Wall clock time and date at job start Tue Mar 31 2020 18:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46844 * 2 1 4 4 C 1.50699 * 109.47146 * 240.00320 * 2 1 3 5 5 O 1.21278 * 120.00118 * 239.99954 * 4 2 1 6 6 N 1.34780 * 119.99845 * 59.99509 * 4 2 1 7 7 C 1.46502 * 119.99864 * 179.97438 * 6 4 2 8 8 C 1.50706 * 109.47067 * 180.02562 * 7 6 4 9 9 C 1.30999 * 119.99914 * 125.00278 * 8 7 6 10 10 C 1.50697 * 119.99767 * 179.97438 * 9 8 7 11 11 N 1.46905 * 109.47066 * 124.99987 * 10 9 8 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 10 14 14 O 1.21292 * 120.00024 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99767 * 180.02562 * 13 12 11 16 16 C 1.37102 * 120.00095 * 179.97438 * 15 13 12 17 17 H 1.08004 * 119.99386 * 359.97438 * 16 15 13 18 18 C 1.38941 * 120.00393 * 179.97438 * 16 15 13 19 19 N 1.31416 * 119.99786 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00292 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47191 * 60.00031 * 20 18 16 22 22 H 1.48504 * 109.47312 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47299 * 300.00334 * 20 18 16 24 24 N 1.46500 * 109.47122 * 120.00305 * 2 1 3 25 25 C 1.34948 * 126.03617 * 34.71639 * 24 2 1 26 26 C 1.35320 * 107.74081 * 179.83674 * 25 24 2 27 27 C 1.39867 * 107.92024 * 0.42660 * 26 25 24 28 28 N 1.30832 * 108.20716 * 359.73294 * 27 26 25 29 29 H 1.08992 * 109.47003 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46941 * 299.99901 * 1 2 3 31 31 H 1.09004 * 109.47074 * 59.99287 * 1 2 3 32 32 H 0.97003 * 120.00125 * 0.02562 * 6 4 2 33 33 H 1.09001 * 109.47308 * 60.00406 * 7 6 4 34 34 H 1.08997 * 109.47306 * 300.00392 * 7 6 4 35 35 H 1.08001 * 119.99801 * 305.00350 * 8 7 6 36 36 H 1.08002 * 119.99759 * 0.02562 * 9 8 7 37 37 H 1.09001 * 109.47558 * 5.00150 * 10 9 8 38 38 H 1.08998 * 109.47216 * 244.99813 * 10 9 8 39 39 H 1.00901 * 110.99869 * 56.04737 * 11 10 9 40 40 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 41 41 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 42 42 H 0.96997 * 120.00713 * 359.97438 * 15 13 12 43 43 H 0.97001 * 119.99428 * 179.97438 * 19 18 16 44 44 H 1.07995 * 126.12721 * 359.97438 * 25 24 2 45 45 H 1.07997 * 126.03721 * 180.15627 * 26 25 24 46 46 H 1.08009 * 125.89335 * 179.71821 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7066 -0.2498 -2.4546 7 6 2.1954 -0.9400 -3.6508 8 6 1.6934 -0.2293 -4.8813 9 6 2.5409 0.1825 -5.7914 10 6 2.0388 0.8927 -7.0220 11 7 2.7144 2.1910 -7.1481 12 6 2.2485 2.9135 -8.3392 13 6 2.9626 4.2371 -8.4352 14 8 3.7790 4.5481 -7.5939 15 7 2.6932 5.0756 -9.4554 16 6 3.3425 6.2800 -9.5425 17 1 4.0695 6.5569 -8.7933 18 6 3.0653 7.1443 -10.5945 19 7 2.1803 6.8075 -11.5058 20 14 3.9494 8.7856 -10.7128 21 1 5.4126 8.5534 -10.8153 22 1 3.4780 9.5161 -11.9167 23 1 3.6600 9.5922 -9.5000 24 7 2.0183 -0.6907 1.1961 25 6 1.4373 -1.7527 1.7925 26 6 2.1967 -2.0929 2.8595 27 6 3.2735 -1.2025 2.9229 28 7 3.1677 -0.3615 1.9263 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.1492 0.5390 -2.5435 33 1 1.8326 -1.9679 -3.6511 34 1 3.2854 -0.9396 -3.6507 35 1 0.6350 -0.0595 -5.0127 36 1 3.5993 0.0123 -5.6601 37 1 0.9634 1.0495 -6.9378 38 1 2.2497 0.2864 -7.9029 39 1 3.7169 2.0770 -7.1630 40 1 2.4605 2.3213 -9.2295 41 1 1.1746 3.0843 -8.2636 42 1 2.0401 4.8271 -10.1281 43 1 1.9866 7.4110 -12.2400 44 1 0.5301 -2.2443 1.4738 45 1 2.0030 -2.9055 3.5441 46 1 4.0569 -1.2082 3.6664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754097526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:29 Heat of formation + Delta-G solvation = 1.803403 kcal Electronic energy + Delta-G solvation = -26588.945294 eV Core-core repulsion = 22514.862513 eV Total energy + Delta-G solvation = -4074.082782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.27812 -40.72982 -40.15896 -37.81502 -36.41730 -35.84883 -35.65771 -33.82935 -33.23401 -31.08475 -30.57749 -29.53544 -27.64854 -26.18665 -25.37886 -23.70912 -22.46142 -22.00006 -21.41938 -21.06099 -20.44963 -19.87388 -18.78567 -18.16537 -17.88446 -17.01899 -16.90293 -16.60899 -16.45419 -16.00751 -15.83692 -15.58563 -15.26021 -15.11019 -15.01543 -14.79790 -14.48808 -14.41368 -14.07042 -13.76736 -13.53925 -13.47321 -13.32282 -13.21711 -13.06291 -12.91154 -12.72192 -12.62891 -12.43576 -12.13047 -12.05192 -11.65135 -11.50753 -11.33110 -10.55612 -10.36974 -10.34505 -10.10279 -10.01669 -9.52497 -9.27772 -8.46934 -5.95803 0.80811 1.08412 1.35935 1.39773 1.42086 1.46683 1.52755 1.97146 2.05198 2.28596 2.30123 3.01025 3.20456 3.40771 3.56971 3.62441 3.74805 3.79815 3.96959 4.07361 4.13400 4.30138 4.40973 4.45576 4.52069 4.55993 4.57314 4.62402 4.65064 4.67115 4.71673 4.85097 4.87760 5.07571 5.14888 5.21530 5.40493 5.64971 5.72561 5.74729 5.89321 6.04857 6.09690 6.35930 6.38716 6.59971 6.75371 7.02923 7.12350 7.56048 8.11574 8.70052 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.001456 C = 0.001398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.809822 B =19229.666838 C =20026.500604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 H 0.135 0.865 4 C 0.500 3.500 5 O -0.575 6.575 6 N -0.705 5.705 7 C 0.154 3.846 8 C -0.161 4.161 9 C -0.127 4.127 10 C 0.086 3.914 11 N -0.682 5.682 12 C 0.065 3.935 13 C 0.435 3.565 14 O -0.626 6.626 15 N -0.572 5.572 16 C -0.337 4.337 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.919 5.919 20 Si 0.992 3.008 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.272 1.272 24 N -0.366 5.366 25 C 0.062 3.938 26 C -0.285 4.285 27 C 0.037 3.963 28 N -0.342 5.342 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.420 0.580 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.140 0.860 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.343 0.657 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.198 0.802 45 H 0.170 0.830 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 -19.311 20.341 29.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.152 0.848 4 C 0.285 3.715 5 O -0.453 6.453 6 N -0.358 5.358 7 C 0.031 3.969 8 C -0.180 4.180 9 C -0.146 4.146 10 C -0.041 4.041 11 N -0.314 5.314 12 C -0.067 4.067 13 C 0.223 3.777 14 O -0.512 6.512 15 N -0.209 5.209 16 C -0.467 4.467 17 H 0.096 0.904 18 C -0.210 4.210 19 N -0.559 5.559 20 Si 0.816 3.184 21 H -0.198 1.198 22 H -0.194 1.194 23 H -0.198 1.198 24 N -0.148 5.148 25 C -0.084 4.084 26 C -0.314 4.314 27 C -0.148 4.148 28 N -0.163 5.163 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.257 0.743 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.158 0.842 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.161 0.839 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.215 0.785 45 H 0.187 0.813 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.565 -18.306 20.482 29.088 hybrid contribution 0.433 -0.154 -0.989 1.090 sum -9.132 -18.460 19.493 28.358 Atomic orbital electron populations 1.22217 0.87135 1.05203 1.06549 1.21349 0.98543 0.97326 0.79425 0.84789 1.21191 0.80038 0.84493 0.85756 1.90750 1.39120 1.28294 1.87179 1.45846 1.53280 1.32378 1.04261 1.20273 0.98284 0.96146 0.82167 1.22752 1.00791 1.00545 0.93900 1.22820 0.99696 0.96234 0.95880 1.21137 0.99677 0.87597 0.95732 1.60139 1.11494 1.19900 1.39895 1.21551 1.00619 0.91437 0.93101 1.20939 0.86055 0.87998 0.82703 1.90496 1.39490 1.78264 1.42967 1.41920 1.38447 1.16450 1.24111 1.19636 1.21635 0.95079 1.10326 0.90411 1.26008 0.97484 1.02858 0.94695 1.69662 1.33510 1.39135 1.13639 0.85006 0.78300 0.77160 0.77973 1.19801 1.19406 1.19772 1.48418 1.19331 1.25362 1.21726 1.22991 1.00556 0.90245 0.94596 1.21862 0.98795 1.06694 1.04041 1.24403 0.99959 0.93592 0.96889 1.77306 1.03844 1.26271 1.08842 0.90293 0.89125 0.86763 0.74260 0.90382 0.92890 0.84206 0.87619 0.88966 0.93063 0.83872 0.91424 0.87358 0.76886 0.91264 0.78482 0.81263 0.77936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 8.72 71.98 0.63 -0.15 16 2 C 0.14 1.99 3.73 44.25 0.17 2.15 16 3 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 4 C 0.50 9.61 7.22 87.66 0.63 10.24 16 5 O -0.57 -16.93 16.42 -3.02 -0.05 -16.98 16 6 N -0.70 -9.73 5.44 -466.78 -2.54 -12.27 16 7 C 0.15 2.44 6.11 85.63 0.52 2.97 16 8 C -0.16 -2.20 9.24 25.65 0.24 -1.96 16 9 C -0.13 -2.24 9.38 25.65 0.24 -2.00 16 10 C 0.09 1.70 6.12 85.55 0.52 2.22 16 11 N -0.68 -20.04 6.11 -521.98 -3.19 -23.23 16 12 C 0.07 2.10 6.17 85.56 0.53 2.62 16 13 C 0.44 20.33 7.82 87.66 0.69 21.01 16 14 O -0.63 -34.48 15.78 -3.07 -0.05 -34.53 16 15 N -0.57 -28.90 5.29 -306.99 -1.62 -30.52 16 16 C -0.34 -19.03 9.68 84.04 0.81 -18.22 16 17 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 18 C -0.01 -0.55 5.50 84.92 0.47 -0.09 16 19 N -0.92 -48.86 13.05 21.66 0.28 -48.58 16 20 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 N -0.37 -7.31 3.02 -331.06 -1.00 -8.31 16 25 C 0.06 0.99 10.58 83.54 0.88 1.87 16 26 C -0.29 -4.63 10.80 21.99 0.24 -4.39 16 27 C 0.04 0.73 12.02 85.24 1.02 1.75 16 28 N -0.34 -8.52 12.58 -57.02 -0.72 -9.24 16 29 H 0.08 0.34 7.15 -2.39 -0.02 0.32 16 30 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.11 0.04 7.56 -2.38 -0.02 0.02 16 32 H 0.42 3.30 7.88 -92.71 -0.73 2.57 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.07 7.79 -2.39 -0.02 1.05 16 35 H 0.14 1.35 7.84 -2.91 -0.02 1.32 16 36 H 0.11 2.00 7.84 -2.91 -0.02 1.98 16 37 H 0.09 1.54 7.79 -2.39 -0.02 1.53 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.34 10.89 8.42 -89.69 -0.76 10.14 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 42 H 0.40 18.89 7.90 -92.71 -0.73 18.15 16 43 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.20 1.74 7.25 -2.91 -0.02 1.71 16 45 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 46 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -82.52 399.55 -0.46 -82.98 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: -1.19 Total: 38.07 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 7.59 Total: 18.05 kcal Atomic # 7 Polarization: -123.36 SS G_CDS: -8.79 Total: -132.15 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.10 Total: -51.51 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -82.52 -0.46 -82.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754097526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.780 kcal (2) G-P(sol) polarization free energy of solvation -82.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds