Wall clock time and date at job start Tue Mar 31 2020 18:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47247 * 2 1 4 4 C 1.34261 * 125.75216 * 124.99846 * 3 2 1 5 5 C 1.38049 * 107.41488 * 180.02562 * 4 3 2 6 6 C 1.47429 * 126.41211 * 179.97438 * 5 4 3 7 7 O 1.21607 * 120.00384 * 8.21626 * 6 5 4 8 8 N 1.34777 * 119.99607 * 188.22800 * 6 5 4 9 9 C 1.46497 * 120.00523 * 6.48227 * 8 6 5 10 10 C 1.46501 * 119.99610 * 186.48791 * 8 6 5 11 11 C 1.53521 * 114.16791 * 239.99531 * 10 8 6 12 12 N 1.47480 * 87.93064 * 220.33147 * 11 10 8 13 13 C 1.46898 * 111.00083 * 138.70751 * 12 11 10 14 14 C 1.50704 * 109.47153 * 169.99993 * 13 12 11 15 15 O 1.21291 * 120.00075 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99753 * 179.72277 * 14 13 12 17 17 C 1.37100 * 119.99788 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00275 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00013 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00248 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99977 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47075 * 89.99919 * 21 19 17 23 23 H 1.48495 * 109.47418 * 209.99667 * 21 19 17 24 24 H 1.48506 * 109.46948 * 330.00192 * 21 19 17 25 25 C 1.47479 * 87.84033 * 27.00827 * 12 11 10 26 26 C 1.41284 * 107.17070 * 0.22735 * 5 4 3 27 27 N 1.30445 * 108.02270 * 359.61643 * 26 5 4 28 28 H 1.08997 * 109.47137 * 59.99815 * 1 2 3 29 29 H 1.09001 * 109.47005 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46881 * 299.99724 * 1 2 3 31 31 H 1.08997 * 109.46739 * 239.99938 * 2 1 3 32 32 H 1.09005 * 109.47312 * 120.00453 * 2 1 3 33 33 H 1.07993 * 126.29321 * 0.04928 * 4 3 2 34 34 H 1.09001 * 109.46738 * 275.87502 * 9 8 6 35 35 H 1.09001 * 109.46983 * 35.86966 * 9 8 6 36 36 H 1.08990 * 109.47411 * 155.87295 * 9 8 6 37 37 H 1.08993 * 113.38574 * 13.07385 * 10 8 6 38 38 H 1.08996 * 113.47335 * 105.56176 * 11 10 8 39 39 H 1.08993 * 113.53034 * 335.10515 * 11 10 8 40 40 H 1.08998 * 109.47304 * 49.99363 * 13 12 11 41 41 H 1.09003 * 109.46712 * 289.99482 * 13 12 11 42 42 H 0.96998 * 120.00594 * 359.97438 * 16 14 13 43 43 H 0.97002 * 120.00696 * 180.02562 * 20 19 17 44 44 H 1.09000 * 113.47404 * 87.75319 * 25 12 11 45 45 H 1.08995 * 113.47900 * 218.22705 * 25 12 11 46 46 H 1.08001 * 125.98916 * 179.74245 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8691 1.9124 0.8926 5 6 3.0706 3.2311 0.5371 6 6 3.9315 4.2037 1.2346 7 8 4.6627 3.8339 2.1331 8 7 3.9079 5.5028 0.8764 9 6 2.9280 5.9744 -0.1052 10 6 4.8623 6.4433 1.4687 11 6 4.2095 7.5993 2.2396 12 7 5.2300 8.4919 1.6593 13 6 4.6380 9.7726 1.2503 14 6 5.7353 10.7423 0.8941 15 8 6.8963 10.4002 0.9736 16 7 5.4264 11.9878 0.4824 17 6 6.4247 12.8701 0.1588 18 1 7.4585 12.5672 0.2342 19 6 6.1063 14.1541 -0.2662 20 7 7.0630 15.0000 -0.5759 21 14 4.3180 14.6784 -0.3961 22 1 3.8792 15.2650 0.8957 23 1 4.1759 15.6909 -1.4730 24 1 3.4774 13.4962 -0.7139 25 6 5.3154 7.5609 0.5187 26 6 2.2928 3.4756 -0.6167 27 7 1.6764 2.3694 -0.9298 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.3142 1.4019 1.7337 34 1 3.3079 5.7978 -1.1114 35 1 1.9905 5.4347 0.0291 36 1 2.7564 7.0414 0.0364 37 1 5.6767 5.9542 2.0030 38 1 4.2865 7.4975 3.3221 39 1 3.1959 7.8255 1.9087 40 1 4.0469 10.1784 2.0713 41 1 3.9962 9.6158 0.3834 42 1 4.4979 12.2601 0.4149 43 1 6.8408 15.8965 -0.8722 44 1 4.5970 7.7762 -0.2722 45 1 6.3296 7.4265 0.1429 46 1 2.2225 4.4134 -1.1477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733302945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:47 Heat of formation + Delta-G solvation = 49.543127 kcal Electronic energy + Delta-G solvation = -28131.768026 eV Core-core repulsion = 24059.755394 eV Total energy + Delta-G solvation = -4072.012632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.52529 -41.71210 -40.16026 -39.37125 -36.31772 -35.93022 -35.26593 -33.74312 -31.84650 -31.55129 -30.33755 -28.29460 -27.39569 -26.87795 -25.59581 -24.63354 -23.30977 -21.74231 -21.29046 -20.94243 -20.37625 -20.05718 -18.39495 -17.87506 -17.72044 -17.15392 -16.95961 -16.70456 -16.57447 -15.98422 -15.86302 -15.61661 -15.44243 -15.14486 -14.80903 -14.64110 -14.43771 -14.09510 -14.05152 -13.88942 -13.68223 -13.58468 -13.38939 -13.06464 -13.01156 -12.79283 -12.54124 -12.42452 -12.39532 -12.03689 -11.94118 -11.87754 -11.84870 -11.48680 -10.90039 -10.57345 -10.44940 -10.22579 -9.82895 -9.76921 -9.52599 -8.39178 -6.00443 0.52042 1.16671 1.31162 1.38106 1.40928 1.46700 1.91728 1.99405 2.25310 2.38172 2.72760 3.16118 3.28225 3.43000 3.49279 3.70397 3.80093 3.93463 4.02954 4.08414 4.09878 4.14673 4.23383 4.29930 4.35758 4.36095 4.42492 4.46767 4.56049 4.65013 4.73681 4.80639 4.80849 4.87844 4.92286 5.00769 5.21885 5.32608 5.39177 5.51243 5.57022 5.88765 5.91795 6.02714 6.39640 6.55557 6.62186 6.91027 7.19380 7.42427 8.01401 8.78750 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026545 B = 0.001937 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.573493 B =14449.610833 C =15090.639633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.114 3.886 3 N -0.357 5.357 4 C 0.132 3.868 5 C -0.316 4.316 6 C 0.594 3.406 7 O -0.591 6.591 8 N -0.596 5.596 9 C 0.052 3.948 10 C 0.130 3.870 11 C -0.003 4.003 12 N -0.477 5.477 13 C 0.022 3.978 14 C 0.451 3.549 15 O -0.612 6.612 16 N -0.592 5.592 17 C -0.329 4.329 18 H 0.051 0.949 19 C -0.017 4.017 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.258 1.258 23 H -0.276 1.276 24 H -0.226 1.226 25 C -0.004 4.004 26 C 0.069 3.931 27 N -0.321 5.321 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.204 0.796 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.390 0.610 43 H 0.279 0.721 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.248 -29.857 -0.119 37.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.135 5.135 4 C -0.022 4.022 5 C -0.331 4.331 6 C 0.385 3.615 7 O -0.473 6.473 8 N -0.327 5.327 9 C -0.090 4.090 10 C 0.025 3.975 11 C -0.133 4.133 12 N -0.200 5.200 13 C -0.110 4.110 14 C 0.239 3.761 15 O -0.495 6.495 16 N -0.234 5.234 17 C -0.459 4.459 18 H 0.069 0.931 19 C -0.215 4.215 20 N -0.577 5.577 21 Si 0.787 3.213 22 H -0.183 1.183 23 H -0.201 1.201 24 H -0.150 1.150 25 C -0.134 4.134 26 C -0.117 4.117 27 N -0.141 5.141 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.221 0.779 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.226 0.774 43 H 0.088 0.912 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -22.317 -30.601 -0.146 37.875 hybrid contribution -0.037 1.327 -0.048 1.328 sum -22.354 -29.274 -0.194 36.833 Atomic orbital electron populations 1.22017 0.93105 1.04234 1.02445 1.22241 0.96676 0.75320 1.06209 1.49008 1.33469 1.11490 1.19574 1.23324 0.90949 0.93294 0.94587 1.20163 1.12651 0.95616 1.04675 1.17621 0.80843 0.81725 0.81268 1.90749 1.43999 1.79738 1.32814 1.47526 1.34567 1.07029 1.43551 1.22640 0.92062 1.02396 0.91861 1.22373 0.92470 0.87666 0.94978 1.24389 0.96240 0.90790 1.01855 1.68693 1.33959 0.99879 1.17473 1.22478 0.94040 0.91072 1.03363 1.20935 0.90868 0.83071 0.81237 1.90555 1.23394 1.78066 1.57530 1.42015 1.08011 1.11743 1.61657 1.18991 0.89224 0.93800 1.43843 0.93080 1.26159 1.04711 0.94803 0.95862 1.69813 1.35456 1.07124 1.45347 0.85332 0.76692 0.79954 0.79306 1.18276 1.20112 1.14953 1.24420 1.02684 0.91436 0.94831 1.25346 0.93092 0.98490 0.94813 1.77148 1.25035 0.97617 1.14281 0.92665 0.88179 0.92740 0.88354 0.85411 0.77882 0.90169 0.88323 0.89185 0.87669 0.89182 0.87824 0.86091 0.88063 0.77403 0.91191 0.88080 0.91570 0.75752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 10.09 71.98 0.73 -0.08 16 2 C 0.11 0.59 7.21 86.38 0.62 1.21 16 3 N -0.36 -4.62 3.65 -346.30 -1.26 -5.89 16 4 C 0.13 1.94 11.26 84.28 0.95 2.88 16 5 C -0.32 -5.73 5.92 -20.15 -0.12 -5.85 16 6 C 0.59 13.85 7.65 86.66 0.66 14.51 16 7 O -0.59 -18.47 16.47 -4.05 -0.07 -18.54 16 8 N -0.60 -11.41 3.11 -825.47 -2.57 -13.98 16 9 C 0.05 0.53 7.44 127.77 0.95 1.48 16 10 C 0.13 3.09 4.52 45.45 0.21 3.30 16 11 C 0.00 -0.07 7.23 83.58 0.60 0.53 16 12 N -0.48 -14.50 5.82 -932.43 -5.43 -19.93 16 13 C 0.02 0.65 5.30 85.56 0.45 1.11 16 14 C 0.45 20.58 7.85 87.66 0.69 21.27 16 15 O -0.61 -35.25 16.01 -3.06 -0.05 -35.30 16 16 N -0.59 -27.82 5.09 -306.99 -1.56 -29.39 16 17 C -0.33 -19.49 10.16 84.04 0.85 -18.63 16 18 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 19 C -0.02 -0.95 5.50 84.93 0.47 -0.49 16 20 N -0.94 -56.91 13.96 21.66 0.30 -56.61 16 21 Si 0.97 38.30 27.74 68.60 1.90 40.21 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.23 -7.31 6.52 99.48 0.65 -6.66 16 25 C 0.00 -0.11 7.11 83.58 0.59 0.49 16 26 C 0.07 1.01 9.87 85.65 0.85 1.86 16 27 N -0.32 -5.31 12.33 -56.28 -0.69 -6.00 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.10 0.37 8.14 -2.39 -0.02 0.36 16 32 H 0.13 -0.05 8.06 -2.38 -0.02 -0.07 16 33 H 0.20 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.08 0.62 7.27 -2.39 -0.02 0.60 16 35 H 0.10 0.74 5.43 -2.39 -0.01 0.73 16 36 H 0.09 0.70 5.96 -2.39 -0.01 0.68 16 37 H 0.11 3.11 7.35 -2.39 -0.02 3.09 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.10 1.55 6.83 -2.39 -0.02 1.53 16 40 H 0.12 2.88 8.08 -2.39 -0.02 2.86 16 41 H 0.10 2.18 7.30 -2.39 -0.02 2.16 16 42 H 0.39 14.82 5.76 -92.71 -0.53 14.29 16 43 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.10 2.01 5.71 -2.39 -0.01 2.00 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.23 1.93 4.52 -2.91 -0.01 1.91 16 Total: -1.00 -91.76 376.87 -0.49 -92.25 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.44 Total: 29.58 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 8.50 Total: 23.59 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -11.21 Total: -131.79 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -0.12 Total: -53.84 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 1.90 Total: 40.21 kcal Total: -91.76 -0.49 -92.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733302945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.796 kcal (2) G-P(sol) polarization free energy of solvation -91.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds