Wall clock time and date at job start Tue Mar 31 2020 18:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47406 * 2 1 4 4 N 1.46903 * 109.47063 * 240.00045 * 2 1 3 5 5 C 1.46900 * 110.99925 * 84.99802 * 4 2 1 6 6 C 1.50697 * 109.47263 * 180.02562 * 5 4 2 7 7 O 1.21294 * 120.00279 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99960 * 180.02562 * 6 5 4 9 9 C 1.37101 * 119.99837 * 179.97438 * 8 6 5 10 10 H 1.07992 * 120.00300 * 359.97438 * 9 8 6 11 11 C 1.38949 * 119.99804 * 179.97438 * 9 8 6 12 12 N 1.31413 * 120.00249 * 0.02562 * 11 9 8 13 13 Si 1.86812 * 119.99887 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46556 * 90.00310 * 13 11 9 15 15 H 1.48498 * 109.46920 * 210.00105 * 13 11 9 16 16 H 1.48500 * 109.46782 * 330.00128 * 13 11 9 17 17 C 1.52995 * 109.47345 * 120.00372 * 2 1 3 18 18 H 1.09005 * 110.91766 * 60.91585 * 17 2 1 19 19 C 1.55154 * 111.00619 * 184.81533 * 17 2 1 20 20 C 1.54325 * 103.10503 * 153.66275 * 19 17 2 21 21 N 1.47019 * 107.26888 * 337.72299 * 20 19 17 22 22 C 1.34779 * 125.64789 * 178.97303 * 21 20 19 23 23 O 1.21609 * 119.99900 * 179.97438 * 22 21 20 24 24 C 1.47409 * 120.00022 * 359.97438 * 22 21 20 25 25 N 1.31606 * 125.86537 * 0.02562 * 24 22 21 26 26 C 1.33102 * 109.09832 * 179.97438 * 25 24 22 27 27 C 1.35560 * 108.34572 * 0.02562 * 26 25 24 28 28 N 1.35402 * 107.16500 * 359.76712 * 27 26 25 29 29 H 0.96996 * 126.43897 * 180.22528 * 28 27 26 30 30 C 1.47429 * 108.70645 * 358.93831 * 21 20 19 31 31 H 1.09002 * 109.47101 * 305.27741 * 1 2 3 32 32 H 1.09000 * 109.47144 * 65.27926 * 1 2 3 33 33 H 1.09002 * 109.47357 * 185.27969 * 1 2 3 34 34 H 1.00891 * 111.00386 * 208.95302 * 4 2 1 35 35 H 1.09000 * 109.47455 * 300.00442 * 5 4 2 36 36 H 1.09000 * 109.47135 * 60.00326 * 5 4 2 37 37 H 0.97000 * 120.00436 * 359.97438 * 8 6 5 38 38 H 0.97001 * 120.00060 * 179.97438 * 12 11 9 39 39 H 1.09005 * 110.71862 * 35.21297 * 19 17 2 40 40 H 1.08997 * 110.72526 * 272.11719 * 19 17 2 41 41 H 1.09000 * 109.88298 * 97.13315 * 20 19 17 42 42 H 1.08998 * 109.88522 * 218.30170 * 20 19 17 43 43 H 1.08000 * 125.82436 * 179.97438 * 26 25 24 44 44 H 1.08004 * 126.41574 * 179.97438 * 27 26 25 45 45 H 1.08998 * 110.36833 * 142.96785 * 30 21 20 46 46 H 1.08998 * 110.36457 * 265.18356 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5872 -0.5217 -3.5561 7 8 2.8677 -1.6987 -3.4704 8 7 2.7280 0.1206 -4.7325 9 6 3.1878 -0.5565 -5.8324 10 1 3.4375 -1.6044 -5.7561 11 6 3.3325 0.1056 -7.0455 12 7 3.0292 1.3809 -7.1383 13 14 3.9597 -0.8168 -8.5440 14 1 2.8111 -1.3998 -9.2828 15 1 4.6941 0.1210 -9.4309 16 1 4.8725 -1.9046 -8.1094 17 6 2.0400 -0.7213 1.2491 18 1 1.7031 -1.7579 1.2648 19 6 3.5862 -0.6376 1.3473 20 6 3.8477 -0.7608 2.8633 21 7 2.6119 -0.3627 3.5531 22 6 2.4259 -0.3523 4.8880 23 8 1.3570 -0.0020 5.3502 24 6 3.5181 -0.7655 5.7876 25 7 4.7157 -1.1633 5.4143 26 6 5.4347 -1.4547 6.4959 27 6 4.6664 -1.2345 7.5909 28 7 3.4624 -0.7967 7.1528 29 1 2.7026 -0.5528 7.7042 30 6 1.6101 0.0241 2.5430 31 1 -0.3633 0.5935 0.8390 32 1 -0.3633 0.4298 -0.9335 33 1 -0.3634 -1.0233 0.0946 34 1 2.9172 -1.1205 -1.0289 35 1 1.0870 0.6164 -2.5525 36 1 2.7588 1.0462 -2.1183 37 1 2.5041 1.0619 -4.8011 38 1 3.1306 1.8431 -7.9850 39 1 3.9452 0.3202 0.9707 40 1 4.0521 -1.4618 0.8074 41 1 4.0963 -1.7920 3.1140 42 1 4.6639 -0.0994 3.1537 43 1 6.4555 -1.8071 6.5003 44 1 4.9609 -1.3780 8.6200 45 1 0.6156 -0.2969 2.8527 46 1 1.6278 1.1024 2.3848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733528011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:28 Heat of formation + Delta-G solvation = -31.335784 kcal Electronic energy + Delta-G solvation = -28089.825901 eV Core-core repulsion = 24014.306096 eV Total energy + Delta-G solvation = -4075.519804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.22568 -41.05899 -40.15053 -39.08759 -37.01150 -35.88256 -33.89779 -33.31643 -32.95265 -31.45757 -30.83286 -28.95504 -28.10781 -26.35105 -25.33591 -23.26645 -22.92107 -22.42644 -21.21848 -21.08956 -20.83614 -19.87450 -19.13968 -18.10527 -17.75778 -17.27954 -16.88176 -16.68717 -16.35066 -16.11144 -15.93210 -15.53894 -15.24247 -14.94805 -14.92673 -14.65018 -14.61975 -14.25780 -14.03726 -13.80653 -13.59797 -13.47233 -13.30054 -13.26106 -12.92488 -12.81862 -12.39957 -12.24823 -12.10933 -11.93563 -11.75078 -11.58340 -11.48575 -11.45643 -11.32102 -11.17488 -10.30651 -9.99174 -9.91483 -9.51769 -9.28413 -8.44660 -5.93160 0.27605 1.39535 1.40790 1.43240 1.55881 1.60531 2.08149 2.29383 2.30726 2.38402 2.89158 3.11142 3.22874 3.47202 3.52649 3.64016 3.85185 3.98956 4.28152 4.29152 4.33660 4.35655 4.37774 4.43533 4.47517 4.51840 4.57488 4.64896 4.71326 4.88630 4.92068 4.93435 4.99396 5.04468 5.11744 5.18600 5.29447 5.43035 5.47574 5.62356 5.94235 6.14722 6.16334 6.23871 6.48666 6.62606 6.65402 6.95615 7.14967 7.59089 8.14379 8.72673 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025606 B = 0.001856 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.248079 B =15079.866735 C =15829.220184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.100 3.900 3 H 0.059 0.941 4 N -0.677 5.677 5 C 0.066 3.934 6 C 0.439 3.561 7 O -0.622 6.622 8 N -0.574 5.574 9 C -0.333 4.333 10 H 0.079 0.921 11 C -0.014 4.014 12 N -0.920 5.920 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.271 1.271 16 H -0.273 1.273 17 C -0.090 4.090 18 H 0.089 0.911 19 C -0.134 4.134 20 C 0.123 3.877 21 N -0.595 5.595 22 C 0.613 3.387 23 O -0.578 6.578 24 C 0.106 3.894 25 N -0.454 5.454 26 C -0.054 4.054 27 C 0.008 3.992 28 N -0.520 5.520 29 H 0.438 0.562 30 C 0.119 3.881 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.347 0.653 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.202 0.798 44 H 0.233 0.767 45 H 0.080 0.920 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.209 0.412 29.861 29.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.009 4.009 3 H 0.077 0.923 4 N -0.311 5.311 5 C -0.067 4.067 6 C 0.226 3.774 7 O -0.509 6.509 8 N -0.211 5.211 9 C -0.462 4.462 10 H 0.097 0.903 11 C -0.213 4.213 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.198 1.198 15 H -0.196 1.196 16 H -0.197 1.197 17 C -0.110 4.110 18 H 0.107 0.893 19 C -0.172 4.172 20 C 0.001 3.999 21 N -0.326 5.326 22 C 0.401 3.599 23 O -0.458 6.458 24 C -0.153 4.153 25 N -0.177 5.177 26 C -0.207 4.207 27 C -0.133 4.133 28 N -0.123 5.123 29 H 0.279 0.721 30 C -0.004 4.004 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.167 0.833 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.219 0.781 44 H 0.249 0.751 45 H 0.098 0.902 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.439 -0.328 29.025 29.063 hybrid contribution 0.328 0.724 0.271 0.840 sum 1.767 0.396 29.296 29.352 Atomic orbital electron populations 1.21850 0.93941 1.02234 1.01936 1.21481 0.96373 0.95875 0.87221 0.92266 1.60131 1.34914 1.32524 1.03487 1.21569 1.02190 0.93764 0.89152 1.20894 0.83093 0.87978 0.85419 1.90491 1.56583 1.18189 1.85615 1.41940 1.58369 1.12576 1.08262 1.19665 1.42022 0.95958 0.88593 0.90306 1.26033 0.97319 0.96622 1.01364 1.69673 1.48748 1.09651 1.28071 0.84935 0.78396 0.77832 0.77217 1.19771 1.19567 1.19727 1.22483 0.95536 1.00470 0.92498 0.89307 1.22834 0.95389 1.04047 0.94904 1.22069 0.85537 1.01476 0.90784 1.48124 1.16613 1.63928 1.03982 1.16300 0.84843 0.77787 0.80987 1.90812 1.27331 1.51611 1.76055 1.22227 0.95820 1.13859 0.83364 1.70285 1.01434 1.13441 1.32583 1.23151 1.02441 1.07829 0.87251 1.23796 0.84321 1.01975 1.03166 1.43046 1.15151 1.47399 1.06666 0.72091 1.22415 0.92134 0.99903 0.85915 0.90681 0.93021 0.92748 0.83338 0.88061 0.91446 0.76992 0.91352 0.89846 0.89153 0.90615 0.90358 0.78141 0.75062 0.90165 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.17 71.98 0.66 -2.31 16 2 C 0.10 2.18 2.17 44.91 0.10 2.27 16 3 H 0.06 1.17 7.79 -2.39 -0.02 1.15 16 4 N -0.68 -20.33 5.93 -495.59 -2.94 -23.27 16 5 C 0.07 2.19 5.96 85.56 0.51 2.70 16 6 C 0.44 20.69 7.82 87.66 0.69 21.37 16 7 O -0.62 -34.28 15.78 -3.07 -0.05 -34.33 16 8 N -0.57 -29.38 5.29 -306.99 -1.62 -31.00 16 9 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 10 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 11 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 12 N -0.92 -49.67 13.05 21.66 0.28 -49.38 16 13 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 C -0.09 -1.76 2.70 -9.24 -0.02 -1.78 16 18 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 19 C -0.13 -2.43 5.56 31.78 0.18 -2.26 16 20 C 0.12 2.35 5.53 86.73 0.48 2.83 16 21 N -0.60 -12.86 3.33 -814.71 -2.71 -15.57 16 22 C 0.61 14.88 7.85 86.66 0.68 15.56 16 23 O -0.58 -16.58 17.35 -4.06 -0.07 -16.65 16 24 C 0.11 2.15 7.81 136.28 1.06 3.22 16 25 N -0.45 -8.84 8.67 -189.53 -1.64 -10.48 16 26 C -0.05 -0.67 11.85 83.88 0.99 0.33 16 27 C 0.01 0.06 12.00 83.52 1.00 1.06 16 28 N -0.52 -6.67 6.14 -188.02 -1.16 -7.83 16 29 H 0.44 3.95 8.96 -92.71 -0.83 3.11 16 30 C 0.12 2.30 5.52 87.02 0.48 2.78 16 31 H 0.07 1.25 7.59 -2.39 -0.02 1.23 16 32 H 0.05 1.16 7.35 -2.39 -0.02 1.14 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.35 10.80 6.91 -89.70 -0.62 10.18 16 35 H 0.10 3.11 7.36 -2.39 -0.02 3.09 16 36 H 0.07 1.95 8.06 -2.39 -0.02 1.93 16 37 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 38 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 39 H 0.08 1.44 8.03 -2.38 -0.02 1.42 16 40 H 0.09 1.69 7.77 -2.39 -0.02 1.67 16 41 H 0.08 1.53 7.63 -2.39 -0.02 1.51 16 42 H 0.08 1.51 7.75 -2.39 -0.02 1.49 16 43 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 44 H 0.23 -0.54 8.06 -2.91 -0.02 -0.56 16 45 H 0.08 1.63 8.04 -2.39 -0.02 1.61 16 46 H 0.08 1.48 8.05 -2.39 -0.02 1.46 16 Total: -1.00 -76.08 382.57 -0.94 -77.02 By element: Atomic # 1 Polarization: 40.19 SS G_CDS: -1.14 Total: 39.05 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: 8.09 Total: 27.41 kcal Atomic # 7 Polarization: -127.74 SS G_CDS: -9.79 Total: -137.53 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -0.12 Total: -50.98 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -76.08 -0.94 -77.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733528011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.684 kcal (2) G-P(sol) polarization free energy of solvation -76.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds