 1.6344 0.2963 -4.8161 9 7 0.9512 1.4145 -4.6931 10 14 2.1106 -0.3256 -6.5119 11 1 1.0402 -1.2138 -7.0320 12 1 2.2867 0.8276 -7.4306 13 1 3.3835 -1.0851 -6.4211 14 6 2.0399 -0.7212 1.2493 15 7 1.6524 0.0354 2.4424 16 6 1.9964 -0.4131 3.6659 17 8 2.6263 -1.4433 3.7793 18 6 1.5972 0.3650 4.8933 19 1 0.5122 0.4211 4.9814 20 6 2.2252 1.7780 4.8813 21 6 3.5118 1.6188 5.6609 22 8 4.4320 2.4092 5.6520 23 7 3.4867 0.4745 6.3657 24 6 4.5360 0.0262 7.1901 25 6 4.5463 -1.1562 7.9443 26 7 5.6896 -1.2315 8.5759 27 7 6.4459 -0.0966 8.2564 28 1 7.3340 0.1094 8.5878 29 6 5.7154 0.6644 7.4011 30 6 2.2250 -0.2479 6.1648 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 3.1264 -0.7995 -1.2055 35 1 1.6054 -1.7198 -1.2951 36 1 1.1484 0.8590 -2.3517 37 1 0.6946 1.9155 -5.4832 38 1 1.6053 -1.7198 1.2952 39 1 3.1263 -0.7994 1.2057 40 1 1.1483 0.8591 2.3518 41 1 2.4350 2.0934 3.8592 42 1 1.5651 2.4930 5.3723 43 1 3.7483 -1.8823 7.9926 44 1 6.0180 1.6061 6.9672 45 1 1.5655 -0.1001 7.0199 46 1 2.4182 -1.3102 6.0156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732344420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:53 Heat of formation + Delta-G solvation = 17.716994 kcal Electronic energy + Delta-G solvation = -28219.755078 eV Core-core repulsion = 24146.362362 eV Total energy + Delta-G solvation = -4073.392716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.91878 -40.83435 -39.37394 -37.11342 -36.46812 -34.50479 -33.58262 -32.41674 -31.63261 -30.10713 -28.99970 -28.22294 -26.67250 -25.52126 -23.77357 -23.03615 -22.28368 -21.60805 -20.54837 -19.83104 -19.67413 -18.48550 -17.98501 -17.03721 -16.77249 -16.19122 -15.96803 -15.55792 -15.49520 -14.87618 -14.79253 -14.64543 -14.40154 -14.19320 -14.06522 -13.71231 -13.57457 -13.14141 -13.05961 -12.99983 -12.57996 -12.33711 -12.28507 -12.09288 -12.00076 -11.35006 -11.09773 -10.94313 -10.76970 -10.72659 -10.61797 -10.47132 -10.23085 -10.13467 -10.01759 -9.95560 -9.69190 -9.16294 -8.89630 -8.05883 -6.94494 -5.78964 -3.07400 1.44541 1.90373 2.19262 2.35516 2.72322 2.81243 2.92602 3.42805 3.48253 3.49789 3.74596 3.79081 4.23051 4.38211 4.52969 4.57515 4.62161 4.79320 4.94534 4.99397 5.09333 5.15767 5.15962 5.23386 5.28267 5.28809 5.33311 5.55777 5.71642 5.74969 5.90205 5.92895 6.05724 6.18295 6.32722 6.38751 6.42600 6.61257 6.64144 6.73580 6.82544 6.87407 7.23664 7.30794 7.68948 7.74131 7.99745 8.40164 9.51547 10.08408 10.43141 11.43964 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.001911 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.159738 B =14651.634917 C =14873.786777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.720 5.720 16 C 0.516 3.484 17 O -0.532 6.532 18 C -0.126 4.126 19 H 0.133 0.867 20 C -0.143 4.143 21 C 0.515 3.485 22 O -0.522 6.522 23 N -0.529 5.529 24 C 0.011 3.989 25 C 0.045 3.955 26 N -0.278 5.278 27 N -0.473 5.473 28 H 0.445 0.555 29 C 0.042 3.958 30 C 0.115 3.885 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.021 0.979 35 H 0.022 0.978 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.188 0.812 44 H 0.191 0.809 45 H 0.089 0.911 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.387 0.034 28.936 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.003 3.997 15 N -0.371 5.371 16 C 0.300 3.700 17 O -0.408 6.408 18 C -0.148 4.148 19 H 0.150 0.850 20 C -0.184 4.184 21 C 0.303 3.697 22 O -0.398 6.398 23 N -0.256 5.256 24 C -0.091 4.091 25 C -0.144 4.144 26 N -0.101 5.101 27 N -0.185 5.185 28 H 0.290 0.710 29 C -0.107 4.107 30 C -0.008 4.008 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.237 0.763 41 H 0.130 0.870 42 H 0.140 0.860 43 H 0.205 0.795 44 H 0.208 0.792 45 H 0.107 0.893 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.122 -1.098 29.647 29.743 hybrid contribution -0.354 0.943 -1.559 1.856 sum 1.769 -0.155 28.088 28.144 Atomic orbital electron populations 1.21794 0.94590 1.01958 1.01523 1.21558 0.96745 1.00533 0.94152 0.90483 1.20573 0.96635 0.94209 0.85386 1.42331 1.66943 1.27678 1.00572 1.19233 1.28728 1.05410 0.83644 0.91158 1.24738 1.01040 0.97383 0.97880 1.69651 1.43594 1.16544 1.28502 0.86176 0.78037 0.77520 0.84387 1.21721 1.21778 1.20754 1.21457 1.00245 0.95279 0.82756 1.46014 1.57325 1.27931 1.05853 1.20138 0.79666 0.85685 0.84470 1.90739 1.39326 1.24366 1.86368 1.22355 1.03416 0.95124 0.93867 0.84964 1.22357 0.95661 0.96764 1.03578 1.20848 0.88932 0.80366 0.79542 1.90687 1.38955 1.45624 1.64489 1.45071 1.15340 1.21846 1.43329 1.17542 0.90892 0.97840 1.02859 1.23681 0.96969 0.97017 0.96698 1.77278 1.04436 1.05271 1.23132 1.46144 1.17374 1.16846 1.38174 0.71000 1.22542 0.92128 0.99246 0.96739 1.22121 0.83590 0.98994 0.96049 0.91113 0.92793 0.93891 0.96150 0.95992 0.78203 0.93522 0.91134 0.91301 0.76348 0.86956 0.86039 0.79543 0.79199 0.89301 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.94 37.16 0.33 -1.57 16 2 C -0.11 -1.59 2.46 -90.62 -0.22 -1.81 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.16 3.08 5.65 -4.04 -0.02 3.06 16 5 N -0.73 -17.95 5.33 -59.91 -0.32 -18.27 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 10 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.13 1.58 5.06 -4.05 -0.02 1.56 16 15 N -0.72 -6.87 5.01 -60.30 -0.30 -7.18 16 16 C 0.52 5.16 7.16 -10.98 -0.08 5.08 16 17 O -0.53 -7.53 15.51 5.55 0.09 -7.45 16 18 C -0.13 -0.72 3.54 -90.14 -0.32 -1.04 16 19 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 20 C -0.14 -0.88 6.39 -26.74 -0.17 -1.05 16 21 C 0.51 5.31 7.98 -10.86 -0.09 5.22 16 22 O -0.52 -7.05 15.64 5.54 0.09 -6.97 16 23 N -0.53 -4.95 3.16 -112.48 -0.36 -5.30 16 24 C 0.01 0.11 6.80 -83.89 -0.57 -0.46 16 25 C 0.04 0.42 11.53 -17.22 -0.20 0.22 16 26 N -0.28 -2.84 12.69 30.70 0.39 -2.45 16 27 N -0.47 -3.97 7.40 30.69 0.23 -3.74 16 28 H 0.45 2.23 8.96 -182.62 -1.64 0.59 16 29 C 0.04 0.41 11.18 -16.68 -0.19 0.22 16 30 C 0.12 0.73 6.30 -3.12 -0.02 0.71 16 31 H 0.07 1.15 7.18 -51.93 -0.37 0.78 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.44 7.18 -51.93 -0.37 0.06 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.38 9.78 6.85 -40.82 -0.28 9.50 16 37 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.40 2.83 7.47 -40.82 -0.30 2.53 16 41 H 0.11 0.72 7.51 -51.93 -0.39 0.33 16 42 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.19 1.84 6.51 -52.48 -0.34 1.50 16 45 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.11 0.80 6.94 -51.93 -0.36 0.44 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -37.28 383.22 -8.36 -45.63 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.83 Total: 6.89 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.81 Total: 2.86 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: 0.36 Total: -64.05 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.17 Total: -14.41 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.28 -8.36 -45.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732344420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.349 kcal (2) G-P(sol) polarization free energy of solvation -37.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds