Wall clock time and date at job start Tue Mar 31 2020 18:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47175 * 2 1 4 4 C 1.50702 * 109.47215 * 119.99870 * 2 1 3 5 5 O 1.21281 * 120.00331 * 119.99948 * 4 2 1 6 6 N 1.34776 * 119.99827 * 300.00115 * 4 2 1 7 7 C 1.46502 * 119.99729 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47216 * 179.97438 * 7 6 4 9 9 H 1.09004 * 112.74302 * 284.22850 * 8 7 6 10 10 C 1.53511 * 113.47954 * 153.37746 * 8 7 6 11 11 C 1.53512 * 83.57653 * 219.20800 * 10 8 7 12 12 N 1.47483 * 113.47282 * 54.99631 * 8 7 6 13 13 C 1.46898 * 111.00152 * 253.46876 * 12 8 7 14 14 C 1.50701 * 109.47284 * 190.00331 * 13 12 8 15 15 O 1.21294 * 119.99668 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99721 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99565 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99971 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99993 * 179.97438 * 17 16 14 20 20 N 1.31415 * 119.99697 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00378 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47147 * 89.99607 * 21 19 17 23 23 H 1.48495 * 109.47492 * 209.99943 * 21 19 17 24 24 H 1.48503 * 109.46759 * 330.00209 * 21 19 17 25 25 N 1.46502 * 109.46935 * 239.99780 * 2 1 3 26 26 C 1.34948 * 126.03993 * 324.99535 * 25 2 1 27 27 C 1.35315 * 107.74520 * 179.97438 * 26 25 2 28 28 C 1.39870 * 107.92205 * 0.02562 * 27 26 25 29 29 N 1.30839 * 108.19862 * 359.97438 * 28 27 26 30 30 H 1.09006 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47000 * 299.99871 * 1 2 3 32 32 H 1.08992 * 109.47238 * 60.00089 * 1 2 3 33 33 H 0.96990 * 120.00352 * 0.02562 * 6 4 2 34 34 H 1.09007 * 109.47232 * 299.99888 * 7 6 4 35 35 H 1.08997 * 109.47572 * 59.99795 * 7 6 4 36 36 H 1.08997 * 114.16941 * 332.86068 * 10 8 7 37 37 H 1.09001 * 114.16923 * 105.56326 * 10 8 7 38 38 H 1.08989 * 113.47868 * 271.25606 * 11 10 8 39 39 H 1.09000 * 113.53026 * 140.79671 * 11 10 8 40 40 H 1.08998 * 109.47134 * 310.00716 * 13 12 8 41 41 H 1.09004 * 109.46832 * 70.00205 * 13 12 8 42 42 H 0.97000 * 120.00427 * 359.97438 * 16 14 13 43 43 H 0.97005 * 119.99731 * 179.97438 * 20 19 17 44 44 H 1.08007 * 126.12251 * 0.27272 * 26 25 2 45 45 H 1.08001 * 126.03507 * 180.02562 * 27 26 25 46 46 H 1.07997 * 125.89701 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 6 1.6860 -0.2186 4.9000 9 1 2.2247 0.7074 5.1010 10 6 1.5608 -1.1334 6.1264 11 6 0.2798 -0.3271 6.3822 12 7 0.2196 -0.0642 4.9322 13 6 -0.1693 1.3270 4.6652 14 6 -1.6398 1.5003 4.9458 15 8 -2.2989 0.5576 5.3308 16 7 -2.2224 2.7027 4.7690 17 6 -3.5600 2.8604 5.0248 18 1 -4.1467 2.0213 5.3683 19 6 -4.1607 4.1001 4.8430 20 7 -3.4464 5.1215 4.4264 21 14 -5.9834 4.3150 5.1908 22 1 -6.1735 4.7083 6.6101 23 1 -6.5350 5.3723 4.3060 24 1 -6.6907 3.0349 4.9329 25 7 2.0182 -0.6907 -1.1962 26 6 1.4402 -1.7560 -1.7894 27 6 2.1961 -2.0924 -2.8602 28 6 3.2734 -1.2024 -2.9231 29 7 3.1676 -0.3617 -1.9262 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.1488 0.5385 2.5436 34 1 1.8326 -1.9680 3.6509 35 1 3.2855 -0.9398 3.6506 36 1 1.3875 -2.1821 5.8851 37 1 2.3387 -0.9848 6.8753 38 1 0.4432 0.5696 6.9797 39 1 -0.5495 -0.9323 6.7485 40 1 0.4045 1.9944 5.3083 41 1 0.0321 1.5665 3.6211 42 1 -1.6952 3.4566 4.4615 43 1 -3.8658 5.9869 4.2991 44 1 0.5337 -2.2486 -1.4699 45 1 2.0019 -2.9045 -3.5451 46 1 4.0566 -1.2079 -3.6667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733204372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:08 Heat of formation + Delta-G solvation = 54.992321 kcal Electronic energy + Delta-G solvation = -28884.937697 eV Core-core repulsion = 24813.161360 eV Total energy + Delta-G solvation = -4071.776337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.42567 -40.57773 -39.43295 -37.84730 -34.83521 -34.65406 -34.00706 -31.49935 -30.81581 -30.22306 -29.77900 -28.27258 -25.92383 -25.07348 -23.84951 -23.19932 -21.53916 -21.14653 -20.18734 -19.64850 -19.37894 -18.01942 -17.97182 -17.29654 -16.26410 -16.17740 -15.65424 -15.56372 -15.21228 -14.74830 -14.54972 -14.49507 -14.08148 -13.95385 -13.81629 -13.68771 -13.61676 -12.97514 -12.88204 -12.68427 -12.58913 -12.43993 -12.05634 -11.86326 -11.75680 -11.60302 -11.46981 -11.14778 -10.92500 -10.78773 -10.63144 -10.46743 -10.30769 -10.19288 -9.60030 -9.46500 -9.22338 -8.89222 -8.66881 -8.38003 -8.06927 -6.51467 -3.92588 1.74540 2.19767 2.37367 2.80292 3.02577 3.10699 3.20587 3.25847 3.75315 3.86168 4.11735 4.21307 4.32869 4.45414 4.54967 4.65046 4.73152 4.85911 4.86984 4.90207 5.11970 5.20716 5.25628 5.29979 5.30639 5.37308 5.45604 5.53503 5.62134 5.63703 5.70600 5.75150 5.76701 5.92909 5.95768 6.08558 6.15762 6.24170 6.45450 6.54837 6.83354 7.06754 7.26859 7.46062 7.61636 7.95063 7.96610 8.50116 9.08086 9.42548 9.93781 10.65996 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.002850 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.615282 B = 9822.337788 C =11770.755321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.128 0.872 4 C 0.502 3.498 5 O -0.527 6.527 6 N -0.714 5.714 7 C 0.143 3.857 8 C 0.003 3.997 9 H 0.084 0.916 10 C -0.135 4.135 11 C 0.014 3.986 12 N -0.436 5.436 13 C 0.008 3.992 14 C 0.442 3.558 15 O -0.576 6.576 16 N -0.562 5.562 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.024 3.976 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.269 1.269 25 N -0.353 5.353 26 C 0.071 3.929 27 C -0.277 4.277 28 C 0.045 3.955 29 N -0.294 5.294 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.402 0.598 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.391 0.609 43 H 0.272 0.728 44 H 0.170 0.830 45 H 0.146 0.854 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.382 -8.214 -7.076 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.146 0.854 4 C 0.285 3.715 5 O -0.402 6.402 6 N -0.367 5.367 7 C 0.019 3.981 8 C -0.108 4.108 9 H 0.101 0.899 10 C -0.174 4.174 11 C -0.115 4.115 12 N -0.159 5.159 13 C -0.125 4.125 14 C 0.227 3.773 15 O -0.459 6.459 16 N -0.199 5.199 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.178 4.178 20 N -0.542 5.542 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 N -0.135 5.135 26 C -0.075 4.075 27 C -0.307 4.307 28 C -0.141 4.141 29 N -0.114 5.114 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.238 0.762 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.187 0.813 45 H 0.164 0.836 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 12.389 -8.659 -6.675 16.523 hybrid contribution -0.761 1.093 0.091 1.335 sum 11.628 -7.565 -6.584 15.356 Atomic orbital electron populations 1.22190 0.89964 1.04659 1.05284 1.21114 0.96474 0.97615 0.81167 0.85448 1.20681 0.80871 0.85155 0.84749 1.90752 1.37197 1.25760 1.86496 1.45893 1.53358 1.32373 1.05121 1.21358 0.98321 0.96662 0.81795 1.23826 0.92134 0.99503 0.95289 0.89859 1.23197 0.98285 0.99663 0.96214 1.23582 0.98063 0.99569 0.90287 1.68885 1.09722 1.21070 1.16207 1.22551 0.97423 0.90996 1.01492 1.19574 0.88001 0.84282 0.85452 1.90543 1.64528 1.39940 1.50926 1.41869 1.10085 1.09212 1.58764 1.19684 0.84392 0.96739 1.42121 0.87921 1.25259 1.00462 0.95025 0.97067 1.69605 1.36883 1.01509 1.46193 0.85867 0.82017 0.78235 0.78259 1.20379 1.20861 1.19368 1.48187 1.19598 1.24421 1.21304 1.22449 0.99785 0.90575 0.94719 1.21448 0.99388 1.06432 1.03388 1.23847 0.99135 0.94041 0.97088 1.77334 1.02214 1.24447 1.07421 0.90705 0.88795 0.89918 0.76173 0.90612 0.91166 0.88608 0.90435 0.91496 0.88808 0.92418 0.90054 0.77549 0.91789 0.81260 0.83582 0.80114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.73 37.16 0.32 -1.14 16 2 C 0.14 1.56 3.73 -69.08 -0.26 1.30 16 3 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.50 6.50 7.22 -10.98 -0.08 6.42 16 5 O -0.53 -8.85 16.42 5.56 0.09 -8.76 16 6 N -0.71 -8.05 5.36 -60.29 -0.32 -8.37 16 7 C 0.14 1.58 5.81 -4.04 -0.02 1.56 16 8 C 0.00 0.03 3.25 -71.43 -0.23 -0.20 16 9 H 0.08 0.79 7.77 -51.93 -0.40 0.39 16 10 C -0.14 -1.36 8.00 -26.20 -0.21 -1.57 16 11 C 0.01 0.19 6.71 -7.54 -0.05 0.14 16 12 N -0.44 -6.26 5.63 -237.93 -1.34 -7.59 16 13 C 0.01 0.12 5.07 -4.98 -0.03 0.09 16 14 C 0.44 9.60 7.62 -10.98 -0.08 9.51 16 15 O -0.58 -14.70 15.34 5.55 0.09 -14.61 16 16 N -0.56 -13.29 5.29 -10.96 -0.06 -13.34 16 17 C -0.30 -7.96 9.68 -14.93 -0.14 -8.11 16 18 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -23.45 13.05 55.50 0.72 -22.72 16 21 Si 0.93 20.31 29.55 -169.99 -5.02 15.28 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 N -0.35 -4.50 3.02 -55.99 -0.17 -4.67 16 26 C 0.07 0.80 10.58 -17.22 -0.18 0.62 16 27 C -0.28 -2.96 10.80 -40.01 -0.43 -3.40 16 28 C 0.05 0.52 12.03 -17.36 -0.21 0.31 16 29 N -0.29 -4.10 12.57 30.62 0.39 -3.71 16 30 H 0.07 0.67 7.16 -51.93 -0.37 0.30 16 31 H 0.09 0.83 7.56 -51.93 -0.39 0.43 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.40 4.11 5.64 -40.82 -0.23 3.88 16 34 H 0.08 0.93 7.88 -51.93 -0.41 0.53 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.95 7.94 -51.93 -0.41 0.54 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.89 7.70 -51.94 -0.40 0.49 16 39 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 40 H 0.06 0.80 7.56 -51.93 -0.39 0.40 16 41 H 0.08 1.06 6.33 -51.93 -0.33 0.73 16 42 H 0.39 8.79 7.90 -40.82 -0.32 8.47 16 43 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 44 H 0.17 1.50 7.26 -52.48 -0.38 1.12 16 45 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.18 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 385.25 15.07 5.81 5.81 Total: -1.00 -34.82 385.25 -8.04 -42.86 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -6.51 Total: 13.79 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -1.70 Total: 6.05 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.78 Total: -60.41 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.18 Total: -23.37 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.82 -8.04 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733204372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.849 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds