Wall clock time and date at job start Tue Mar 31 2020 18:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46574 * 2 1 4 4 C 1.50697 * 109.47491 * 120.00158 * 2 1 3 5 5 O 1.21284 * 119.99426 * 120.00134 * 4 2 1 6 6 N 1.34767 * 120.00152 * 300.00070 * 4 2 1 7 7 C 1.46500 * 120.00357 * 179.97438 * 6 4 2 8 8 C 1.52994 * 109.47693 * 180.02562 * 7 6 4 9 9 H 1.09000 * 112.78736 * 75.80778 * 8 7 6 10 10 C 1.53512 * 113.48068 * 206.62313 * 8 7 6 11 11 C 1.53506 * 83.57700 * 140.78903 * 10 8 7 12 12 N 1.47480 * 87.93326 * 333.97553 * 11 10 8 13 13 C 1.46903 * 110.99984 * 138.70369 * 12 11 10 14 14 C 1.50699 * 109.47398 * 91.52643 * 13 12 11 15 15 O 1.21297 * 119.99867 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00325 * 180.02562 * 14 13 12 17 17 C 1.37092 * 119.99974 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00583 * 0.02562 * 17 16 14 19 19 C 1.38955 * 120.00110 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00245 * 179.72419 * 19 17 16 21 21 Si 1.86803 * 119.99625 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47085 * 89.99660 * 21 19 17 23 23 H 1.48497 * 109.46789 * 209.99669 * 21 19 17 24 24 H 1.48490 * 109.47245 * 329.99818 * 21 19 17 25 25 N 1.46497 * 109.47167 * 240.00769 * 2 1 3 26 26 C 1.34956 * 126.03551 * 324.71437 * 25 2 1 27 27 C 1.35315 * 107.74397 * 179.84097 * 26 25 2 28 28 C 1.39869 * 107.92238 * 0.42237 * 27 26 25 29 29 N 1.30834 * 108.20289 * 359.73465 * 28 27 26 30 30 H 1.08994 * 109.47111 * 299.99135 * 1 2 3 31 31 H 1.08997 * 109.47704 * 59.99865 * 1 2 3 32 32 H 1.09001 * 109.46574 * 180.02562 * 1 2 3 33 33 H 0.97001 * 120.00209 * 0.02562 * 6 4 2 34 34 H 1.09004 * 109.46911 * 59.99906 * 7 6 4 35 35 H 1.09001 * 109.47039 * 300.00836 * 7 6 4 36 36 H 1.09001 * 114.17108 * 27.13817 * 10 8 7 37 37 H 1.09001 * 114.16357 * 254.43883 * 10 8 7 38 38 H 1.08996 * 113.47840 * 219.20837 * 11 10 8 39 39 H 1.08999 * 113.53246 * 88.74961 * 11 10 8 40 40 H 1.09005 * 109.47310 * 331.52351 * 13 12 11 41 41 H 1.08999 * 109.47201 * 211.53244 * 13 12 11 42 42 H 0.97005 * 119.99841 * 0.02562 * 16 14 13 43 43 H 0.97000 * 120.00281 * 180.02562 * 20 19 17 44 44 H 1.08001 * 126.12585 * 359.97438 * 26 25 2 45 45 H 1.08000 * 126.03751 * 180.15437 * 27 26 25 46 46 H 1.07997 * 125.89849 * 179.76225 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7298 -1.6965 1.1189 6 7 1.7069 -0.2501 2.4545 7 6 2.1949 -0.9410 3.6506 8 6 1.6845 -0.2202 4.8999 9 1 0.6321 -0.4195 5.1020 10 6 2.5889 -0.4071 6.1262 11 6 2.2556 1.0693 6.3821 12 7 2.0276 1.2138 4.9322 13 6 0.8455 2.0441 4.6653 14 6 1.2649 3.4846 4.5238 15 8 2.4336 3.7897 4.6349 16 7 0.3414 4.4341 4.2749 17 6 0.7229 5.7446 4.1467 18 1 1.7636 6.0162 4.2448 19 6 -0.2292 6.7235 3.8896 20 7 0.1358 7.9804 3.7721 21 14 -2.0292 6.2537 3.7193 22 1 -2.6852 6.3164 5.0500 23 1 -2.7014 7.1979 2.7910 24 1 -2.1318 4.8734 3.1814 25 7 2.0184 -0.6904 -1.1962 26 6 1.4431 -1.7590 -1.7866 27 6 2.1963 -2.0921 -2.8603 28 6 3.2738 -1.2025 -2.9229 29 7 3.1681 -0.3618 -1.9260 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 1.1489 0.5384 2.5436 34 1 3.2849 -0.9414 3.6507 35 1 1.8313 -1.9686 3.6504 36 1 3.6354 -0.5932 5.8848 37 1 2.1894 -1.0911 6.8751 38 1 3.1032 1.6487 6.7482 39 1 1.3559 1.2152 6.9797 40 1 0.1413 1.9502 5.4921 41 1 0.3690 1.7121 3.7429 42 1 -0.5934 4.1903 4.1872 43 1 -0.5289 8.6637 3.5929 44 1 0.5418 -2.2575 -1.4616 45 1 2.0023 -2.9043 -3.5451 46 1 4.0574 -1.2083 -3.6660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733204127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:03 Heat of formation + Delta-G solvation = 31.841259 kcal Electronic energy + Delta-G solvation = -29032.665512 eV Core-core repulsion = 24959.885270 eV Total energy + Delta-G solvation = -4072.780242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30224 -41.62593 -40.50188 -39.69733 -36.00464 -35.81848 -35.51730 -33.76865 -32.20384 -31.11224 -30.63634 -29.20475 -27.63796 -25.90592 -25.19028 -24.15174 -22.48519 -21.99692 -21.29424 -21.11381 -20.55632 -20.28392 -18.86064 -18.18465 -17.71951 -17.28146 -16.89709 -16.69069 -16.45367 -16.36564 -15.82646 -15.46689 -15.25083 -15.20507 -14.97317 -14.61083 -14.45397 -14.37927 -14.20818 -14.02051 -13.74166 -13.50528 -13.33270 -13.10320 -12.95739 -12.68305 -12.62537 -12.42914 -12.33898 -12.02710 -11.92687 -11.67204 -11.63307 -11.49016 -11.20251 -10.46400 -10.39195 -10.23971 -10.20250 -9.73399 -9.52202 -8.40060 -6.01673 0.88665 1.29709 1.36610 1.37248 1.40754 1.46274 1.96939 1.97961 2.11731 2.24617 2.63838 3.15264 3.19052 3.37342 3.52401 3.58940 3.75980 3.77782 3.94886 4.01380 4.10513 4.12545 4.23733 4.32207 4.38148 4.38476 4.53067 4.58654 4.62256 4.70974 4.82872 4.86027 4.87403 5.00387 5.03613 5.14912 5.18497 5.25614 5.42490 5.54664 5.72609 5.93307 6.05080 6.07365 6.33767 6.60999 6.76606 6.90394 7.00220 7.41462 8.00762 8.77979 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.003329 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.450351 B = 8409.953748 C =10436.642631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.119 0.881 4 C 0.503 3.497 5 O -0.570 6.570 6 N -0.705 5.705 7 C 0.141 3.859 8 C 0.020 3.980 9 H 0.122 0.878 10 C -0.117 4.117 11 C -0.004 4.004 12 N -0.477 5.477 13 C 0.017 3.983 14 C 0.451 3.549 15 O -0.612 6.612 16 N -0.590 5.590 17 C -0.328 4.328 18 H 0.049 0.951 19 C -0.018 4.018 20 N -0.938 5.938 21 Si 0.966 3.034 22 H -0.258 1.258 23 H -0.279 1.279 24 H -0.221 1.221 25 N -0.365 5.365 26 C 0.063 3.937 27 C -0.283 4.283 28 C 0.037 3.963 29 N -0.347 5.347 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.408 0.592 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.391 0.609 43 H 0.278 0.722 44 H 0.201 0.799 45 H 0.174 0.826 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 -25.277 -4.067 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 H 0.137 0.863 4 C 0.288 3.712 5 O -0.449 6.449 6 N -0.357 5.357 7 C 0.017 3.983 8 C -0.089 4.089 9 H 0.140 0.860 10 C -0.155 4.155 11 C -0.132 4.132 12 N -0.200 5.200 13 C -0.115 4.115 14 C 0.238 3.762 15 O -0.495 6.495 16 N -0.233 5.233 17 C -0.457 4.457 18 H 0.067 0.933 19 C -0.216 4.216 20 N -0.579 5.579 21 Si 0.786 3.214 22 H -0.183 1.183 23 H -0.204 1.204 24 H -0.144 1.144 25 N -0.147 5.147 26 C -0.082 4.082 27 C -0.312 4.312 28 C -0.148 4.148 29 N -0.168 5.168 30 H 0.126 0.874 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.245 0.755 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.135 0.865 42 H 0.226 0.774 43 H 0.088 0.912 44 H 0.218 0.782 45 H 0.191 0.809 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -7.468 -24.182 -3.829 25.597 hybrid contribution -1.325 0.470 -0.047 1.406 sum -8.793 -23.712 -3.876 25.586 Atomic orbital electron populations 1.22215 0.87028 1.05547 1.06310 1.21308 0.98745 0.96938 0.80100 0.86337 1.21009 0.80129 0.84481 0.85621 1.90724 1.38879 1.28147 1.87119 1.45837 1.53025 1.31962 1.04882 1.21420 0.98746 0.96086 0.82073 1.23857 1.01524 0.88757 0.94790 0.86013 1.23100 1.00335 0.95515 0.96579 1.23843 1.02178 0.97565 0.89644 1.68825 1.30327 1.03815 1.17068 1.22572 0.94113 0.90024 1.04799 1.20922 0.85636 0.88333 0.81261 1.90577 1.20471 1.83438 1.55031 1.42006 1.09148 1.06135 1.66005 1.18957 0.95312 0.83113 1.48336 0.93264 1.26181 1.05091 0.94263 0.96078 1.69819 1.37213 1.01813 1.49060 0.85351 0.75913 0.80601 0.79549 1.18269 1.20416 1.14410 1.48372 1.19523 1.25062 1.21735 1.23031 1.00678 0.89944 0.94575 1.21863 0.98834 1.06764 1.03763 1.24423 1.00015 0.93642 0.96758 1.77346 1.03842 1.26537 1.09110 0.87360 0.89245 0.89325 0.75489 0.93344 0.89288 0.89651 0.86808 0.92385 0.89158 0.88126 0.86537 0.77368 0.91230 0.78205 0.80907 0.77873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.74 71.98 0.63 -1.13 16 2 C 0.14 2.94 3.73 44.25 0.16 3.10 16 3 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 4 C 0.50 12.72 7.22 87.66 0.63 13.35 16 5 O -0.57 -19.18 16.41 -3.04 -0.05 -19.23 16 6 N -0.70 -14.42 5.36 -463.07 -2.48 -16.90 16 7 C 0.14 2.71 5.81 86.38 0.50 3.21 16 8 C 0.02 0.32 3.25 42.18 0.14 0.45 16 9 H 0.12 1.11 7.91 -2.39 -0.02 1.09 16 10 C -0.12 -1.80 8.00 30.94 0.25 -1.55 16 11 C 0.00 -0.08 7.69 83.57 0.64 0.56 16 12 N -0.48 -12.29 5.39 -906.75 -4.89 -17.18 16 13 C 0.02 0.42 5.04 85.56 0.43 0.85 16 14 C 0.45 19.04 7.83 87.66 0.69 19.73 16 15 O -0.61 -33.57 16.01 -3.08 -0.05 -33.62 16 16 N -0.59 -26.01 5.09 -306.98 -1.56 -27.57 16 17 C -0.33 -18.72 10.16 84.04 0.85 -17.87 16 18 H 0.05 3.42 7.39 -2.91 -0.02 3.40 16 19 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 20 N -0.94 -56.05 13.96 21.66 0.30 -55.75 16 21 Si 0.97 36.54 27.74 68.60 1.90 38.45 16 22 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 23 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.22 -6.56 6.52 99.48 0.65 -5.91 16 25 N -0.36 -9.32 3.02 -331.06 -1.00 -10.32 16 26 C 0.06 1.26 10.57 83.54 0.88 2.14 16 27 C -0.28 -5.57 10.80 21.99 0.24 -5.33 16 28 C 0.04 0.89 12.03 85.24 1.02 1.91 16 29 N -0.35 -10.64 12.58 -57.03 -0.72 -11.35 16 30 H 0.11 0.81 7.56 -2.39 -0.02 0.80 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.75 7.16 -2.39 -0.02 0.73 16 33 H 0.41 7.15 5.62 -92.71 -0.52 6.63 16 34 H 0.05 1.22 7.88 -2.38 -0.02 1.20 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.53 7.94 -2.39 -0.02 1.51 16 37 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.62 7.44 -2.39 -0.02 1.60 16 40 H 0.10 1.87 7.35 -2.38 -0.02 1.85 16 41 H 0.12 2.08 6.25 -2.39 -0.01 2.06 16 42 H 0.39 13.60 5.76 -92.70 -0.53 13.07 16 43 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.20 2.40 7.27 -2.91 -0.02 2.38 16 45 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 46 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -93.68 383.30 -1.09 -94.77 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -0.09 Total: 39.77 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 7.54 Total: 18.92 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -10.34 Total: -139.07 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -0.10 Total: -52.85 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 1.90 Total: 38.45 kcal Total: -93.68 -1.09 -94.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733204127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.614 kcal (2) G-P(sol) polarization free energy of solvation -93.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds