Wall clock time and date at job start Tue Mar 31 2020 18:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47406 * 2 1 4 4 N 1.46903 * 109.47063 * 240.00045 * 2 1 3 5 5 C 1.46900 * 110.99925 * 84.99802 * 4 2 1 6 6 C 1.50697 * 109.47263 * 180.02562 * 5 4 2 7 7 O 1.21294 * 120.00279 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99960 * 180.02562 * 6 5 4 9 9 C 1.37101 * 119.99837 * 179.97438 * 8 6 5 10 10 H 1.07992 * 120.00300 * 359.97438 * 9 8 6 11 11 C 1.38949 * 119.99804 * 179.97438 * 9 8 6 12 12 N 1.31413 * 120.00249 * 0.02562 * 11 9 8 13 13 Si 1.86812 * 119.99887 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46556 * 90.00310 * 13 11 9 15 15 H 1.48498 * 109.46920 * 210.00105 * 13 11 9 16 16 H 1.48500 * 109.46782 * 330.00128 * 13 11 9 17 17 C 1.52995 * 109.47345 * 120.00372 * 2 1 3 18 18 H 1.09005 * 110.91766 * 60.91585 * 17 2 1 19 19 C 1.55154 * 111.00619 * 184.81533 * 17 2 1 20 20 C 1.54325 * 103.10503 * 153.66275 * 19 17 2 21 21 N 1.47019 * 107.26888 * 337.72299 * 20 19 17 22 22 C 1.34779 * 125.64789 * 178.97303 * 21 20 19 23 23 O 1.21609 * 119.99900 * 179.97438 * 22 21 20 24 24 C 1.47409 * 120.00022 * 359.97438 * 22 21 20 25 25 N 1.31606 * 125.86537 * 0.02562 * 24 22 21 26 26 C 1.33102 * 109.09832 * 179.97438 * 25 24 22 27 27 C 1.35560 * 108.34572 * 0.02562 * 26 25 24 28 28 N 1.35402 * 107.16500 * 359.76712 * 27 26 25 29 29 H 0.96996 * 126.43897 * 180.22528 * 28 27 26 30 30 C 1.47429 * 108.70645 * 358.93831 * 21 20 19 31 31 H 1.09002 * 109.47101 * 305.27741 * 1 2 3 32 32 H 1.09000 * 109.47144 * 65.27926 * 1 2 3 33 33 H 1.09002 * 109.47357 * 185.27969 * 1 2 3 34 34 H 1.00891 * 111.00386 * 208.95302 * 4 2 1 35 35 H 1.09000 * 109.47455 * 300.00442 * 5 4 2 36 36 H 1.09000 * 109.47135 * 60.00326 * 5 4 2 37 37 H 0.97000 * 120.00436 * 359.97438 * 8 6 5 38 38 H 0.97001 * 120.00060 * 179.97438 * 12 11 9 39 39 H 1.09005 * 110.71862 * 35.21297 * 19 17 2 40 40 H 1.08997 * 110.72526 * 272.11719 * 19 17 2 41 41 H 1.09000 * 109.88298 * 97.13315 * 20 19 17 42 42 H 1.08998 * 109.88522 * 218.30170 * 20 19 17 43 43 H 1.08000 * 125.82436 * 179.97438 * 26 25 24 44 44 H 1.08004 * 126.41574 * 179.97438 * 27 26 25 45 45 H 1.08998 * 110.36833 * 142.96785 * 30 21 20 46 46 H 1.08998 * 110.36457 * 265.18356 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5872 -0.5217 -3.5561 7 8 2.8677 -1.6987 -3.4704 8 7 2.7280 0.1206 -4.7325 9 6 3.1878 -0.5565 -5.8324 10 1 3.4375 -1.6044 -5.7561 11 6 3.3325 0.1056 -7.0455 12 7 3.0292 1.3809 -7.1383 13 14 3.9597 -0.8168 -8.5440 14 1 2.8111 -1.3998 -9.2828 15 1 4.6941 0.1210 -9.4309 16 1 4.8725 -1.9046 -8.1094 17 6 2.0400 -0.7213 1.2491 18 1 1.7031 -1.7579 1.2648 19 6 3.5862 -0.6376 1.3473 20 6 3.8477 -0.7608 2.8633 21 7 2.6119 -0.3627 3.5531 22 6 2.4259 -0.3523 4.8880 23 8 1.3570 -0.0020 5.3502 24 6 3.5181 -0.7655 5.7876 25 7 4.7157 -1.1633 5.4143 26 6 5.4347 -1.4547 6.4959 27 6 4.6664 -1.2345 7.5909 28 7 3.4624 -0.7967 7.1528 29 1 2.7026 -0.5528 7.7042 30 6 1.6101 0.0241 2.5430 31 1 -0.3633 0.5935 0.8390 32 1 -0.3633 0.4298 -0.9335 33 1 -0.3634 -1.0233 0.0946 34 1 2.9172 -1.1205 -1.0289 35 1 1.0870 0.6164 -2.5525 36 1 2.7588 1.0462 -2.1183 37 1 2.5041 1.0619 -4.8011 38 1 3.1306 1.8431 -7.9850 39 1 3.9452 0.3202 0.9707 40 1 4.0521 -1.4618 0.8074 41 1 4.0963 -1.7920 3.1140 42 1 4.6639 -0.0994 3.1537 43 1 6.4555 -1.8071 6.5003 44 1 4.9609 -1.3780 8.6200 45 1 0.6156 -0.2969 2.8527 46 1 1.6278 1.1024 2.3848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733528011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:29 Heat of formation + Delta-G solvation = -5.240436 kcal Electronic energy + Delta-G solvation = -28088.694321 eV Core-core repulsion = 24014.306096 eV Total energy + Delta-G solvation = -4074.388225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.64570 -40.19952 -38.57959 -37.88475 -35.88162 -33.90423 -33.22982 -32.07414 -31.18562 -30.51816 -30.18063 -28.07930 -26.63217 -25.10852 -23.96118 -22.49853 -22.07873 -21.81432 -20.40642 -20.14073 -19.18653 -18.42502 -17.86336 -17.02878 -16.86964 -16.12497 -15.80490 -15.34149 -15.12726 -15.02147 -14.46915 -14.44354 -14.20400 -14.11560 -13.91751 -13.62758 -13.54918 -13.14511 -12.98372 -12.75152 -12.51168 -12.27717 -11.90884 -11.81147 -11.54179 -11.26587 -11.05589 -11.02327 -10.92451 -10.73798 -10.66974 -10.57919 -10.46748 -10.38142 -10.20022 -9.49202 -9.17011 -8.86911 -8.42547 -8.04943 -7.93999 -6.40081 -3.80816 0.94294 2.08123 2.19058 2.99871 3.02681 3.19290 3.27772 3.33604 3.78641 3.92658 4.03041 4.23879 4.34379 4.43194 4.53283 4.73546 4.78953 4.91787 5.08283 5.09548 5.12085 5.26334 5.28217 5.35501 5.41223 5.47723 5.54760 5.71414 5.73619 5.77072 5.83977 5.87107 5.94396 6.00382 6.05414 6.12138 6.16242 6.27707 6.40913 6.64283 7.06414 7.26499 7.30571 7.56854 7.70300 7.72148 8.08290 8.63163 9.19696 9.56351 10.07830 10.77649 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025606 B = 0.001856 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.248079 B =15079.866735 C =15829.220184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.096 3.904 3 H 0.045 0.955 4 N -0.663 5.663 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.583 6.583 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.100 4.100 18 H 0.097 0.903 19 C -0.139 4.139 20 C 0.114 3.886 21 N -0.593 5.593 22 C 0.618 3.382 23 O -0.546 6.546 24 C 0.147 3.853 25 N -0.437 5.437 26 C -0.029 4.029 27 C -0.024 4.024 28 N -0.526 5.526 29 H 0.430 0.570 30 C 0.116 3.884 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.350 0.650 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.180 0.820 44 H 0.187 0.813 45 H 0.084 0.916 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.502 -0.091 28.458 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.014 4.014 3 H 0.063 0.937 4 N -0.297 5.297 5 C -0.082 4.082 6 C 0.227 3.773 7 O -0.467 6.467 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.194 1.194 17 C -0.120 4.120 18 H 0.116 0.884 19 C -0.177 4.177 20 C -0.009 4.009 21 N -0.325 5.325 22 C 0.405 3.595 23 O -0.424 6.424 24 C -0.114 4.114 25 N -0.159 5.159 26 C -0.182 4.182 27 C -0.163 4.163 28 N -0.128 5.128 29 H 0.269 0.731 30 C -0.006 4.006 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.170 0.830 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.197 0.803 44 H 0.204 0.796 45 H 0.102 0.898 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.756 -0.860 27.624 27.648 hybrid contribution 0.496 0.922 0.568 1.191 sum 1.251 0.061 28.192 28.220 Atomic orbital electron populations 1.21848 0.94399 1.02396 1.01449 1.21437 0.96156 0.95451 0.88398 0.93669 1.60131 1.34917 1.32051 1.02555 1.21719 1.01282 0.93889 0.91302 1.19819 0.84874 0.88195 0.84447 1.90522 1.55277 1.16139 1.84776 1.41869 1.57815 1.12422 1.08002 1.19702 1.39878 0.96439 0.86813 0.87921 1.25262 0.97713 0.95775 0.99233 1.69613 1.48777 1.08832 1.27126 0.85859 0.78873 0.78939 0.80621 1.20412 1.20969 1.19429 1.22646 0.95152 1.01136 0.93048 0.88436 1.22863 0.95938 1.03764 0.95117 1.22156 0.85919 1.01849 0.90930 1.48044 1.16241 1.64223 1.03944 1.16004 0.84686 0.78259 0.80596 1.90851 1.26066 1.49945 1.75508 1.22540 0.95800 1.10732 0.82285 1.70367 1.01201 1.13439 1.30913 1.22585 1.01223 1.07079 0.87325 1.23027 0.85963 1.05686 1.01621 1.42948 1.14201 1.48074 1.07538 0.73050 1.22428 0.92398 0.99503 0.86268 0.92801 0.92246 0.91877 0.82956 0.89601 0.93904 0.77476 0.91904 0.90442 0.89050 0.90083 0.90341 0.80320 0.79588 0.89763 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.17 37.16 0.34 -1.25 16 2 C 0.10 1.11 2.17 -67.72 -0.15 0.97 16 3 H 0.05 0.51 7.79 -51.93 -0.40 0.10 16 4 N -0.66 -10.24 5.93 -108.00 -0.64 -10.88 16 5 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 6 C 0.44 10.33 7.82 -10.99 -0.09 10.24 16 7 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 8 N -0.56 -14.26 5.29 -10.97 -0.06 -14.32 16 9 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 10 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 13 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C -0.10 -1.01 2.70 -88.22 -0.24 -1.25 16 18 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 19 C -0.14 -1.31 5.56 -24.90 -0.14 -1.45 16 20 C 0.11 1.10 5.53 -3.07 -0.02 1.08 16 21 N -0.59 -6.42 3.33 -171.49 -0.57 -7.00 16 22 C 0.62 7.42 7.85 -12.53 -0.10 7.32 16 23 O -0.55 -7.70 17.35 5.27 0.09 -7.61 16 24 C 0.15 1.52 7.81 -154.52 -1.21 0.31 16 25 N -0.44 -4.40 8.67 -11.26 -0.10 -4.49 16 26 C -0.03 -0.21 11.85 -17.96 -0.21 -0.42 16 27 C -0.02 -0.13 12.00 -16.93 -0.20 -0.33 16 28 N -0.53 -3.76 6.14 -10.78 -0.07 -3.82 16 29 H 0.43 2.21 8.96 -40.82 -0.37 1.84 16 30 C 0.12 1.17 5.52 -2.27 -0.01 1.15 16 31 H 0.05 0.50 7.59 -51.93 -0.39 0.10 16 32 H 0.06 0.71 7.35 -51.93 -0.38 0.33 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.35 5.52 6.91 -39.30 -0.27 5.25 16 35 H 0.09 1.39 7.36 -51.93 -0.38 1.01 16 36 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 37 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.08 0.72 8.03 -51.93 -0.42 0.31 16 40 H 0.09 0.87 7.77 -51.93 -0.40 0.46 16 41 H 0.08 0.81 7.63 -51.93 -0.40 0.42 16 42 H 0.08 0.77 7.75 -51.93 -0.40 0.36 16 43 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.19 0.23 8.06 -52.48 -0.42 -0.19 16 45 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 46 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -34.52 382.57 -8.67 -43.20 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -6.60 Total: 13.32 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -2.29 Total: 9.23 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.71 Total: -64.32 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.18 Total: -23.24 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.52 -8.67 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733528011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.955 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds