Wall clock time and date at job start Tue Mar 31 2020 18:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47405 * 2 1 4 4 C 1.50702 * 109.47060 * 239.99685 * 2 1 3 5 5 O 1.21283 * 119.99449 * 240.00061 * 4 2 1 6 6 N 1.34772 * 120.00175 * 59.72636 * 4 2 1 7 7 C 1.46495 * 120.00269 * 180.27673 * 6 4 2 8 8 C 1.50699 * 109.47306 * 180.02562 * 7 6 4 9 9 C 1.30999 * 119.99717 * 127.15727 * 8 7 6 10 10 C 1.50703 * 120.00623 * 7.55595 * 9 8 7 11 11 N 1.46898 * 109.46915 * 127.00480 * 10 9 8 12 12 C 1.46900 * 110.99845 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47297 * 180.02562 * 12 11 10 14 14 O 1.21288 * 120.00018 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99981 * 180.02562 * 13 12 11 16 16 C 1.37098 * 119.99992 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99875 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00175 * 179.97438 * 16 15 13 19 19 N 1.31410 * 119.99760 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00156 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47044 * 60.00143 * 20 18 16 22 22 H 1.48498 * 109.47327 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47166 * 300.00359 * 20 18 16 24 24 N 1.46503 * 109.46869 * 119.99479 * 2 1 3 25 25 C 1.34947 * 126.03943 * 34.72096 * 24 2 1 26 26 C 1.35311 * 107.74797 * 179.83276 * 25 24 2 27 27 C 1.39867 * 107.92087 * 0.42523 * 26 25 24 28 28 N 1.30839 * 108.20218 * 359.73399 * 27 26 25 29 29 H 1.08994 * 109.47058 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47055 * 300.00704 * 1 2 3 31 31 H 1.09005 * 109.46625 * 59.99781 * 1 2 3 32 32 H 0.97004 * 119.99949 * 0.27429 * 6 4 2 33 33 H 1.09005 * 109.46915 * 300.00483 * 7 6 4 34 34 H 1.09003 * 109.47183 * 59.99506 * 7 6 4 35 35 H 1.07995 * 120.00108 * 307.15523 * 8 7 6 36 36 H 1.08003 * 119.99842 * 187.56039 * 9 8 7 37 37 H 1.08992 * 109.47248 * 247.00836 * 10 9 8 38 38 H 1.09004 * 109.46670 * 7.00776 * 10 9 8 39 39 H 1.00899 * 111.00112 * 56.05484 * 11 10 9 40 40 H 1.08999 * 109.47395 * 300.00902 * 12 11 10 41 41 H 1.09005 * 109.46999 * 60.00144 * 12 11 10 42 42 H 0.96999 * 120.00289 * 359.97438 * 15 13 12 43 43 H 0.96999 * 119.99966 * 180.02562 * 19 18 16 44 44 H 1.08003 * 126.11950 * 359.97438 * 25 24 2 45 45 H 1.08002 * 126.03589 * 180.15143 * 26 25 24 46 46 H 1.08002 * 125.89859 * 179.71683 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1190 6 7 1.7022 -0.2534 -2.4545 7 6 2.1855 -0.9475 -3.6506 8 6 1.6792 -0.2400 -4.8811 9 6 2.5191 0.1307 -5.8156 10 6 3.9624 -0.2972 -5.7447 11 7 4.3457 -0.9382 -7.0097 12 6 5.7494 -1.3699 -6.9769 13 6 6.1056 -2.0208 -8.2886 14 8 5.2720 -2.1161 -9.1644 15 7 7.3503 -2.4979 -8.4881 16 6 7.6742 -3.0905 -9.6812 17 1 6.9319 -3.1754 -10.4611 18 6 8.9574 -3.5819 -9.8871 19 7 9.8605 -3.4791 -8.9379 20 14 9.3986 -4.3900 -11.5124 21 1 9.2055 -3.4169 -12.6175 22 1 10.8175 -4.8268 -11.4791 23 1 8.5232 -5.5692 -11.7327 24 7 2.0183 -0.6905 1.1963 25 6 1.4373 -1.7525 1.7928 26 6 2.1966 -2.0927 2.8598 27 6 3.2734 -1.2023 2.9232 28 7 3.1676 -0.3614 1.9264 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.1445 0.5353 -2.5436 33 1 3.2755 -0.9481 -3.6548 34 1 1.8217 -1.9751 -3.6463 35 1 0.6241 -0.0386 -4.9926 36 1 2.1772 0.7431 -6.6369 37 1 4.5922 0.5758 -5.5743 38 1 4.0918 -1.0043 -4.9253 39 1 4.1739 -0.3250 -7.7924 40 1 6.3920 -0.5046 -6.8146 41 1 5.8909 -2.0846 -6.1660 42 1 8.0168 -2.4221 -7.7875 43 1 10.7564 -3.8218 -9.0818 44 1 0.5301 -2.2442 1.4740 45 1 2.0027 -2.9052 3.5444 46 1 4.0568 -1.2079 3.6667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754097527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:34 Heat of formation + Delta-G solvation = 40.192522 kcal Electronic energy + Delta-G solvation = -26987.031421 eV Core-core repulsion = 22914.613316 eV Total energy + Delta-G solvation = -4072.418104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.61960 -39.99157 -38.35852 -37.12284 -35.18674 -35.03895 -33.89885 -32.87300 -31.20430 -30.39547 -29.91971 -28.07825 -26.51926 -25.05435 -24.61787 -23.17658 -21.85647 -21.34135 -20.39162 -19.56913 -19.00828 -17.96053 -17.71788 -17.51538 -16.61643 -16.06066 -15.98444 -15.51089 -15.18265 -14.99538 -14.57515 -14.47423 -14.28293 -14.16684 -13.92476 -13.71058 -13.63280 -13.27589 -13.13951 -12.98449 -12.85815 -12.74170 -12.48532 -12.20221 -11.87174 -11.54972 -11.49065 -11.01306 -10.96243 -10.90866 -10.51907 -10.43385 -10.20581 -9.79140 -9.61614 -9.49358 -9.26061 -8.85798 -8.46750 -8.06257 -7.95275 -6.40505 -3.81590 1.48077 1.77554 2.01942 2.13243 2.63608 2.92868 3.21036 3.26734 3.31140 3.89753 3.91270 4.10640 4.13881 4.25005 4.39579 4.46389 4.53324 4.64845 4.75832 4.79654 4.94311 5.07199 5.14692 5.20415 5.25395 5.29422 5.30951 5.47265 5.51434 5.55983 5.65503 5.75663 5.79958 5.93988 5.97788 6.25570 6.29369 6.36896 6.51822 6.63039 7.01282 7.14961 7.42951 7.55976 7.61400 7.72646 8.06767 8.61992 9.18466 9.54956 10.06267 10.77126 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.001651 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.336643 B =16959.298816 C =18265.616695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.128 0.872 4 C 0.497 3.503 5 O -0.515 6.515 6 N -0.720 5.720 7 C 0.141 3.859 8 C -0.186 4.186 9 C -0.107 4.107 10 C 0.068 3.932 11 N -0.663 5.663 12 C 0.049 3.951 13 C 0.441 3.559 14 O -0.584 6.584 15 N -0.563 5.563 16 C -0.301 4.301 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.932 3.068 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 N -0.357 5.357 25 C 0.067 3.933 26 C -0.273 4.273 27 C 0.048 3.952 28 N -0.291 5.291 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.401 0.599 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.038 0.962 38 H 0.085 0.915 39 H 0.350 0.650 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.393 0.607 43 H 0.272 0.728 44 H 0.170 0.830 45 H 0.148 0.852 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.242 10.719 22.663 32.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.146 0.854 4 C 0.280 3.720 5 O -0.389 6.389 6 N -0.373 5.373 7 C 0.019 3.981 8 C -0.205 4.205 9 C -0.126 4.126 10 C -0.061 4.061 11 N -0.295 5.295 12 C -0.083 4.083 13 C 0.226 3.774 14 O -0.468 6.468 15 N -0.199 5.199 16 C -0.430 4.430 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.759 3.241 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 N -0.140 5.140 25 C -0.079 4.079 26 C -0.302 4.302 27 C -0.138 4.138 28 N -0.112 5.112 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.236 0.764 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.169 0.831 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.187 0.813 45 H 0.165 0.835 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -19.827 10.297 21.616 31.086 hybrid contribution 0.578 0.061 -0.173 0.606 sum -19.249 10.358 21.443 30.620 Atomic orbital electron populations 1.22167 0.90482 1.04466 1.04794 1.21063 0.96095 0.97758 0.81340 0.85392 1.20748 0.81200 0.85347 0.84670 1.90813 1.36326 1.25520 1.86287 1.45933 1.53992 1.32201 1.05148 1.20546 1.00072 0.96055 0.81468 1.22626 0.99393 1.02341 0.96154 1.22874 0.94995 0.96398 0.98336 1.21299 0.92963 0.97549 0.94245 1.60095 1.20564 1.45318 1.03533 1.21700 0.88562 0.99465 0.98581 1.19767 0.83567 0.85069 0.88994 1.90517 1.48963 1.61908 1.45429 1.41856 1.09970 1.51760 1.16343 1.19659 0.96711 1.33690 0.92963 0.87950 1.25276 0.95498 0.97929 0.99265 1.69606 1.04647 1.46755 1.33246 0.85902 0.77270 0.79539 0.81405 1.19920 1.20970 1.19873 1.48161 1.19722 1.24822 1.21270 1.22408 0.99847 0.90773 0.94840 1.21485 0.99111 1.06179 1.03459 1.23900 0.99077 0.93852 0.96997 1.77372 1.01980 1.24504 1.07297 0.90757 0.89981 0.89235 0.76443 0.89835 0.90491 0.86306 0.86432 0.94398 0.89701 0.83090 0.93769 0.89495 0.77419 0.91792 0.81320 0.83454 0.79939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.48 8.72 37.16 0.32 -0.16 16 2 C 0.14 0.99 3.73 -69.08 -0.26 0.73 16 3 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.50 4.81 7.23 -10.99 -0.08 4.73 16 5 O -0.52 -7.74 16.42 5.56 0.09 -7.65 16 6 N -0.72 -5.09 5.44 -61.47 -0.33 -5.42 16 7 C 0.14 1.31 5.76 -5.20 -0.03 1.28 16 8 C -0.19 -1.50 9.63 -36.03 -0.35 -1.85 16 9 C -0.11 -1.04 9.77 -36.02 -0.35 -1.39 16 10 C 0.07 0.83 5.77 -4.98 -0.03 0.80 16 11 N -0.66 -10.78 6.11 -116.34 -0.71 -11.49 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 C 0.44 10.62 7.82 -10.98 -0.09 10.53 16 14 O -0.58 -16.08 15.78 5.55 0.09 -15.99 16 15 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 16 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 17 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 20 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 N -0.36 -3.54 3.02 -55.99 -0.17 -3.71 16 25 C 0.07 0.58 10.58 -17.23 -0.18 0.39 16 26 C -0.27 -2.38 10.80 -40.02 -0.43 -2.81 16 27 C 0.05 0.47 12.03 -17.37 -0.21 0.26 16 28 N -0.29 -3.48 12.58 30.62 0.39 -3.09 16 29 H 0.07 0.24 7.15 -51.93 -0.37 -0.13 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.06 7.55 -51.93 -0.39 -0.33 16 32 H 0.40 1.43 7.87 -40.82 -0.32 1.11 16 33 H 0.08 0.93 5.30 -51.93 -0.28 0.66 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 1.06 5.30 -51.93 -0.27 0.78 16 39 H 0.35 5.72 8.42 -39.29 -0.33 5.39 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 43 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.17 0.94 7.25 -52.48 -0.38 0.56 16 45 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -37.94 395.04 -7.41 -45.35 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -6.41 Total: 13.32 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.95 Total: 5.24 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.16 Total: -62.51 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.18 Total: -23.65 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.94 -7.41 -45.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754097527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.545 kcal (2) G-P(sol) polarization free energy of solvation -37.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds