Wall clock time and date at job start Tue Mar 31 2020 18:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47247 * 2 1 4 4 C 1.34261 * 125.75216 * 124.99846 * 3 2 1 5 5 C 1.38049 * 107.41488 * 180.02562 * 4 3 2 6 6 C 1.47429 * 126.41211 * 179.97438 * 5 4 3 7 7 O 1.21607 * 120.00384 * 8.21626 * 6 5 4 8 8 N 1.34777 * 119.99607 * 188.22800 * 6 5 4 9 9 C 1.46497 * 120.00523 * 6.48227 * 8 6 5 10 10 C 1.46501 * 119.99610 * 186.48791 * 8 6 5 11 11 C 1.53521 * 114.16791 * 239.99531 * 10 8 6 12 12 N 1.47480 * 87.93064 * 220.33147 * 11 10 8 13 13 C 1.46898 * 111.00083 * 138.70751 * 12 11 10 14 14 C 1.50704 * 109.47153 * 169.99993 * 13 12 11 15 15 O 1.21291 * 120.00075 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99753 * 179.72277 * 14 13 12 17 17 C 1.37100 * 119.99788 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00275 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00013 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00248 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99977 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47075 * 89.99919 * 21 19 17 23 23 H 1.48495 * 109.47418 * 209.99667 * 21 19 17 24 24 H 1.48506 * 109.46948 * 330.00192 * 21 19 17 25 25 C 1.47479 * 87.84033 * 27.00827 * 12 11 10 26 26 C 1.41284 * 107.17070 * 0.22735 * 5 4 3 27 27 N 1.30445 * 108.02270 * 359.61643 * 26 5 4 28 28 H 1.08997 * 109.47137 * 59.99815 * 1 2 3 29 29 H 1.09001 * 109.47005 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46881 * 299.99724 * 1 2 3 31 31 H 1.08997 * 109.46739 * 239.99938 * 2 1 3 32 32 H 1.09005 * 109.47312 * 120.00453 * 2 1 3 33 33 H 1.07993 * 126.29321 * 0.04928 * 4 3 2 34 34 H 1.09001 * 109.46738 * 275.87502 * 9 8 6 35 35 H 1.09001 * 109.46983 * 35.86966 * 9 8 6 36 36 H 1.08990 * 109.47411 * 155.87295 * 9 8 6 37 37 H 1.08993 * 113.38574 * 13.07385 * 10 8 6 38 38 H 1.08996 * 113.47335 * 105.56176 * 11 10 8 39 39 H 1.08993 * 113.53034 * 335.10515 * 11 10 8 40 40 H 1.08998 * 109.47304 * 49.99363 * 13 12 11 41 41 H 1.09003 * 109.46712 * 289.99482 * 13 12 11 42 42 H 0.96998 * 120.00594 * 359.97438 * 16 14 13 43 43 H 0.97002 * 120.00696 * 180.02562 * 20 19 17 44 44 H 1.09000 * 113.47404 * 87.75319 * 25 12 11 45 45 H 1.08995 * 113.47900 * 218.22705 * 25 12 11 46 46 H 1.08001 * 125.98916 * 179.74245 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8691 1.9124 0.8926 5 6 3.0706 3.2311 0.5371 6 6 3.9315 4.2037 1.2346 7 8 4.6627 3.8339 2.1331 8 7 3.9079 5.5028 0.8764 9 6 2.9280 5.9744 -0.1052 10 6 4.8623 6.4433 1.4687 11 6 4.2095 7.5993 2.2396 12 7 5.2300 8.4919 1.6593 13 6 4.6380 9.7726 1.2503 14 6 5.7353 10.7423 0.8941 15 8 6.8963 10.4002 0.9736 16 7 5.4264 11.9878 0.4824 17 6 6.4247 12.8701 0.1588 18 1 7.4585 12.5672 0.2342 19 6 6.1063 14.1541 -0.2662 20 7 7.0630 15.0000 -0.5759 21 14 4.3180 14.6784 -0.3961 22 1 3.8792 15.2650 0.8957 23 1 4.1759 15.6909 -1.4730 24 1 3.4774 13.4962 -0.7139 25 6 5.3154 7.5609 0.5187 26 6 2.2928 3.4756 -0.6167 27 7 1.6764 2.3694 -0.9298 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.3142 1.4019 1.7337 34 1 3.3079 5.7978 -1.1114 35 1 1.9905 5.4347 0.0291 36 1 2.7564 7.0414 0.0364 37 1 5.6767 5.9542 2.0030 38 1 4.2865 7.4975 3.3221 39 1 3.1959 7.8255 1.9087 40 1 4.0469 10.1784 2.0713 41 1 3.9962 9.6158 0.3834 42 1 4.4979 12.2601 0.4149 43 1 6.8408 15.8965 -0.8722 44 1 4.5970 7.7762 -0.2722 45 1 6.3296 7.4265 0.1429 46 1 2.2225 4.4134 -1.1477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733302945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:48 Heat of formation + Delta-G solvation = 81.537497 kcal Electronic energy + Delta-G solvation = -28130.380646 eV Core-core repulsion = 24059.755394 eV Total energy + Delta-G solvation = -4070.625252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.88162 -40.70858 -38.91028 -37.84058 -35.50160 -34.76447 -33.89898 -31.67449 -30.99378 -30.79213 -29.53388 -27.56843 -26.02597 -25.71981 -24.62490 -23.70016 -22.41796 -21.19820 -20.15060 -19.47780 -19.23542 -18.35376 -17.74223 -16.85770 -16.42936 -16.23653 -16.03283 -15.77136 -15.03861 -14.99650 -14.85808 -14.76089 -14.33596 -14.18707 -13.52199 -13.42152 -13.38462 -13.10430 -13.02350 -12.86526 -12.71211 -12.62621 -12.40425 -12.15182 -12.07102 -11.95810 -11.67627 -11.35223 -11.19081 -10.91972 -10.76770 -10.58750 -10.02762 -9.98820 -9.95355 -9.54141 -9.10999 -8.90560 -8.75858 -8.32146 -8.15216 -6.28517 -3.79847 1.16603 1.82131 1.88241 2.72372 3.02267 3.07446 3.15562 3.17657 3.76277 3.86829 4.03549 4.11895 4.29994 4.33986 4.39477 4.42997 4.53201 4.59153 4.70330 4.76261 4.83101 4.93828 5.02962 5.06856 5.14887 5.17398 5.21339 5.24592 5.28277 5.37116 5.50069 5.50964 5.52823 5.72213 5.85450 5.94346 5.98700 6.02619 6.34520 6.38283 6.41808 7.03226 7.12370 7.22397 7.60573 8.04821 8.17112 8.63207 8.98393 9.45117 9.87188 10.84787 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026545 B = 0.001937 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.573493 B =14449.610833 C =15090.639633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.128 3.872 5 C -0.293 4.293 6 C 0.598 3.402 7 O -0.546 6.546 8 N -0.600 5.600 9 C 0.062 3.938 10 C 0.123 3.877 11 C -0.019 4.019 12 N -0.434 5.434 13 C 0.009 3.991 14 C 0.455 3.545 15 O -0.554 6.554 16 N -0.594 5.594 17 C -0.304 4.304 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.882 5.882 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.271 1.271 25 C -0.007 4.007 26 C 0.063 3.937 27 N -0.297 5.297 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.188 0.812 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.369 0.631 43 H 0.273 0.727 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.359 -28.742 0.348 34.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.004 3.996 3 N -0.140 5.140 4 C -0.023 4.023 5 C -0.307 4.307 6 C 0.388 3.612 7 O -0.424 6.424 8 N -0.333 5.333 9 C -0.081 4.081 10 C 0.019 3.981 11 C -0.149 4.149 12 N -0.156 5.156 13 C -0.124 4.124 14 C 0.240 3.760 15 O -0.435 6.435 16 N -0.234 5.234 17 C -0.432 4.432 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.523 5.523 21 Si 0.707 3.293 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.136 4.136 26 C -0.124 4.124 27 N -0.116 5.116 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.205 0.795 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.151 0.849 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.202 0.798 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.115 0.885 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.374 -29.455 0.347 34.199 hybrid contribution -1.694 1.100 -0.197 2.030 sum -19.068 -28.355 0.150 34.170 Atomic orbital electron populations 1.22061 0.93316 1.03194 1.03804 1.21851 0.96494 0.76859 1.04370 1.48694 1.34189 1.10675 1.20454 1.22996 0.91460 0.93503 0.94370 1.20224 1.11627 0.95280 1.03617 1.17264 0.81174 0.81080 0.81722 1.90778 1.41998 1.78935 1.30662 1.47519 1.34645 1.07760 1.43327 1.22329 0.92293 1.01387 0.92100 1.22767 0.92449 0.87576 0.95345 1.24413 0.95623 0.92769 1.02110 1.68778 1.31582 0.99261 1.15964 1.22531 0.96557 0.92672 1.00606 1.19548 0.89818 0.82799 0.83791 1.90576 1.20100 1.76957 1.55834 1.42211 1.08084 1.11897 1.61254 1.19430 0.90574 0.91814 1.41408 0.86302 1.25029 0.97866 0.95769 0.97541 1.69618 1.31736 1.06381 1.44540 0.86671 0.84683 0.79105 0.78883 1.19651 1.20232 1.19613 1.24401 1.03493 0.91354 0.94398 1.25022 0.94074 0.97829 0.95443 1.77181 1.24227 0.96968 1.13258 0.90880 0.90397 0.91934 0.89200 0.88180 0.79538 0.91698 0.89942 0.90611 0.84856 0.88977 0.91222 0.89134 0.92232 0.79833 0.91662 0.90908 0.88548 0.77871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.09 37.16 0.37 -0.20 16 2 C 0.12 0.46 7.21 -4.04 -0.03 0.43 16 3 N -0.36 -2.67 3.65 -60.81 -0.22 -2.89 16 4 C 0.13 1.04 11.26 -16.56 -0.19 0.85 16 5 C -0.29 -2.85 5.92 -105.07 -0.62 -3.47 16 6 C 0.60 7.17 7.65 -12.52 -0.10 7.08 16 7 O -0.55 -8.36 16.47 5.27 0.09 -8.27 16 8 N -0.60 -6.28 3.11 -174.89 -0.54 -6.82 16 9 C 0.06 0.43 7.44 59.85 0.45 0.87 16 10 C 0.12 1.51 4.52 -67.71 -0.31 1.20 16 11 C -0.02 -0.23 7.23 -7.53 -0.05 -0.28 16 12 N -0.43 -6.93 5.82 -246.07 -1.43 -8.36 16 13 C 0.01 0.14 5.30 -4.97 -0.03 0.12 16 14 C 0.46 10.46 7.85 -10.99 -0.09 10.38 16 15 O -0.55 -15.29 16.01 5.55 0.09 -15.20 16 16 N -0.59 -14.21 5.09 -10.96 -0.06 -14.26 16 17 C -0.30 -8.65 10.16 -14.93 -0.15 -8.81 16 18 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -25.93 13.96 55.50 0.77 -25.15 16 21 Si 0.88 19.34 27.74 -169.99 -4.71 14.62 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 25 C -0.01 -0.09 7.11 -7.53 -0.05 -0.15 16 26 C 0.06 0.53 9.87 -16.98 -0.17 0.36 16 27 N -0.30 -2.72 12.33 30.86 0.38 -2.34 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.13 8.06 -51.93 -0.42 -0.29 16 33 H 0.19 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.06 0.37 7.27 -51.93 -0.38 -0.01 16 35 H 0.08 0.47 5.43 -51.93 -0.28 0.18 16 36 H 0.08 0.49 5.96 -51.93 -0.31 0.18 16 37 H 0.13 1.88 7.35 -51.93 -0.38 1.49 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.70 6.83 -51.93 -0.35 0.35 16 40 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 41 H 0.06 0.81 7.30 -51.93 -0.38 0.43 16 42 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.07 0.85 5.71 -51.93 -0.30 0.55 16 45 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 46 H 0.21 1.18 4.52 -52.49 -0.24 0.95 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -38.04 376.87 -7.22 -45.26 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.21 Total: 8.33 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -1.06 Total: 9.41 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -1.10 Total: -59.83 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.18 Total: -23.47 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.04 -7.22 -45.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733302945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.801 kcal (2) G-P(sol) polarization free energy of solvation -38.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds