Wall clock time and date at job start Tue Mar 31 2020 18:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47175 * 2 1 4 4 C 1.50702 * 109.47215 * 119.99870 * 2 1 3 5 5 O 1.21281 * 120.00331 * 119.99948 * 4 2 1 6 6 N 1.34776 * 119.99827 * 300.00115 * 4 2 1 7 7 C 1.46502 * 119.99729 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47216 * 179.97438 * 7 6 4 9 9 H 1.09004 * 112.74302 * 284.22850 * 8 7 6 10 10 C 1.53511 * 113.47954 * 153.37746 * 8 7 6 11 11 C 1.53512 * 83.57653 * 219.20800 * 10 8 7 12 12 N 1.47483 * 113.47282 * 54.99631 * 8 7 6 13 13 C 1.46898 * 111.00152 * 253.46876 * 12 8 7 14 14 C 1.50701 * 109.47284 * 190.00331 * 13 12 8 15 15 O 1.21294 * 119.99668 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99721 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99565 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99971 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99993 * 179.97438 * 17 16 14 20 20 N 1.31415 * 119.99697 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00378 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47147 * 89.99607 * 21 19 17 23 23 H 1.48495 * 109.47492 * 209.99943 * 21 19 17 24 24 H 1.48503 * 109.46759 * 330.00209 * 21 19 17 25 25 N 1.46502 * 109.46935 * 239.99780 * 2 1 3 26 26 C 1.34948 * 126.03993 * 324.99535 * 25 2 1 27 27 C 1.35315 * 107.74520 * 179.97438 * 26 25 2 28 28 C 1.39870 * 107.92205 * 0.02562 * 27 26 25 29 29 N 1.30839 * 108.19862 * 359.97438 * 28 27 26 30 30 H 1.09006 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47000 * 299.99871 * 1 2 3 32 32 H 1.08992 * 109.47238 * 60.00089 * 1 2 3 33 33 H 0.96990 * 120.00352 * 0.02562 * 6 4 2 34 34 H 1.09007 * 109.47232 * 299.99888 * 7 6 4 35 35 H 1.08997 * 109.47572 * 59.99795 * 7 6 4 36 36 H 1.08997 * 114.16941 * 332.86068 * 10 8 7 37 37 H 1.09001 * 114.16923 * 105.56326 * 10 8 7 38 38 H 1.08989 * 113.47868 * 271.25606 * 11 10 8 39 39 H 1.09000 * 113.53026 * 140.79671 * 11 10 8 40 40 H 1.08998 * 109.47134 * 310.00716 * 13 12 8 41 41 H 1.09004 * 109.46832 * 70.00205 * 13 12 8 42 42 H 0.97000 * 120.00427 * 359.97438 * 16 14 13 43 43 H 0.97005 * 119.99731 * 179.97438 * 20 19 17 44 44 H 1.08007 * 126.12251 * 0.27272 * 26 25 2 45 45 H 1.08001 * 126.03507 * 180.02562 * 27 26 25 46 46 H 1.07997 * 125.89701 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 6 1.6860 -0.2186 4.9000 9 1 2.2247 0.7074 5.1010 10 6 1.5608 -1.1334 6.1264 11 6 0.2798 -0.3271 6.3822 12 7 0.2196 -0.0642 4.9322 13 6 -0.1693 1.3270 4.6652 14 6 -1.6398 1.5003 4.9458 15 8 -2.2989 0.5576 5.3308 16 7 -2.2224 2.7027 4.7690 17 6 -3.5600 2.8604 5.0248 18 1 -4.1467 2.0213 5.3683 19 6 -4.1607 4.1001 4.8430 20 7 -3.4464 5.1215 4.4264 21 14 -5.9834 4.3150 5.1908 22 1 -6.1735 4.7083 6.6101 23 1 -6.5350 5.3723 4.3060 24 1 -6.6907 3.0349 4.9329 25 7 2.0182 -0.6907 -1.1962 26 6 1.4402 -1.7560 -1.7894 27 6 2.1961 -2.0924 -2.8602 28 6 3.2734 -1.2024 -2.9231 29 7 3.1676 -0.3617 -1.9262 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.1488 0.5385 2.5436 34 1 1.8326 -1.9680 3.6509 35 1 3.2855 -0.9398 3.6506 36 1 1.3875 -2.1821 5.8851 37 1 2.3387 -0.9848 6.8753 38 1 0.4432 0.5696 6.9797 39 1 -0.5495 -0.9323 6.7485 40 1 0.4045 1.9944 5.3083 41 1 0.0321 1.5665 3.6211 42 1 -1.6952 3.4566 4.4615 43 1 -3.8658 5.9869 4.2991 44 1 0.5337 -2.2486 -1.4699 45 1 2.0019 -2.9045 -3.5451 46 1 4.0566 -1.2079 -3.6667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733204372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:07 Heat of formation + Delta-G solvation = 27.258925 kcal Electronic energy + Delta-G solvation = -28886.140308 eV Core-core repulsion = 24813.161360 eV Total energy + Delta-G solvation = -4072.978947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.29677 -41.63013 -40.49200 -39.53187 -35.98271 -35.79758 -35.50417 -33.32423 -32.09546 -31.09853 -30.63452 -29.19883 -27.54369 -25.91768 -25.35754 -24.14130 -22.47231 -21.98555 -21.13331 -21.06982 -20.54243 -19.90486 -18.88099 -18.20136 -17.74975 -17.25586 -16.78829 -16.59616 -16.48430 -16.27560 -15.74299 -15.62472 -15.43080 -15.19233 -14.85018 -14.79708 -14.46912 -14.21497 -13.88683 -13.76208 -13.53368 -13.48208 -13.37643 -13.10704 -12.91676 -12.77216 -12.68260 -12.44401 -12.37265 -12.14238 -11.92709 -11.68046 -11.66174 -11.48627 -11.19680 -10.38885 -10.32731 -10.19922 -10.00500 -9.77918 -9.52285 -8.46675 -5.94454 0.87698 1.34368 1.37122 1.42227 1.42526 1.53604 1.98034 2.04648 2.12809 2.28295 2.80468 3.19685 3.24949 3.39496 3.53200 3.59346 3.75334 3.77596 3.95230 4.03382 4.12890 4.17629 4.26163 4.35137 4.40564 4.46992 4.52517 4.55971 4.63894 4.69442 4.83019 4.86596 4.88047 4.99504 5.02690 5.15676 5.17050 5.26873 5.40095 5.42633 5.74626 5.92070 6.01878 6.09265 6.34652 6.60970 6.75773 7.01006 7.14060 7.57287 8.13370 8.70335 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.002850 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.615282 B = 9822.337788 C =11770.755321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.140 0.860 4 C 0.502 3.498 5 O -0.569 6.569 6 N -0.705 5.705 7 C 0.144 3.856 8 C 0.016 3.984 9 H 0.108 0.892 10 C -0.116 4.116 11 C 0.004 3.996 12 N -0.462 5.462 13 C 0.019 3.981 14 C 0.442 3.558 15 O -0.618 6.618 16 N -0.572 5.572 17 C -0.329 4.329 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.918 5.918 21 Si 0.987 3.013 22 H -0.273 1.273 23 H -0.272 1.272 24 H -0.274 1.274 25 N -0.364 5.364 26 C 0.056 3.944 27 C -0.282 4.282 28 C 0.041 3.959 29 N -0.335 5.335 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.408 0.592 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.189 0.811 45 H 0.170 0.830 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.287 -7.786 -7.467 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.157 0.843 4 C 0.287 3.713 5 O -0.448 6.448 6 N -0.358 5.358 7 C 0.020 3.980 8 C -0.093 4.093 9 H 0.125 0.875 10 C -0.154 4.154 11 C -0.125 4.125 12 N -0.185 5.185 13 C -0.112 4.112 14 C 0.229 3.771 15 O -0.504 6.504 16 N -0.210 5.210 17 C -0.459 4.459 18 H 0.094 0.906 19 C -0.210 4.210 20 N -0.559 5.559 21 Si 0.811 3.189 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.199 1.199 25 N -0.147 5.147 26 C -0.089 4.089 27 C -0.311 4.311 28 C -0.145 4.145 29 N -0.156 5.156 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.246 0.754 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.127 0.873 42 H 0.231 0.769 43 H 0.086 0.914 44 H 0.206 0.794 45 H 0.188 0.812 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 13.303 -8.200 -7.059 17.148 hybrid contribution -1.017 0.877 0.219 1.361 sum 12.286 -7.323 -6.839 15.854 Atomic orbital electron populations 1.22167 0.88585 1.04773 1.05884 1.21233 0.97387 0.97719 0.79959 0.84266 1.21040 0.80099 0.84571 0.85590 1.90727 1.39273 1.27720 1.87110 1.45862 1.52800 1.32229 1.04874 1.21370 0.98810 0.96005 0.81847 1.23841 0.89775 1.00520 0.95193 0.87462 1.23142 0.96872 0.99072 0.96334 1.23609 0.98861 1.00098 0.89949 1.68876 1.12593 1.20260 1.16774 1.22465 0.92590 0.92520 1.03667 1.20676 0.90481 0.82844 0.83066 1.90519 1.66479 1.41159 1.52209 1.41917 1.09368 1.10176 1.59543 1.19585 0.85952 0.96545 1.43835 0.90572 1.25932 1.04060 0.94442 0.96527 1.69654 1.38179 1.01767 1.46306 0.85017 0.77518 0.78000 0.78387 1.19835 1.19635 1.19908 1.48349 1.19605 1.25017 1.21698 1.22942 1.00565 0.90435 0.94958 1.21839 0.98901 1.06797 1.03553 1.24433 0.99821 0.93390 0.96876 1.77264 1.03439 1.26128 1.08766 0.90842 0.88483 0.88935 0.75435 0.92045 0.90221 0.88683 0.87445 0.91089 0.91938 0.89992 0.87332 0.76939 0.91353 0.79440 0.81209 0.77379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 8.73 71.98 0.63 -1.99 16 2 C 0.14 2.99 3.73 44.24 0.17 3.16 16 3 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.50 12.57 7.22 87.66 0.63 13.21 16 5 O -0.57 -19.01 16.42 -3.03 -0.05 -19.06 16 6 N -0.71 -14.73 5.36 -463.05 -2.48 -17.21 16 7 C 0.14 2.91 5.81 86.38 0.50 3.41 16 8 C 0.02 0.30 3.25 42.19 0.14 0.44 16 9 H 0.11 1.58 7.77 -2.39 -0.02 1.56 16 10 C -0.12 -2.05 8.00 30.94 0.25 -1.81 16 11 C 0.00 0.10 6.71 83.57 0.56 0.66 16 12 N -0.46 -12.55 5.63 -906.68 -5.10 -17.65 16 13 C 0.02 0.56 5.07 85.56 0.43 0.99 16 14 C 0.44 19.20 7.62 87.66 0.67 19.87 16 15 O -0.62 -32.28 15.34 -3.07 -0.05 -32.33 16 16 N -0.57 -27.19 5.29 -306.98 -1.62 -28.81 16 17 C -0.33 -17.81 9.68 84.04 0.81 -17.00 16 18 H 0.08 4.45 7.16 -2.91 -0.02 4.43 16 19 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 20 N -0.92 -47.27 13.05 21.66 0.28 -46.99 16 21 Si 0.99 41.48 29.55 68.60 2.03 43.51 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 N -0.36 -9.04 3.02 -331.06 -1.00 -10.04 16 26 C 0.06 1.23 10.58 83.54 0.88 2.12 16 27 C -0.28 -5.65 10.80 21.99 0.24 -5.41 16 28 C 0.04 0.89 12.03 85.24 1.03 1.91 16 29 N -0.34 -9.17 12.57 -57.02 -0.72 -9.88 16 30 H 0.07 1.25 7.16 -2.38 -0.02 1.23 16 31 H 0.10 1.56 7.56 -2.39 -0.02 1.54 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.41 7.45 5.64 -92.72 -0.52 6.92 16 34 H 0.06 1.45 7.88 -2.38 -0.02 1.43 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.72 7.94 -2.39 -0.02 1.71 16 37 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.78 7.70 -2.39 -0.02 1.76 16 39 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 40 H 0.08 2.01 7.56 -2.39 -0.02 1.99 16 41 H 0.11 2.53 6.33 -2.38 -0.02 2.52 16 42 H 0.40 17.69 7.90 -92.71 -0.73 16.96 16 43 H 0.28 13.43 8.31 -92.70 -0.77 12.66 16 44 H 0.19 3.13 7.26 -2.91 -0.02 3.10 16 45 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 46 H 0.21 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -77.21 385.25 -1.54 -78.75 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -0.23 Total: 40.18 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 7.40 Total: 19.53 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -10.64 Total: -130.58 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -0.10 Total: -51.39 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -77.21 -1.54 -78.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733204372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.007 kcal (2) G-P(sol) polarization free energy of solvation -77.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds