Wall clock time and date at job start Tue Mar 31 2020 18:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47233 * 2 1 4 4 C 1.50706 * 109.46765 * 240.00710 * 2 1 3 5 5 O 1.21287 * 119.99595 * 239.99697 * 4 2 1 6 6 N 1.34774 * 120.00394 * 59.99824 * 4 2 1 7 7 C 1.46493 * 120.00345 * 179.97438 * 6 4 2 8 8 C 1.52994 * 109.47527 * 179.97438 * 7 6 4 9 9 H 1.08996 * 112.74509 * 284.23409 * 8 7 6 10 10 C 1.53507 * 113.47997 * 153.38033 * 8 7 6 11 11 C 1.53505 * 83.57804 * 219.21083 * 10 8 7 12 12 N 1.47483 * 113.47391 * 54.99774 * 8 7 6 13 13 C 1.46899 * 111.00428 * 253.47022 * 12 8 7 14 14 C 1.50696 * 109.47431 * 190.00291 * 13 12 8 15 15 O 1.21290 * 119.99914 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99861 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99815 * 179.97438 * 16 14 13 18 18 H 1.08002 * 120.00057 * 0.02562 * 17 16 14 19 19 C 1.38952 * 120.00038 * 180.02562 * 17 16 14 20 20 N 1.31407 * 120.00103 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99943 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46950 * 60.00078 * 21 19 17 23 23 H 1.48503 * 109.46844 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47297 * 300.00036 * 21 19 17 25 25 N 1.46495 * 109.47582 * 120.00405 * 2 1 3 26 26 C 1.34957 * 126.03329 * 34.97220 * 25 2 1 27 27 C 1.35317 * 107.74055 * 179.97438 * 26 25 2 28 28 C 1.39868 * 107.92640 * 0.02562 * 27 26 25 29 29 N 1.30844 * 108.19764 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47023 * 299.99321 * 1 2 3 31 31 H 1.09001 * 109.47219 * 59.99639 * 1 2 3 32 32 H 1.09006 * 109.46862 * 179.97438 * 1 2 3 33 33 H 0.96999 * 119.99704 * 0.02562 * 6 4 2 34 34 H 1.09003 * 109.46815 * 300.00257 * 7 6 4 35 35 H 1.09006 * 109.47041 * 59.99736 * 7 6 4 36 36 H 1.09005 * 114.16733 * 332.85945 * 10 8 7 37 37 H 1.08997 * 114.17443 * 105.56177 * 10 8 7 38 38 H 1.09000 * 113.48026 * 271.25877 * 11 10 8 39 39 H 1.09005 * 113.53455 * 140.79712 * 11 10 8 40 40 H 1.09008 * 109.47066 * 310.00581 * 13 12 8 41 41 H 1.09005 * 109.46551 * 69.99870 * 13 12 8 42 42 H 0.97000 * 120.00276 * 0.02562 * 16 14 13 43 43 H 0.96996 * 120.00600 * 180.02562 * 20 19 17 44 44 H 1.07995 * 126.12756 * 0.02562 * 26 25 2 45 45 H 1.08004 * 126.03278 * 180.02562 * 27 26 25 46 46 H 1.07995 * 125.89923 * 180.25722 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2498 -2.4547 7 6 2.1954 -0.9399 -3.6509 8 6 1.6847 -0.2191 -4.9000 9 1 0.6323 -0.4190 -5.1013 10 6 2.5894 -0.4050 -6.1262 11 6 2.2552 1.0713 -6.3816 12 7 2.0268 1.2152 -4.9317 13 6 0.8441 2.0446 -4.6648 14 6 1.1698 3.4890 -4.9450 15 8 2.2783 3.7973 -5.3287 16 7 0.2296 4.4383 -4.7681 17 6 0.5261 5.7525 -5.0224 18 1 1.5129 6.0269 -5.3649 19 6 -0.4431 6.7313 -4.8396 20 7 -1.6436 6.3975 -4.4224 21 14 -0.0393 8.5218 -5.1868 22 1 0.3589 8.6725 -6.6095 23 1 -1.2348 9.3602 -4.9164 24 1 1.0787 8.9559 -4.3112 25 7 2.0185 -0.6906 1.1960 26 6 1.4400 -1.7557 1.7896 27 6 2.1968 -2.0930 2.8595 28 6 3.2742 -1.2033 2.9223 29 7 3.1684 -0.3624 1.9255 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1493 0.5391 -2.5436 34 1 3.2854 -0.9395 -3.6507 35 1 1.8325 -1.9678 -3.6511 36 1 3.6360 -0.5903 -5.8846 37 1 2.1907 -1.0889 -6.8754 38 1 1.3552 1.2158 -6.9794 39 1 3.1018 1.6523 -6.7476 40 1 0.0239 1.7256 -5.3082 41 1 0.5509 1.9340 -3.6208 42 1 -0.6566 4.1919 -4.4601 43 1 -2.3203 7.0807 -4.2951 44 1 0.5357 -2.2507 1.4678 45 1 2.0030 -2.9056 3.5440 46 1 4.0604 -1.2120 3.6627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733204115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:01 Heat of formation + Delta-G solvation = 55.582682 kcal Electronic energy + Delta-G solvation = -28803.788661 eV Core-core repulsion = 24732.037924 eV Total energy + Delta-G solvation = -4071.750737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43401 -40.57299 -39.43548 -37.83231 -34.85632 -34.66479 -33.99195 -31.48621 -30.80631 -30.23414 -29.80915 -28.29046 -25.91230 -25.11914 -23.83736 -23.19837 -21.54530 -21.15356 -20.18896 -19.66938 -19.36891 -18.00599 -17.97199 -17.29409 -16.30722 -16.16260 -15.71882 -15.48518 -15.21804 -14.70863 -14.56756 -14.50206 -14.10662 -14.01298 -13.83255 -13.73263 -13.48345 -13.09368 -12.89768 -12.78097 -12.59176 -12.43316 -12.09806 -11.87941 -11.74563 -11.59107 -11.45846 -11.11471 -10.91545 -10.76418 -10.62926 -10.49985 -10.28701 -10.19480 -9.57411 -9.47502 -9.22181 -8.87670 -8.67871 -8.36306 -8.05247 -6.49888 -3.90832 1.73680 2.19741 2.36593 2.80057 3.01948 3.14596 3.21174 3.25383 3.76967 3.87338 4.12131 4.17068 4.33318 4.43326 4.56148 4.64906 4.67215 4.84008 4.86927 4.89704 5.08042 5.13351 5.21067 5.26912 5.31060 5.37159 5.42860 5.52670 5.53868 5.62920 5.68768 5.70673 5.77243 5.90915 5.96546 6.09413 6.17084 6.24627 6.46825 6.54493 6.82444 7.08168 7.26696 7.47574 7.62290 7.96275 7.96751 8.51952 9.09755 9.44124 9.95654 10.67615 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010869 B = 0.002813 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.626315 B = 9952.222350 C =11813.720832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.131 0.869 4 C 0.503 3.497 5 O -0.526 6.526 6 N -0.714 5.714 7 C 0.142 3.858 8 C 0.003 3.997 9 H 0.084 0.916 10 C -0.135 4.135 11 C 0.014 3.986 12 N -0.437 5.437 13 C 0.008 3.992 14 C 0.442 3.558 15 O -0.575 6.575 16 N -0.562 5.562 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.024 3.976 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 N -0.353 5.353 26 C 0.067 3.933 27 C -0.276 4.276 28 C 0.045 3.955 29 N -0.289 5.289 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.402 0.598 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.391 0.609 43 H 0.273 0.727 44 H 0.169 0.831 45 H 0.146 0.854 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 -17.706 7.077 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 H 0.149 0.851 4 C 0.286 3.714 5 O -0.402 6.402 6 N -0.367 5.367 7 C 0.018 3.982 8 C -0.107 4.107 9 H 0.101 0.899 10 C -0.174 4.174 11 C -0.115 4.115 12 N -0.159 5.159 13 C -0.124 4.124 14 C 0.227 3.773 15 O -0.459 6.459 16 N -0.199 5.199 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.178 4.178 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.198 1.198 25 N -0.135 5.135 26 C -0.079 4.079 27 C -0.306 4.306 28 C -0.142 4.142 29 N -0.109 5.109 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.238 0.762 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.224 0.776 43 H 0.082 0.918 44 H 0.186 0.814 45 H 0.164 0.836 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.038 -16.698 6.671 18.011 hybrid contribution -1.895 0.272 -0.072 1.916 sum -0.857 -16.425 6.599 17.722 Atomic orbital electron populations 1.22171 0.90406 1.04182 1.05167 1.21122 0.96210 0.98058 0.81216 0.85098 1.20663 0.80932 0.85084 0.84732 1.90753 1.36937 1.26015 1.86491 1.45893 1.53588 1.32128 1.05117 1.21359 1.00036 0.94959 0.81801 1.23819 0.99501 0.92119 0.95284 0.89865 1.23196 1.00521 0.97451 0.96197 1.23584 1.02431 0.95220 0.90277 1.68894 1.29524 1.01281 1.16231 1.22544 0.92967 0.95425 1.01450 1.19576 0.86322 0.85985 0.85447 1.90544 1.22327 1.82090 1.50914 1.41851 1.12721 1.06536 1.58818 1.19644 0.99516 0.81605 1.42200 0.87972 1.25251 0.94907 1.00561 0.97057 1.69587 1.03398 1.35090 1.46220 0.85924 0.77752 0.81477 0.79145 1.19886 1.20924 1.19817 1.48183 1.19596 1.24403 1.21291 1.22398 0.99829 0.90764 0.94897 1.21444 0.99372 1.06349 1.03405 1.23873 0.99154 0.94039 0.97127 1.77407 1.01935 1.24300 1.07252 0.89831 0.89127 0.90906 0.76173 0.90636 0.91137 0.88601 0.90427 0.91488 0.88806 0.92425 0.90060 0.77569 0.91756 0.81393 0.83609 0.80074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 8.73 37.16 0.32 -0.83 16 2 C 0.14 1.53 3.73 -69.08 -0.26 1.28 16 3 H 0.13 1.43 8.14 -51.93 -0.42 1.00 16 4 C 0.50 6.51 7.22 -10.98 -0.08 6.43 16 5 O -0.53 -8.85 16.42 5.55 0.09 -8.76 16 6 N -0.71 -8.06 5.36 -60.30 -0.32 -8.38 16 7 C 0.14 1.58 5.81 -4.05 -0.02 1.56 16 8 C 0.00 0.03 3.26 -71.44 -0.23 -0.20 16 9 H 0.08 0.77 7.77 -51.93 -0.40 0.36 16 10 C -0.14 -1.38 8.00 -26.21 -0.21 -1.59 16 11 C 0.01 0.19 6.71 -7.55 -0.05 0.14 16 12 N -0.44 -6.44 5.63 -237.95 -1.34 -7.78 16 13 C 0.01 0.13 5.07 -4.98 -0.03 0.11 16 14 C 0.44 9.80 7.62 -10.99 -0.08 9.71 16 15 O -0.58 -15.03 15.34 5.55 0.09 -14.95 16 16 N -0.56 -13.48 5.29 -10.97 -0.06 -13.54 16 17 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 18 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 20 N -0.90 -23.62 13.05 55.50 0.72 -22.89 16 21 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 N -0.35 -4.49 3.02 -55.99 -0.17 -4.66 16 26 C 0.07 0.72 10.58 -17.22 -0.18 0.54 16 27 C -0.28 -2.88 10.80 -40.01 -0.43 -3.31 16 28 C 0.04 0.52 12.03 -17.36 -0.21 0.31 16 29 N -0.29 -4.20 12.58 30.62 0.39 -3.82 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.53 7.56 -51.93 -0.39 0.14 16 32 H 0.07 0.46 7.16 -51.93 -0.37 0.08 16 33 H 0.40 4.12 5.64 -40.82 -0.23 3.89 16 34 H 0.08 0.97 7.88 -51.93 -0.41 0.56 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.98 7.94 -51.93 -0.41 0.57 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.89 7.70 -51.93 -0.40 0.49 16 39 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 40 H 0.06 0.79 7.56 -51.92 -0.39 0.40 16 41 H 0.08 1.08 6.33 -51.93 -0.33 0.75 16 42 H 0.39 8.85 7.90 -40.82 -0.32 8.53 16 43 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 44 H 0.17 1.27 7.26 -52.49 -0.38 0.89 16 45 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 46 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -35.77 385.26 -8.04 -43.81 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -6.51 Total: 13.18 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -1.70 Total: 6.44 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.78 Total: -61.07 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.18 Total: -23.70 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.77 -8.04 -43.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733204115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.394 kcal (2) G-P(sol) polarization free energy of solvation -35.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds