Wall clock time and date at job start Tue Mar 31 2020 18:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47264 * 2 1 4 4 C 1.53006 * 109.46783 * 119.99640 * 2 1 3 5 5 N 1.46498 * 109.46951 * 174.99928 * 4 2 1 6 6 C 1.34778 * 119.99785 * 179.97438 * 5 4 2 7 7 O 1.21594 * 120.00252 * 0.02562 * 6 5 4 8 8 C 1.47429 * 119.99828 * 179.97438 * 6 5 4 9 9 C 1.38045 * 126.41808 * 0.20100 * 8 6 5 10 10 N 1.34251 * 107.41995 * 180.25348 * 9 8 6 11 11 H 0.97005 * 125.75910 * 179.72575 * 10 9 8 12 12 N 1.39937 * 108.49274 * 359.73180 * 10 9 8 13 13 C 1.30445 * 108.89395 * 359.97438 * 12 10 9 14 14 C 1.50706 * 125.98789 * 180.02562 * 13 12 10 15 15 C 1.53000 * 117.49681 * 300.02659 * 14 13 12 16 16 C 1.53002 * 60.02940 * 107.47810 * 15 14 13 17 17 N 1.46902 * 109.47315 * 239.99651 * 2 1 3 18 18 C 1.46898 * 110.99592 * 85.00195 * 17 2 1 19 19 C 1.50700 * 109.46803 * 179.97438 * 18 17 2 20 20 O 1.21294 * 120.00261 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99968 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00080 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99826 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00275 * 180.02562 * 22 21 19 25 25 N 1.31417 * 119.99848 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00190 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47006 * 90.00403 * 26 24 22 28 28 H 1.48507 * 109.47228 * 209.99933 * 26 24 22 29 29 H 1.48496 * 109.47219 * 330.00249 * 26 24 22 30 30 H 1.08993 * 109.47213 * 300.00591 * 1 2 3 31 31 H 1.09006 * 109.46559 * 60.00399 * 1 2 3 32 32 H 1.08999 * 109.47264 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47072 * 55.00119 * 4 2 1 34 34 H 1.09001 * 109.47069 * 295.00240 * 4 2 1 35 35 H 0.96998 * 120.00460 * 0.02562 * 5 4 2 36 36 H 1.08007 * 126.28697 * 359.95842 * 9 8 6 37 37 H 1.08999 * 115.56047 * 154.34106 * 14 13 12 38 38 H 1.09002 * 117.49833 * 214.97915 * 15 14 13 39 39 H 1.09002 * 117.49953 * 359.97438 * 15 14 13 40 40 H 1.09000 * 117.49996 * 107.50493 * 16 15 14 41 41 H 1.08999 * 117.49664 * 252.51862 * 16 15 14 42 42 H 1.00900 * 110.99965 * 321.04955 * 17 2 1 43 43 H 1.08995 * 109.47573 * 299.99739 * 18 17 2 44 44 H 1.09003 * 109.47386 * 60.00307 * 18 17 2 45 45 H 0.96996 * 120.00040 * 0.02562 * 21 19 18 46 46 H 0.97006 * 119.99906 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4282 2.1914 7 8 3.5683 -1.8843 3.1427 8 6 5.6422 -1.5346 2.1322 9 6 6.4579 -1.0638 1.1229 10 7 7.7229 -1.3688 1.4533 11 1 8.5115 -1.1634 0.9270 12 7 7.7121 -2.0332 2.6848 13 6 6.4795 -2.1336 3.0998 14 6 6.0272 -2.7811 4.3834 15 6 6.3570 -4.2618 4.5820 16 6 7.1082 -3.1973 5.3840 17 7 2.0198 -0.6926 -1.1994 18 6 2.0826 0.2225 -2.3468 19 6 2.5887 -0.5216 -3.5556 20 8 2.8690 -1.6986 -3.4698 21 7 2.7289 0.1204 -4.7322 22 6 3.1888 -0.5567 -5.8321 23 1 3.4383 -1.6047 -5.7557 24 6 3.3338 0.1053 -7.0451 25 7 3.0306 1.3806 -7.1379 26 14 3.9612 -0.8171 -8.5434 27 1 2.8126 -1.4000 -9.2825 28 1 4.6959 0.1206 -9.4302 29 1 4.8737 -1.9050 -8.1088 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6053 -1.7198 1.2953 34 1 1.7515 -0.1582 2.1370 35 1 3.9825 -0.4622 0.4321 36 1 6.1369 -0.5492 0.2292 37 1 5.0817 -2.4176 4.7857 38 1 5.6283 -4.8726 5.1150 39 1 6.9006 -4.7678 3.7841 40 1 6.8739 -3.1077 6.4447 41 1 8.1460 -3.0026 5.1136 42 1 1.4496 -1.4980 -1.4100 43 1 1.0872 0.6162 -2.5525 44 1 2.7590 1.0461 -2.1182 45 1 2.5044 1.0615 -4.8010 46 1 3.1322 1.8429 -7.9847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752909208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:33 Heat of formation + Delta-G solvation = -4.929080 kcal Electronic energy + Delta-G solvation = -28095.710493 eV Core-core repulsion = 24021.335769 eV Total energy + Delta-G solvation = -4074.374724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44826 -40.33811 -39.94343 -38.09603 -37.89626 -35.93381 -34.91027 -33.24635 -32.46147 -32.13093 -31.06415 -27.92270 -27.21941 -25.62743 -24.99536 -23.81105 -23.22273 -21.95795 -21.06768 -20.96594 -20.31813 -19.89107 -19.40220 -17.78448 -17.33785 -17.04488 -16.62736 -16.51259 -16.37999 -16.26540 -16.00934 -15.69628 -15.57653 -15.18149 -15.00464 -14.68444 -14.38205 -14.00848 -13.65100 -13.60928 -13.39789 -13.29022 -13.05470 -12.92694 -12.73965 -12.47700 -12.41937 -12.38093 -12.17174 -12.11898 -11.94423 -11.83335 -11.48017 -11.37427 -10.76940 -10.29858 -10.29467 -10.05281 -9.97931 -9.64529 -9.29591 -8.44752 -5.92455 0.54884 1.02103 1.38469 1.43010 1.54552 1.76940 2.10566 2.29738 2.39733 2.50182 2.95181 3.04646 3.23537 3.39764 3.58469 3.62557 3.91847 4.03249 4.06965 4.13903 4.16730 4.36673 4.38082 4.40815 4.41814 4.54734 4.66321 4.67551 4.73568 4.76407 4.87931 4.94897 4.95434 5.06126 5.21168 5.26652 5.30645 5.35815 5.43496 5.62896 5.93146 6.14309 6.23149 6.40361 6.48650 6.63666 6.78590 7.16315 7.42275 7.61361 8.16904 8.72386 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.002419 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.675107 B =11570.404560 C =13174.391529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.102 0.898 4 C 0.138 3.862 5 N -0.703 5.703 6 C 0.589 3.411 7 O -0.585 6.585 8 C -0.313 4.313 9 C 0.132 3.868 10 N -0.448 5.448 11 H 0.460 0.540 12 N -0.320 5.320 13 C 0.149 3.851 14 C -0.102 4.102 15 C -0.158 4.158 16 C -0.153 4.153 17 N -0.672 5.672 18 C 0.066 3.934 19 C 0.439 3.561 20 O -0.623 6.623 21 N -0.575 5.575 22 C -0.329 4.329 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.988 3.012 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.274 1.274 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.411 0.589 36 H 0.220 0.780 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.344 0.656 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.397 0.603 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.354 1.435 18.967 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 H 0.120 0.880 4 C 0.014 3.986 5 N -0.354 5.354 6 C 0.377 3.623 7 O -0.467 6.467 8 C -0.328 4.328 9 C -0.023 4.023 10 N -0.154 5.154 11 H 0.308 0.692 12 N -0.142 5.142 13 C -0.018 4.018 14 C -0.122 4.122 15 C -0.196 4.196 16 C -0.190 4.190 17 N -0.305 5.305 18 C -0.067 4.067 19 C 0.227 3.773 20 O -0.509 6.509 21 N -0.212 5.212 22 C -0.459 4.459 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.812 3.188 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.198 1.198 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.247 0.753 36 H 0.236 0.764 37 H 0.143 0.857 38 H 0.132 0.868 39 H 0.105 0.895 40 H 0.136 0.864 41 H 0.115 0.885 42 H 0.163 0.837 43 H 0.084 0.916 44 H 0.130 0.870 45 H 0.230 0.770 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.013 0.314 19.916 20.540 hybrid contribution -1.082 0.565 -2.254 2.563 sum 3.932 0.879 17.662 18.115 Atomic orbital electron populations 1.22387 0.95057 1.02738 1.03454 1.21865 0.94252 0.98526 0.88609 0.87955 1.21331 0.79603 1.00367 0.97334 1.45573 1.07916 1.59055 1.22822 1.17403 0.85830 0.77006 0.82025 1.90679 1.70255 1.50599 1.35142 1.20308 0.94261 1.17924 1.00344 1.23671 0.84358 0.95372 0.98892 1.46118 1.08485 1.43865 1.16904 0.69182 1.77011 1.20105 1.19533 0.97599 1.21655 0.89440 0.95257 0.95413 1.20509 1.01082 0.98321 0.92321 1.23007 1.03414 0.90163 1.03003 1.23068 0.96721 1.01701 0.97502 1.60174 1.58423 1.09007 1.02855 1.21586 1.01327 0.95328 0.88419 1.20952 0.83215 0.87981 0.85173 1.90517 1.56530 1.18365 1.85480 1.41936 1.58456 1.12635 1.08183 1.19608 1.41870 0.95831 0.88577 0.90472 1.25956 0.97438 0.96570 1.01245 1.69664 1.48865 1.09553 1.28003 0.85000 0.78391 0.77876 0.77530 1.19922 1.19685 1.19848 0.90024 0.91986 0.92497 0.93104 0.90392 0.75284 0.76354 0.85704 0.86816 0.89527 0.86363 0.88513 0.83683 0.91642 0.86994 0.76963 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 9.16 71.98 0.66 -2.15 16 2 C 0.08 1.41 2.75 44.92 0.12 1.53 16 3 H 0.10 1.55 7.80 -2.39 -0.02 1.53 16 4 C 0.14 2.89 5.37 86.38 0.46 3.35 16 5 N -0.70 -15.97 5.38 -466.37 -2.51 -18.48 16 6 C 0.59 16.34 7.81 86.66 0.68 17.02 16 7 O -0.58 -19.63 15.00 -4.01 -0.06 -19.69 16 8 C -0.31 -7.89 6.13 -20.15 -0.12 -8.01 16 9 C 0.13 2.40 11.52 84.28 0.97 3.37 16 10 N -0.45 -7.89 7.29 -56.32 -0.41 -8.30 16 11 H 0.46 4.76 8.96 -213.42 -1.91 2.84 16 12 N -0.32 -7.73 12.22 -46.67 -0.57 -8.30 16 13 C 0.15 3.93 6.80 43.52 0.30 4.22 16 14 C -0.10 -2.48 5.65 -11.51 -0.07 -2.55 16 15 C -0.16 -3.22 10.23 30.60 0.31 -2.91 16 16 C -0.15 -2.84 10.14 30.62 0.31 -2.53 16 17 N -0.67 -17.23 5.32 -495.56 -2.63 -19.86 16 18 C 0.07 1.86 5.96 85.56 0.51 2.37 16 19 C 0.44 18.87 7.82 87.66 0.69 19.56 16 20 O -0.62 -32.03 15.78 -3.07 -0.05 -32.08 16 21 N -0.57 -27.38 5.29 -306.99 -1.62 -29.01 16 22 C -0.33 -17.83 9.68 84.04 0.81 -17.02 16 23 H 0.08 4.50 7.16 -2.91 -0.02 4.48 16 24 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 25 N -0.92 -47.73 13.05 21.66 0.28 -47.44 16 26 Si 0.99 41.60 29.55 68.60 2.03 43.62 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 29 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.01 7.45 -2.38 -0.02 0.99 16 32 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.41 8.26 7.06 -92.71 -0.65 7.61 16 36 H 0.22 2.47 7.46 -2.91 -0.02 2.45 16 37 H 0.13 3.34 6.75 -2.39 -0.02 3.33 16 38 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.10 1.87 7.90 -2.39 -0.02 1.85 16 42 H 0.34 10.11 8.17 -89.69 -0.73 9.37 16 43 H 0.07 1.64 7.44 -2.39 -0.02 1.62 16 44 H 0.11 2.63 8.06 -2.39 -0.02 2.61 16 45 H 0.40 17.88 7.90 -92.71 -0.73 17.14 16 46 H 0.28 13.50 8.31 -92.70 -0.77 12.73 16 Total: -1.00 -73.97 392.11 -2.41 -76.39 By element: Atomic # 1 Polarization: 50.05 SS G_CDS: -2.97 Total: 47.08 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 6.10 Total: 16.08 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -7.46 Total: -131.40 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.11 Total: -51.78 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -73.97 -2.41 -76.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752909208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.456 kcal (2) G-P(sol) polarization free energy of solvation -73.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds