Wall clock time and date at job start Tue Mar 31 2020 18:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.52998 * 109.47234 * 120.00477 * 2 1 3 5 5 N 1.46510 * 109.46916 * 295.00219 * 4 2 1 6 6 C 1.36928 * 119.99875 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00523 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00202 * 179.97438 * 6 5 4 9 9 N 1.31613 * 120.00603 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99631 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47228 * 90.00029 * 10 8 6 12 12 H 1.48505 * 109.46918 * 209.99954 * 10 8 6 13 13 H 1.48499 * 109.46743 * 329.99555 * 10 8 6 14 14 C 1.53004 * 109.47137 * 240.00434 * 2 1 3 15 15 N 1.46499 * 109.47198 * 65.00035 * 14 2 1 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 2 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 14 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 14 19 19 H 1.08996 * 110.86308 * 62.33149 * 18 16 15 20 20 C 1.54625 * 110.96853 * 298.53899 * 18 16 15 21 21 C 1.51285 * 104.20056 * 266.68405 * 20 18 16 22 22 O 1.21305 * 124.94473 * 163.78461 * 21 20 18 23 23 N 1.34416 * 110.11082 * 343.74511 * 21 20 18 24 24 C 1.40767 * 124.35020 * 179.57076 * 23 21 20 25 25 C 1.40254 * 126.08241 * 179.72093 * 24 23 21 26 26 N 1.30833 * 108.33046 * 179.81799 * 25 24 23 27 27 N 1.40061 * 108.37273 * 0.43980 * 26 25 24 28 28 H 0.97007 * 126.05698 * 179.70010 * 27 26 25 29 29 C 1.35753 * 126.07898 * 0.02799 * 24 23 21 30 30 C 1.46766 * 111.30558 * 359.59503 * 23 21 20 31 31 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.46949 * 299.99844 * 1 2 3 33 33 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 34 34 H 1.09007 * 109.47047 * 54.99633 * 4 2 1 35 35 H 1.09000 * 109.47450 * 175.00009 * 4 2 1 36 36 H 0.96994 * 119.99660 * 359.97438 * 5 4 2 37 37 H 0.97003 * 120.00477 * 180.02562 * 9 8 6 38 38 H 1.09009 * 109.46730 * 304.99822 * 14 2 1 39 39 H 1.08998 * 109.46846 * 185.00367 * 14 2 1 40 40 H 0.97001 * 119.99790 * 359.97438 * 15 14 2 41 41 H 1.08995 * 110.48862 * 25.36348 * 20 18 16 42 42 H 1.09004 * 110.48515 * 147.87093 * 20 18 16 43 43 H 1.07998 * 125.83637 * 359.97438 * 25 24 23 44 44 H 1.08003 * 126.21880 * 359.97438 * 29 24 23 45 45 H 1.08999 * 110.24423 * 258.01425 * 30 23 21 46 46 H 1.09000 * 110.24456 * 136.01418 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6524 0.0352 2.4424 6 6 2.0010 -0.4210 3.6855 7 1 2.5614 -1.3387 3.7865 8 6 1.6342 0.2960 4.8161 9 7 1.9688 -0.1427 6.0110 10 14 0.6644 1.8831 4.6416 11 1 -0.7891 1.5802 4.6660 12 1 0.9992 2.7939 5.7657 13 1 1.0124 2.5368 3.3544 14 6 2.0401 -0.7212 -1.2493 15 7 1.6525 0.0355 -2.4424 16 6 1.9913 -0.4161 -3.6662 17 8 2.6213 -1.4462 -3.7795 18 6 1.5873 0.3591 -4.8938 19 1 2.0435 1.3490 -4.8954 20 6 0.0482 0.4590 -5.0034 21 6 -0.3386 -0.7139 -5.8771 22 8 -1.4613 -1.1611 -5.9829 23 7 0.7426 -1.1879 -6.5198 24 6 0.7244 -2.2829 -7.4042 25 6 1.8271 -2.8035 -8.0970 26 7 1.4198 -3.8181 -8.8157 27 7 0.0425 -3.9759 -8.6161 28 1 -0.5208 -4.6492 -9.0289 29 6 -0.3648 -3.0191 -7.7426 30 6 1.9449 -0.4175 -6.1805 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.6054 -1.7199 1.2950 35 1 3.1264 -0.7996 1.2055 36 1 1.1489 0.8592 2.3518 37 1 1.7122 0.3582 6.8010 38 1 1.6054 -1.7198 -1.2952 39 1 3.1264 -0.7994 -1.2056 40 1 1.1483 0.8592 -2.3517 41 1 -0.4111 0.3692 -4.0190 42 1 -0.2405 1.3991 -5.4736 43 1 2.8398 -2.4321 -8.0443 44 1 -1.3722 -2.8711 -7.3823 45 1 2.1874 0.2768 -6.9850 46 1 2.7833 -1.0889 -5.9952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732344423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:02 Heat of formation + Delta-G solvation = -8.126032 kcal Electronic energy + Delta-G solvation = -28343.378494 eV Core-core repulsion = 24268.865140 eV Total energy + Delta-G solvation = -4074.513354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.59871 -41.54454 -40.21202 -38.38666 -37.35138 -36.03173 -34.47577 -33.82305 -32.39550 -32.26005 -29.74827 -28.76966 -27.87245 -27.24747 -24.71346 -23.83336 -23.43330 -22.32681 -21.62065 -20.97281 -20.40754 -19.63036 -19.16116 -18.55451 -17.47217 -17.17185 -16.84355 -16.47171 -16.39833 -16.13861 -15.83513 -15.55937 -15.51477 -15.38766 -15.06396 -14.83740 -14.73235 -14.23994 -14.09381 -13.90794 -13.76856 -13.64031 -13.30641 -13.16322 -12.89261 -12.84702 -12.51714 -12.24580 -12.08027 -12.04097 -11.96287 -11.74822 -11.66573 -11.40820 -10.98123 -10.97464 -10.83216 -10.73848 -10.07317 -9.29464 -8.76513 -8.01879 -5.36194 0.71012 1.19374 1.38200 1.44009 1.51235 1.58068 1.60917 2.02650 2.12687 2.21437 2.49933 3.21555 3.26680 3.29222 3.56594 3.68580 3.79711 3.89479 3.95829 3.96808 4.06646 4.14866 4.38784 4.45516 4.52017 4.54856 4.60679 4.71185 4.73647 4.78454 4.84699 4.89406 4.94809 5.04529 5.08166 5.11349 5.30979 5.40717 5.50246 5.75085 5.76033 6.01520 6.21500 6.25524 6.55872 6.57204 7.03736 7.08848 7.26651 7.83611 8.04835 9.19694 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024817 B = 0.001992 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.007389 B =14053.316228 C =14280.148285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.094 0.906 4 C 0.157 3.843 5 N -0.753 5.753 6 C -0.238 4.238 7 H 0.051 0.949 8 C -0.069 4.069 9 N -0.986 5.986 10 Si 0.960 3.040 11 H -0.277 1.277 12 H -0.297 1.297 13 H -0.243 1.243 14 C 0.137 3.863 15 N -0.710 5.710 16 C 0.511 3.489 17 O -0.578 6.578 18 C -0.109 4.109 19 H 0.184 0.816 20 C -0.132 4.132 21 C 0.496 3.504 22 O -0.567 6.567 23 N -0.532 5.532 24 C -0.010 4.010 25 C 0.045 3.955 26 N -0.301 5.301 27 N -0.465 5.465 28 H 0.457 0.543 29 C 0.034 3.966 30 C 0.108 3.892 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.020 0.980 35 H 0.024 0.976 36 H 0.369 0.631 37 H 0.258 0.742 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.418 0.582 41 H 0.114 0.886 42 H 0.161 0.839 43 H 0.211 0.789 44 H 0.188 0.812 45 H 0.128 0.872 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.689 6.029 -34.626 35.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.112 0.888 4 C 0.031 3.969 5 N -0.399 5.399 6 C -0.369 4.369 7 H 0.069 0.931 8 C -0.260 4.260 9 N -0.636 5.636 10 Si 0.786 3.214 11 H -0.203 1.203 12 H -0.224 1.224 13 H -0.167 1.167 14 C 0.012 3.988 15 N -0.363 5.363 16 C 0.298 3.702 17 O -0.458 6.458 18 C -0.130 4.130 19 H 0.201 0.799 20 C -0.172 4.172 21 C 0.286 3.714 22 O -0.447 6.447 23 N -0.257 5.257 24 C -0.113 4.113 25 C -0.143 4.143 26 N -0.125 5.125 27 N -0.179 5.179 28 H 0.304 0.696 29 C -0.115 4.115 30 C -0.013 4.013 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.203 0.797 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.256 0.744 41 H 0.132 0.868 42 H 0.178 0.822 43 H 0.228 0.772 44 H 0.205 0.795 45 H 0.145 0.855 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.358 3.993 -35.439 35.821 hybrid contribution -1.140 0.713 1.363 1.914 sum -4.498 4.707 -34.076 34.692 Atomic orbital electron populations 1.21824 0.93808 1.02068 1.02364 1.21391 0.97184 1.00635 0.92345 0.88826 1.20725 0.96962 0.94109 0.85153 1.42610 1.67852 1.27645 1.01826 1.19025 1.28231 1.05573 0.84102 0.93083 1.25616 1.02710 1.03137 0.94528 1.69903 1.53401 1.42328 0.97983 0.85340 0.78586 0.79371 0.78076 1.20338 1.22373 1.16728 1.21084 0.99687 0.94780 0.83242 1.45830 1.57479 1.28078 1.04871 1.20955 0.78636 0.85152 0.85484 1.90740 1.41829 1.26141 1.87069 1.22436 0.96944 1.03000 0.90632 0.79923 1.22436 0.94041 0.98733 1.01953 1.21723 0.83535 0.85427 0.80669 1.90658 1.23061 1.64460 1.66472 1.45321 1.11155 1.28044 1.41217 1.17861 0.94535 0.96336 1.02519 1.24076 1.00312 0.94288 0.95643 1.77228 0.91213 1.19882 1.24137 1.46183 1.06849 1.27773 1.37078 0.69600 1.22611 1.00381 0.92331 0.96211 1.22419 0.86723 0.95526 0.96675 0.93435 0.93357 0.89742 0.96228 0.95813 0.79684 0.93334 0.92772 0.91859 0.74386 0.86821 0.82176 0.77235 0.79548 0.85451 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.94 71.98 0.64 -2.53 16 2 C -0.10 -2.31 2.46 -10.79 -0.03 -2.33 16 3 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 4 C 0.16 5.65 5.65 86.38 0.49 6.14 16 5 N -0.75 -33.82 5.13 -343.43 -1.76 -35.58 16 6 C -0.24 -13.58 10.47 84.03 0.88 -12.70 16 7 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 8 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 9 N -0.99 -63.29 13.97 21.65 0.30 -62.99 16 10 Si 0.96 44.04 27.74 68.60 1.90 45.94 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.24 -9.66 6.52 99.48 0.65 -9.01 16 14 C 0.14 2.95 5.06 86.38 0.44 3.39 16 15 N -0.71 -10.06 5.01 -463.05 -2.32 -12.38 16 16 C 0.51 8.16 7.16 87.66 0.63 8.79 16 17 O -0.58 -15.20 15.51 -3.04 -0.05 -15.25 16 18 C -0.11 -0.64 3.55 -10.48 -0.04 -0.67 16 19 H 0.18 -0.66 8.14 -2.39 -0.02 -0.68 16 20 C -0.13 -0.89 6.39 30.59 0.20 -0.70 16 21 C 0.50 8.79 7.98 87.90 0.70 9.50 16 22 O -0.57 -14.49 15.64 -3.11 -0.05 -14.53 16 23 N -0.53 -8.56 3.16 -628.34 -1.99 -10.54 16 24 C -0.01 -0.18 6.80 37.62 0.26 0.07 16 25 C 0.04 0.77 11.53 85.33 0.98 1.75 16 26 N -0.30 -5.88 12.69 -56.77 -0.72 -6.60 16 27 N -0.47 -7.53 7.40 -56.81 -0.42 -7.95 16 28 H 0.46 4.35 8.96 -213.34 -1.91 2.44 16 29 C 0.03 0.64 11.18 83.50 0.93 1.58 16 30 C 0.11 0.94 6.30 86.83 0.55 1.48 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.24 7.18 -2.39 -0.02 1.22 16 33 H 0.08 1.21 7.18 -2.39 -0.02 1.19 16 34 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.37 15.29 4.71 -92.71 -0.44 14.85 16 37 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.42 3.05 7.47 -92.71 -0.69 2.36 16 41 H 0.11 0.79 7.51 -2.39 -0.02 0.77 16 42 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.21 2.27 8.06 -2.91 -0.02 2.24 16 44 H 0.19 3.64 6.51 -2.91 -0.02 3.62 16 45 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.09 1.13 6.94 -2.39 -0.02 1.11 16 Total: -1.00 -88.60 380.10 -0.06 -88.66 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -2.06 Total: 21.02 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 7.10 Total: 10.21 kcal Atomic # 7 Polarization: -129.14 SS G_CDS: -6.91 Total: -136.05 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.10 Total: -29.78 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.90 Total: 45.94 kcal Total: -88.60 -0.06 -88.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732344423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.535 kcal (2) G-P(sol) polarization free energy of solvation -88.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds