Wall clock time and date at job start Tue Mar 31 2020 18:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47233 * 2 1 4 4 C 1.50706 * 109.46765 * 240.00710 * 2 1 3 5 5 O 1.21287 * 119.99595 * 239.99697 * 4 2 1 6 6 N 1.34774 * 120.00394 * 59.99824 * 4 2 1 7 7 C 1.46493 * 120.00345 * 179.97438 * 6 4 2 8 8 C 1.52994 * 109.47527 * 179.97438 * 7 6 4 9 9 H 1.08996 * 112.74509 * 284.23409 * 8 7 6 10 10 C 1.53507 * 113.47997 * 153.38033 * 8 7 6 11 11 C 1.53505 * 83.57804 * 219.21083 * 10 8 7 12 12 N 1.47483 * 113.47391 * 54.99774 * 8 7 6 13 13 C 1.46899 * 111.00428 * 253.47022 * 12 8 7 14 14 C 1.50696 * 109.47431 * 190.00291 * 13 12 8 15 15 O 1.21290 * 119.99914 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99861 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99815 * 179.97438 * 16 14 13 18 18 H 1.08002 * 120.00057 * 0.02562 * 17 16 14 19 19 C 1.38952 * 120.00038 * 180.02562 * 17 16 14 20 20 N 1.31407 * 120.00103 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99943 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46950 * 60.00078 * 21 19 17 23 23 H 1.48503 * 109.46844 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47297 * 300.00036 * 21 19 17 25 25 N 1.46495 * 109.47582 * 120.00405 * 2 1 3 26 26 C 1.34957 * 126.03329 * 34.97220 * 25 2 1 27 27 C 1.35317 * 107.74055 * 179.97438 * 26 25 2 28 28 C 1.39868 * 107.92640 * 0.02562 * 27 26 25 29 29 N 1.30844 * 108.19764 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47023 * 299.99321 * 1 2 3 31 31 H 1.09001 * 109.47219 * 59.99639 * 1 2 3 32 32 H 1.09006 * 109.46862 * 179.97438 * 1 2 3 33 33 H 0.96999 * 119.99704 * 0.02562 * 6 4 2 34 34 H 1.09003 * 109.46815 * 300.00257 * 7 6 4 35 35 H 1.09006 * 109.47041 * 59.99736 * 7 6 4 36 36 H 1.09005 * 114.16733 * 332.85945 * 10 8 7 37 37 H 1.08997 * 114.17443 * 105.56177 * 10 8 7 38 38 H 1.09000 * 113.48026 * 271.25877 * 11 10 8 39 39 H 1.09005 * 113.53455 * 140.79712 * 11 10 8 40 40 H 1.09008 * 109.47066 * 310.00581 * 13 12 8 41 41 H 1.09005 * 109.46551 * 69.99870 * 13 12 8 42 42 H 0.97000 * 120.00276 * 0.02562 * 16 14 13 43 43 H 0.96996 * 120.00600 * 180.02562 * 20 19 17 44 44 H 1.07995 * 126.12756 * 0.02562 * 26 25 2 45 45 H 1.08004 * 126.03278 * 180.02562 * 27 26 25 46 46 H 1.07995 * 125.89923 * 180.25722 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2498 -2.4547 7 6 2.1954 -0.9399 -3.6509 8 6 1.6847 -0.2191 -4.9000 9 1 0.6323 -0.4190 -5.1013 10 6 2.5894 -0.4050 -6.1262 11 6 2.2552 1.0713 -6.3816 12 7 2.0268 1.2152 -4.9317 13 6 0.8441 2.0446 -4.6648 14 6 1.1698 3.4890 -4.9450 15 8 2.2783 3.7973 -5.3287 16 7 0.2296 4.4383 -4.7681 17 6 0.5261 5.7525 -5.0224 18 1 1.5129 6.0269 -5.3649 19 6 -0.4431 6.7313 -4.8396 20 7 -1.6436 6.3975 -4.4224 21 14 -0.0393 8.5218 -5.1868 22 1 0.3589 8.6725 -6.6095 23 1 -1.2348 9.3602 -4.9164 24 1 1.0787 8.9559 -4.3112 25 7 2.0185 -0.6906 1.1960 26 6 1.4400 -1.7557 1.7896 27 6 2.1968 -2.0930 2.8595 28 6 3.2742 -1.2033 2.9223 29 7 3.1684 -0.3624 1.9255 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1493 0.5391 -2.5436 34 1 3.2854 -0.9395 -3.6507 35 1 1.8325 -1.9678 -3.6511 36 1 3.6360 -0.5903 -5.8846 37 1 2.1907 -1.0889 -6.8754 38 1 1.3552 1.2158 -6.9794 39 1 3.1018 1.6523 -6.7476 40 1 0.0239 1.7256 -5.3082 41 1 0.5509 1.9340 -3.6208 42 1 -0.6566 4.1919 -4.4601 43 1 -2.3203 7.0807 -4.2951 44 1 0.5357 -2.2507 1.4678 45 1 2.0030 -2.9056 3.5440 46 1 4.0604 -1.2120 3.6627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733204115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:00 Heat of formation + Delta-G solvation = 26.540200 kcal Electronic energy + Delta-G solvation = -28805.048037 eV Core-core repulsion = 24732.037924 eV Total energy + Delta-G solvation = -4073.010113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.29166 -41.63193 -40.49095 -39.54226 -35.99440 -35.79304 -35.49629 -33.33805 -32.09801 -31.09792 -30.62387 -29.18657 -27.55483 -25.89601 -25.36548 -24.13837 -22.47212 -21.98590 -21.13287 -21.07420 -20.56141 -19.91943 -18.85926 -18.17543 -17.77229 -17.25762 -16.86048 -16.57558 -16.40775 -16.31665 -15.73544 -15.64479 -15.38777 -15.19026 -15.07130 -14.60113 -14.43927 -14.24094 -13.91263 -13.72532 -13.54277 -13.48827 -13.32480 -13.10772 -12.92766 -12.78502 -12.62714 -12.45967 -12.38402 -12.14998 -11.92976 -11.68516 -11.63171 -11.49518 -11.19135 -10.39697 -10.34020 -10.19236 -10.01580 -9.77071 -9.51405 -8.47625 -5.95410 0.89305 1.37754 1.38001 1.41041 1.41730 1.50673 1.98591 2.03989 2.13428 2.27711 2.80865 3.18838 3.24394 3.39467 3.55613 3.60398 3.76760 3.78481 3.96448 4.04010 4.13558 4.17240 4.26022 4.35314 4.40439 4.49307 4.54891 4.59814 4.63891 4.71628 4.83494 4.87410 4.88199 4.99341 5.04918 5.15803 5.17240 5.26796 5.39820 5.42462 5.73775 5.91788 6.05488 6.09640 6.35417 6.60316 6.77206 7.01462 7.13042 7.56204 8.12901 8.69207 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010869 B = 0.002813 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.626315 B = 9952.222350 C =11813.720832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 H 0.123 0.877 4 C 0.503 3.497 5 O -0.570 6.570 6 N -0.705 5.705 7 C 0.143 3.857 8 C 0.018 3.982 9 H 0.114 0.886 10 C -0.117 4.117 11 C 0.004 3.996 12 N -0.469 5.469 13 C 0.021 3.979 14 C 0.439 3.561 15 O -0.621 6.621 16 N -0.571 5.571 17 C -0.333 4.333 18 H 0.074 0.926 19 C -0.008 4.008 20 N -0.917 5.917 21 Si 0.986 3.014 22 H -0.273 1.273 23 H -0.269 1.269 24 H -0.275 1.275 25 N -0.364 5.364 26 C 0.062 3.938 27 C -0.283 4.283 28 C 0.038 3.962 29 N -0.345 5.345 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.408 0.592 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.398 0.602 43 H 0.278 0.722 44 H 0.199 0.801 45 H 0.173 0.827 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.093 -19.225 7.328 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.031 3.969 3 H 0.141 0.859 4 C 0.287 3.713 5 O -0.449 6.449 6 N -0.357 5.357 7 C 0.019 3.981 8 C -0.091 4.091 9 H 0.131 0.869 10 C -0.155 4.155 11 C -0.125 4.125 12 N -0.192 5.192 13 C -0.111 4.111 14 C 0.227 3.773 15 O -0.507 6.507 16 N -0.209 5.209 17 C -0.462 4.462 18 H 0.093 0.907 19 C -0.208 4.208 20 N -0.557 5.557 21 Si 0.810 3.190 22 H -0.199 1.199 23 H -0.194 1.194 24 H -0.200 1.200 25 N -0.147 5.147 26 C -0.084 4.084 27 C -0.312 4.312 28 C -0.148 4.148 29 N -0.166 5.166 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.246 0.754 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.232 0.768 43 H 0.087 0.913 44 H 0.216 0.784 45 H 0.190 0.810 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.076 -18.217 6.918 19.516 hybrid contribution -1.182 0.697 -0.157 1.381 sum -2.258 -17.521 6.761 18.915 Atomic orbital electron populations 1.22211 0.87282 1.05419 1.06263 1.21291 0.98512 0.97078 0.79996 0.85880 1.21034 0.80124 0.84512 0.85586 1.90727 1.38939 1.28094 1.87118 1.45858 1.53010 1.32002 1.04852 1.21380 0.98866 0.95945 0.81886 1.23848 1.01174 0.89039 0.95051 0.86858 1.23137 1.00529 0.95290 0.96530 1.23611 1.01579 0.97396 0.89931 1.68881 1.29780 1.03648 1.16880 1.22459 0.94197 0.90698 1.03733 1.20754 0.85108 0.88394 0.83084 1.90519 1.24247 1.83545 1.52346 1.41895 1.13416 1.06078 1.59517 1.19549 0.98922 0.83661 1.44104 0.90748 1.25919 0.94691 1.03770 0.96459 1.69631 1.03730 1.36253 1.46126 0.85089 0.77854 0.77285 0.78746 1.19858 1.19385 1.20025 1.48365 1.19434 1.25212 1.21670 1.23019 1.00627 0.90084 0.94635 1.21858 0.98775 1.06724 1.03851 1.24425 1.00005 0.93587 0.96801 1.77327 1.03814 1.26454 1.08995 0.89196 0.87522 0.89570 0.75434 0.92863 0.89448 0.89062 0.87163 0.90834 0.92281 0.89565 0.87291 0.76836 0.91272 0.78398 0.80990 0.77797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.73 71.98 0.63 -1.21 16 2 C 0.14 2.89 3.73 44.25 0.17 3.06 16 3 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 4 C 0.50 12.59 7.22 87.66 0.63 13.22 16 5 O -0.57 -19.05 16.42 -3.05 -0.05 -19.10 16 6 N -0.70 -14.64 5.36 -463.07 -2.48 -17.12 16 7 C 0.14 2.89 5.81 86.38 0.50 3.39 16 8 C 0.02 0.34 3.26 42.18 0.14 0.47 16 9 H 0.11 1.51 7.77 -2.39 -0.02 1.49 16 10 C -0.12 -2.10 8.00 30.93 0.25 -1.86 16 11 C 0.00 0.10 6.71 83.57 0.56 0.66 16 12 N -0.47 -13.17 5.63 -906.75 -5.10 -18.28 16 13 C 0.02 0.61 5.07 85.56 0.43 1.04 16 14 C 0.44 19.57 7.62 87.66 0.67 20.24 16 15 O -0.62 -33.47 15.34 -3.06 -0.05 -33.51 16 16 N -0.57 -27.59 5.29 -306.99 -1.62 -29.21 16 17 C -0.33 -18.31 9.68 84.04 0.81 -17.50 16 18 H 0.07 4.43 7.16 -2.91 -0.02 4.41 16 19 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 20 N -0.92 -47.39 13.05 21.66 0.28 -47.11 16 21 Si 0.99 42.05 29.55 68.60 2.03 44.08 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 N -0.36 -9.10 3.02 -331.05 -1.00 -10.10 16 26 C 0.06 1.23 10.58 83.54 0.88 2.11 16 27 C -0.28 -5.48 10.80 21.99 0.24 -5.24 16 28 C 0.04 0.86 12.03 85.23 1.03 1.89 16 29 N -0.34 -10.19 12.58 -57.02 -0.72 -10.91 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 0.92 7.56 -2.39 -0.02 0.90 16 32 H 0.09 0.81 7.16 -2.38 -0.02 0.79 16 33 H 0.41 7.38 5.64 -92.71 -0.52 6.86 16 34 H 0.05 1.33 7.88 -2.39 -0.02 1.32 16 35 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.09 1.75 7.94 -2.38 -0.02 1.73 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.85 7.70 -2.39 -0.02 1.83 16 39 H 0.06 1.97 8.13 -2.38 -0.02 1.95 16 40 H 0.09 2.07 7.56 -2.38 -0.02 2.05 16 41 H 0.11 2.57 6.33 -2.38 -0.02 2.55 16 42 H 0.40 17.83 7.90 -92.71 -0.73 17.09 16 43 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 44 H 0.20 2.45 7.26 -2.91 -0.02 2.43 16 45 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 46 H 0.21 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -81.27 385.26 -1.54 -82.81 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -0.23 Total: 38.12 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 7.40 Total: 20.33 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -10.64 Total: -132.73 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -0.10 Total: -52.61 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -81.27 -1.54 -82.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733204115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.352 kcal (2) G-P(sol) polarization free energy of solvation -81.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds