Wall clock time and date at job start Tue Mar 31 2020 18:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47264 * 2 1 4 4 C 1.53006 * 109.46783 * 119.99640 * 2 1 3 5 5 N 1.46498 * 109.46951 * 174.99928 * 4 2 1 6 6 C 1.34778 * 119.99785 * 179.97438 * 5 4 2 7 7 O 1.21594 * 120.00252 * 0.02562 * 6 5 4 8 8 C 1.47429 * 119.99828 * 179.97438 * 6 5 4 9 9 C 1.38045 * 126.41808 * 0.20100 * 8 6 5 10 10 N 1.34251 * 107.41995 * 180.25348 * 9 8 6 11 11 H 0.97005 * 125.75910 * 179.72575 * 10 9 8 12 12 N 1.39937 * 108.49274 * 359.73180 * 10 9 8 13 13 C 1.30445 * 108.89395 * 359.97438 * 12 10 9 14 14 C 1.50706 * 125.98789 * 180.02562 * 13 12 10 15 15 C 1.53000 * 117.49681 * 300.02659 * 14 13 12 16 16 C 1.53002 * 60.02940 * 107.47810 * 15 14 13 17 17 N 1.46902 * 109.47315 * 239.99651 * 2 1 3 18 18 C 1.46898 * 110.99592 * 85.00195 * 17 2 1 19 19 C 1.50700 * 109.46803 * 179.97438 * 18 17 2 20 20 O 1.21294 * 120.00261 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99968 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00080 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99826 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00275 * 180.02562 * 22 21 19 25 25 N 1.31417 * 119.99848 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00190 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47006 * 90.00403 * 26 24 22 28 28 H 1.48507 * 109.47228 * 209.99933 * 26 24 22 29 29 H 1.48496 * 109.47219 * 330.00249 * 26 24 22 30 30 H 1.08993 * 109.47213 * 300.00591 * 1 2 3 31 31 H 1.09006 * 109.46559 * 60.00399 * 1 2 3 32 32 H 1.08999 * 109.47264 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47072 * 55.00119 * 4 2 1 34 34 H 1.09001 * 109.47069 * 295.00240 * 4 2 1 35 35 H 0.96998 * 120.00460 * 0.02562 * 5 4 2 36 36 H 1.08007 * 126.28697 * 359.95842 * 9 8 6 37 37 H 1.08999 * 115.56047 * 154.34106 * 14 13 12 38 38 H 1.09002 * 117.49833 * 214.97915 * 15 14 13 39 39 H 1.09002 * 117.49953 * 359.97438 * 15 14 13 40 40 H 1.09000 * 117.49996 * 107.50493 * 16 15 14 41 41 H 1.08999 * 117.49664 * 252.51862 * 16 15 14 42 42 H 1.00900 * 110.99965 * 321.04955 * 17 2 1 43 43 H 1.08995 * 109.47573 * 299.99739 * 18 17 2 44 44 H 1.09003 * 109.47386 * 60.00307 * 18 17 2 45 45 H 0.96996 * 120.00040 * 0.02562 * 21 19 18 46 46 H 0.97006 * 119.99906 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4282 2.1914 7 8 3.5683 -1.8843 3.1427 8 6 5.6422 -1.5346 2.1322 9 6 6.4579 -1.0638 1.1229 10 7 7.7229 -1.3688 1.4533 11 1 8.5115 -1.1634 0.9270 12 7 7.7121 -2.0332 2.6848 13 6 6.4795 -2.1336 3.0998 14 6 6.0272 -2.7811 4.3834 15 6 6.3570 -4.2618 4.5820 16 6 7.1082 -3.1973 5.3840 17 7 2.0198 -0.6926 -1.1994 18 6 2.0826 0.2225 -2.3468 19 6 2.5887 -0.5216 -3.5556 20 8 2.8690 -1.6986 -3.4698 21 7 2.7289 0.1204 -4.7322 22 6 3.1888 -0.5567 -5.8321 23 1 3.4383 -1.6047 -5.7557 24 6 3.3338 0.1053 -7.0451 25 7 3.0306 1.3806 -7.1379 26 14 3.9612 -0.8171 -8.5434 27 1 2.8126 -1.4000 -9.2825 28 1 4.6959 0.1206 -9.4302 29 1 4.8737 -1.9050 -8.1088 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6053 -1.7198 1.2953 34 1 1.7515 -0.1582 2.1370 35 1 3.9825 -0.4622 0.4321 36 1 6.1369 -0.5492 0.2292 37 1 5.0817 -2.4176 4.7857 38 1 5.6283 -4.8726 5.1150 39 1 6.9006 -4.7678 3.7841 40 1 6.8739 -3.1077 6.4447 41 1 8.1460 -3.0026 5.1136 42 1 1.4496 -1.4980 -1.4100 43 1 1.0872 0.6162 -2.5525 44 1 2.7590 1.0461 -2.1182 45 1 2.5044 1.0615 -4.8010 46 1 3.1322 1.8429 -7.9847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752909208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:33 Heat of formation + Delta-G solvation = 21.291778 kcal Electronic energy + Delta-G solvation = -28094.573472 eV Core-core repulsion = 24021.335769 eV Total energy + Delta-G solvation = -4073.237702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57817 -39.20080 -38.39984 -37.18998 -36.82878 -34.13769 -33.72113 -31.58979 -31.39613 -31.02596 -30.13137 -26.56920 -26.14025 -24.15653 -23.99999 -22.89799 -22.43173 -21.04315 -20.03563 -19.47154 -19.33790 -18.52518 -17.96019 -16.48495 -16.21861 -15.91105 -15.69061 -15.41903 -15.16762 -14.93105 -14.77639 -14.60373 -14.19378 -13.98408 -13.84231 -13.40538 -13.24610 -12.96621 -12.60137 -12.45803 -12.23071 -12.06569 -11.72346 -11.65929 -11.63193 -11.44614 -11.29747 -11.10394 -11.08947 -10.98632 -10.51448 -10.45063 -10.28256 -9.73278 -9.57525 -9.44710 -9.05916 -8.73802 -8.55809 -8.16252 -8.03028 -6.48507 -3.89514 1.39379 1.96537 2.51395 3.12533 3.21896 3.27257 3.34951 3.47952 3.83286 3.88701 4.01550 4.21810 4.26719 4.45914 4.75975 4.81526 4.87877 4.93318 4.96305 5.08785 5.16456 5.23220 5.24893 5.30181 5.49457 5.51968 5.53419 5.63367 5.68015 5.72009 5.77394 5.86200 5.97660 6.02343 6.03679 6.11343 6.19647 6.25155 6.58748 6.91596 7.10377 7.35877 7.48718 7.55167 7.74391 7.99338 8.42457 8.53932 9.11245 9.47168 9.98331 10.69025 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.002419 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.675107 B =11570.404560 C =13174.391529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.083 0.917 4 C 0.137 3.863 5 N -0.711 5.711 6 C 0.593 3.407 7 O -0.551 6.551 8 C -0.281 4.281 9 C 0.112 3.888 10 N -0.460 5.460 11 H 0.445 0.555 12 N -0.301 5.301 13 C 0.164 3.836 14 C -0.080 4.080 15 C -0.159 4.159 16 C -0.171 4.171 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.270 1.270 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.405 0.595 36 H 0.190 0.810 37 H 0.139 0.861 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.354 0.646 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 0.251 19.006 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.012 3.988 5 N -0.362 5.362 6 C 0.380 3.620 7 O -0.430 6.430 8 C -0.296 4.296 9 C -0.041 4.041 10 N -0.164 5.164 11 H 0.290 0.710 12 N -0.124 5.124 13 C -0.003 4.003 14 C -0.100 4.100 15 C -0.198 4.198 16 C -0.208 4.208 17 N -0.296 5.296 18 C -0.083 4.083 19 C 0.224 3.776 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.241 0.759 36 H 0.206 0.794 37 H 0.157 0.843 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.174 0.826 43 H 0.063 0.937 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.805 -0.910 19.961 20.552 hybrid contribution -1.023 0.943 -2.307 2.694 sum 3.782 0.034 17.654 18.055 Atomic orbital electron populations 1.22432 0.96267 1.02748 1.02579 1.21867 0.93390 0.98287 0.90788 0.89838 1.21293 0.80104 1.00906 0.96469 1.45608 1.07596 1.59757 1.23225 1.17180 0.85263 0.77346 0.82188 1.90707 1.69506 1.49015 1.33818 1.20222 0.94502 1.15910 0.98986 1.23286 0.84818 0.96939 0.99052 1.46068 1.07791 1.44973 1.17603 0.71017 1.77073 1.20316 1.18614 0.96349 1.21421 0.89075 0.94986 0.94866 1.20520 1.00718 0.97206 0.91589 1.22960 1.03141 0.90712 1.02950 1.23023 0.97579 1.03294 0.96902 1.60193 1.57771 1.09175 1.02502 1.21719 1.00067 0.95617 0.90933 1.19820 0.85296 0.88262 0.84213 1.90541 1.55296 1.16203 1.84616 1.41873 1.57712 1.12465 1.07947 1.19689 1.40039 0.96420 0.86775 0.87946 1.25262 0.97627 0.95768 0.99260 1.69611 1.48618 1.08823 1.27198 0.85868 0.78918 0.78968 0.80604 1.20388 1.20908 1.19418 0.91830 0.91998 0.91951 0.91525 0.91387 0.75933 0.79362 0.84305 0.88073 0.88788 0.88354 0.88191 0.82602 0.93698 0.89700 0.77490 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 9.16 37.16 0.34 -1.32 16 2 C 0.07 0.70 2.75 -67.71 -0.19 0.51 16 3 H 0.08 0.80 7.80 -51.93 -0.40 0.39 16 4 C 0.14 1.52 5.37 -4.04 -0.02 1.50 16 5 N -0.71 -8.46 5.38 -61.38 -0.33 -8.79 16 6 C 0.59 8.23 7.81 -12.52 -0.10 8.13 16 7 O -0.55 -9.03 15.00 5.28 0.08 -8.95 16 8 C -0.28 -3.58 6.13 -105.07 -0.64 -4.22 16 9 C 0.11 1.11 11.52 -16.56 -0.19 0.92 16 10 N -0.46 -4.37 7.29 30.85 0.22 -4.14 16 11 H 0.44 2.70 8.96 -182.72 -1.64 1.06 16 12 N -0.30 -3.71 12.22 33.90 0.41 -3.30 16 13 C 0.16 2.14 6.80 -82.02 -0.56 1.58 16 14 C -0.08 -0.95 5.65 -91.73 -0.52 -1.47 16 15 C -0.16 -1.63 10.23 -26.73 -0.27 -1.90 16 16 C -0.17 -1.63 10.14 -26.69 -0.27 -1.90 16 17 N -0.66 -9.11 5.32 -107.99 -0.57 -9.68 16 18 C 0.05 0.76 5.96 -4.98 -0.03 0.73 16 19 C 0.44 9.56 7.82 -10.99 -0.09 9.48 16 20 O -0.58 -14.88 15.78 5.54 0.09 -14.79 16 21 N -0.56 -13.47 5.29 -10.96 -0.06 -13.53 16 22 C -0.30 -8.04 9.68 -14.93 -0.14 -8.18 16 23 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -23.72 13.05 55.50 0.72 -23.00 16 26 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 32 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.41 4.46 7.06 -40.82 -0.29 4.17 16 36 H 0.19 1.32 7.46 -52.48 -0.39 0.93 16 37 H 0.14 1.77 6.75 -51.93 -0.35 1.42 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.99 7.90 -51.93 -0.41 0.58 16 42 H 0.35 5.36 8.17 -39.29 -0.32 5.04 16 43 H 0.05 0.63 7.44 -51.93 -0.39 0.25 16 44 H 0.08 1.15 8.06 -51.93 -0.42 0.74 16 45 H 0.39 8.96 7.90 -40.82 -0.32 8.64 16 46 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -33.62 392.11 -9.11 -42.73 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -7.79 Total: 17.77 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -2.78 Total: 4.34 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.40 Total: -62.45 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.17 Total: -23.74 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.62 -9.11 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752909208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.018 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds