Wall clock time and date at job start Tue Mar 31 2020 18:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47405 * 2 1 4 4 C 1.50702 * 109.47060 * 239.99685 * 2 1 3 5 5 O 1.21283 * 119.99449 * 240.00061 * 4 2 1 6 6 N 1.34772 * 120.00175 * 59.72636 * 4 2 1 7 7 C 1.46495 * 120.00269 * 180.27673 * 6 4 2 8 8 C 1.50699 * 109.47306 * 180.02562 * 7 6 4 9 9 C 1.30999 * 119.99717 * 127.15727 * 8 7 6 10 10 C 1.50703 * 120.00623 * 7.55595 * 9 8 7 11 11 N 1.46898 * 109.46915 * 127.00480 * 10 9 8 12 12 C 1.46900 * 110.99845 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47297 * 180.02562 * 12 11 10 14 14 O 1.21288 * 120.00018 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99981 * 180.02562 * 13 12 11 16 16 C 1.37098 * 119.99992 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99875 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00175 * 179.97438 * 16 15 13 19 19 N 1.31410 * 119.99760 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00156 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47044 * 60.00143 * 20 18 16 22 22 H 1.48498 * 109.47327 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47166 * 300.00359 * 20 18 16 24 24 N 1.46503 * 109.46869 * 119.99479 * 2 1 3 25 25 C 1.34947 * 126.03943 * 34.72096 * 24 2 1 26 26 C 1.35311 * 107.74797 * 179.83276 * 25 24 2 27 27 C 1.39867 * 107.92087 * 0.42523 * 26 25 24 28 28 N 1.30839 * 108.20218 * 359.73399 * 27 26 25 29 29 H 1.08994 * 109.47058 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47055 * 300.00704 * 1 2 3 31 31 H 1.09005 * 109.46625 * 59.99781 * 1 2 3 32 32 H 0.97004 * 119.99949 * 0.27429 * 6 4 2 33 33 H 1.09005 * 109.46915 * 300.00483 * 7 6 4 34 34 H 1.09003 * 109.47183 * 59.99506 * 7 6 4 35 35 H 1.07995 * 120.00108 * 307.15523 * 8 7 6 36 36 H 1.08003 * 119.99842 * 187.56039 * 9 8 7 37 37 H 1.08992 * 109.47248 * 247.00836 * 10 9 8 38 38 H 1.09004 * 109.46670 * 7.00776 * 10 9 8 39 39 H 1.00899 * 111.00112 * 56.05484 * 11 10 9 40 40 H 1.08999 * 109.47395 * 300.00902 * 12 11 10 41 41 H 1.09005 * 109.46999 * 60.00144 * 12 11 10 42 42 H 0.96999 * 120.00289 * 359.97438 * 15 13 12 43 43 H 0.96999 * 119.99966 * 180.02562 * 19 18 16 44 44 H 1.08003 * 126.11950 * 359.97438 * 25 24 2 45 45 H 1.08002 * 126.03589 * 180.15143 * 26 25 24 46 46 H 1.08002 * 125.89859 * 179.71683 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1190 6 7 1.7022 -0.2534 -2.4545 7 6 2.1855 -0.9475 -3.6506 8 6 1.6792 -0.2400 -4.8811 9 6 2.5191 0.1307 -5.8156 10 6 3.9624 -0.2972 -5.7447 11 7 4.3457 -0.9382 -7.0097 12 6 5.7494 -1.3699 -6.9769 13 6 6.1056 -2.0208 -8.2886 14 8 5.2720 -2.1161 -9.1644 15 7 7.3503 -2.4979 -8.4881 16 6 7.6742 -3.0905 -9.6812 17 1 6.9319 -3.1754 -10.4611 18 6 8.9574 -3.5819 -9.8871 19 7 9.8605 -3.4791 -8.9379 20 14 9.3986 -4.3900 -11.5124 21 1 9.2055 -3.4169 -12.6175 22 1 10.8175 -4.8268 -11.4791 23 1 8.5232 -5.5692 -11.7327 24 7 2.0183 -0.6905 1.1963 25 6 1.4373 -1.7525 1.7928 26 6 2.1966 -2.0927 2.8598 27 6 3.2734 -1.2023 2.9232 28 7 3.1676 -0.3614 1.9264 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.1445 0.5353 -2.5436 33 1 3.2755 -0.9481 -3.6548 34 1 1.8217 -1.9751 -3.6463 35 1 0.6241 -0.0386 -4.9926 36 1 2.1772 0.7431 -6.6369 37 1 4.5922 0.5758 -5.5743 38 1 4.0918 -1.0043 -4.9253 39 1 4.1739 -0.3250 -7.7924 40 1 6.3920 -0.5046 -6.8146 41 1 5.8909 -2.0846 -6.1660 42 1 8.0168 -2.4221 -7.7875 43 1 10.7564 -3.8218 -9.0818 44 1 0.5301 -2.2442 1.4740 45 1 2.0027 -2.9052 3.5444 46 1 4.0568 -1.2079 3.6667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754097527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:33 Heat of formation + Delta-G solvation = 9.529531 kcal Electronic energy + Delta-G solvation = -26988.361068 eV Core-core repulsion = 22914.613316 eV Total energy + Delta-G solvation = -4073.747751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27286 -40.75388 -40.20187 -38.13400 -36.33672 -35.83482 -35.62463 -33.85390 -33.26131 -31.06521 -30.50037 -29.30186 -27.54709 -26.43515 -25.40268 -24.51688 -22.57375 -21.99686 -21.24766 -21.04222 -20.10458 -19.79501 -18.57367 -18.19643 -17.77953 -17.20968 -16.90690 -16.78832 -16.45638 -16.08660 -15.92451 -15.63989 -15.30602 -15.19080 -15.04013 -14.77314 -14.45645 -14.33616 -14.10721 -13.79372 -13.54759 -13.52858 -13.39394 -13.27933 -13.22610 -12.97710 -12.76079 -12.63058 -12.45457 -12.13620 -11.72652 -11.65959 -11.52518 -11.30625 -10.53113 -10.39602 -10.34090 -10.06523 -10.03579 -9.52462 -9.31379 -8.48697 -5.98238 0.80214 1.07066 1.37815 1.38642 1.40511 1.48278 1.52055 1.96865 2.01185 2.25932 2.29276 2.97980 3.18053 3.42144 3.57203 3.61921 3.72568 3.80531 3.97064 4.03367 4.13773 4.20757 4.27097 4.40036 4.42899 4.50310 4.57253 4.61999 4.65262 4.71562 4.73632 4.87905 4.94557 5.09128 5.15009 5.23370 5.38262 5.54865 5.72870 5.76978 5.85151 6.04367 6.05057 6.36236 6.42171 6.56573 6.74898 7.07828 7.09199 7.52305 8.07008 8.68484 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.001651 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.336643 B =16959.298816 C =18265.616695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 H 0.141 0.859 4 C 0.496 3.504 5 O -0.577 6.577 6 N -0.699 5.699 7 C 0.140 3.860 8 C -0.160 4.160 9 C -0.126 4.126 10 C 0.070 3.930 11 N -0.677 5.677 12 C 0.063 3.937 13 C 0.437 3.563 14 O -0.622 6.622 15 N -0.573 5.573 16 C -0.336 4.336 17 H 0.081 0.919 18 C -0.015 4.015 19 N -0.921 5.921 20 Si 0.996 3.004 21 H -0.269 1.269 22 H -0.270 1.270 23 H -0.272 1.272 24 N -0.366 5.366 25 C 0.061 3.939 26 C -0.286 4.286 27 C 0.037 3.963 28 N -0.338 5.338 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.422 0.578 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.151 0.849 36 H 0.132 0.868 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.348 0.652 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.197 0.803 45 H 0.168 0.832 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.938 11.609 23.109 33.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.036 3.964 3 H 0.159 0.841 4 C 0.281 3.719 5 O -0.455 6.455 6 N -0.352 5.352 7 C 0.017 3.983 8 C -0.179 4.179 9 C -0.145 4.145 10 C -0.058 4.058 11 N -0.310 5.310 12 C -0.069 4.069 13 C 0.225 3.775 14 O -0.508 6.508 15 N -0.210 5.210 16 C -0.466 4.466 17 H 0.099 0.901 18 C -0.214 4.214 19 N -0.562 5.562 20 Si 0.819 3.181 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.197 1.197 24 N -0.149 5.149 25 C -0.085 4.085 26 C -0.315 4.315 27 C -0.149 4.149 28 N -0.159 5.159 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.136 0.864 32 H 0.260 0.740 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.169 0.831 36 H 0.149 0.851 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.167 0.833 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.230 0.770 43 H 0.088 0.912 44 H 0.213 0.787 45 H 0.185 0.815 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -21.551 11.246 22.081 32.840 hybrid contribution 1.048 -0.209 -0.253 1.098 sum -20.503 11.037 21.828 31.916 Atomic orbital electron populations 1.22230 0.87114 1.05063 1.06733 1.21373 0.98490 0.97424 0.79064 0.84111 1.21320 0.80105 0.84564 0.85911 1.90787 1.39191 1.28379 1.87181 1.45727 1.53315 1.32310 1.03896 1.20416 0.98978 0.96005 0.82940 1.22761 1.00565 1.00049 0.94525 1.22842 0.93678 0.98136 0.99819 1.21326 0.95045 0.97519 0.91918 1.60087 1.19117 1.46458 1.05315 1.21541 0.90412 1.00078 0.94899 1.20800 0.82411 0.83749 0.90549 1.90481 1.49843 1.63090 1.47403 1.41942 1.10841 1.52269 1.15927 1.19664 0.97157 1.35953 0.93816 0.90130 1.26104 0.94853 0.97797 1.02683 1.69674 1.04984 1.46810 1.34691 0.84945 0.77474 0.78449 0.77204 1.19456 1.19476 1.19726 1.48439 1.19288 1.25356 1.21772 1.22961 1.00577 0.90357 0.94569 1.21861 0.98898 1.06660 1.04118 1.24388 0.99870 0.93647 0.96964 1.77276 1.03704 1.26247 1.08681 0.90805 0.88945 0.86352 0.73988 0.91949 0.91825 0.83124 0.85064 0.93400 0.90284 0.83325 0.91445 0.88414 0.77025 0.91246 0.78651 0.81477 0.77980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 8.72 71.98 0.63 0.16 16 2 C 0.14 1.75 3.73 44.25 0.17 1.92 16 3 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.50 9.21 7.23 87.66 0.63 9.84 16 5 O -0.58 -17.72 16.42 -3.04 -0.05 -17.77 16 6 N -0.70 -8.58 5.44 -466.79 -2.54 -11.12 16 7 C 0.14 2.44 5.76 85.63 0.49 2.93 16 8 C -0.16 -2.16 9.63 25.65 0.25 -1.91 16 9 C -0.13 -2.18 9.77 25.65 0.25 -1.93 16 10 C 0.07 1.62 5.77 85.56 0.49 2.12 16 11 N -0.68 -21.66 6.11 -521.98 -3.19 -24.85 16 12 C 0.06 2.26 6.17 85.56 0.53 2.79 16 13 C 0.44 21.43 7.82 87.66 0.69 22.12 16 14 O -0.62 -35.06 15.78 -3.06 -0.05 -35.11 16 15 N -0.57 -30.27 5.29 -306.98 -1.62 -31.89 16 16 C -0.34 -19.50 9.68 84.04 0.81 -18.69 16 17 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 18 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 19 N -0.92 -50.78 13.05 21.66 0.28 -50.50 16 20 Si 1.00 43.57 29.55 68.60 2.03 45.59 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 N -0.37 -7.05 3.02 -331.05 -1.00 -8.05 16 25 C 0.06 1.00 10.58 83.54 0.88 1.88 16 26 C -0.29 -4.83 10.80 21.99 0.24 -4.59 16 27 C 0.04 0.73 12.03 85.24 1.02 1.75 16 28 N -0.34 -8.18 12.58 -57.02 -0.72 -8.90 16 29 H 0.07 0.27 7.15 -2.39 -0.02 0.26 16 30 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.12 -0.33 7.55 -2.38 -0.02 -0.35 16 32 H 0.42 1.62 7.87 -92.71 -0.73 0.89 16 33 H 0.06 1.39 5.30 -2.38 -0.01 1.38 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.94 5.30 -2.38 -0.01 1.93 16 39 H 0.35 11.26 8.42 -89.70 -0.76 10.50 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 42 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 43 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.20 1.85 7.25 -2.91 -0.02 1.83 16 45 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 46 H 0.20 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -85.44 395.04 -0.49 -85.92 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: -1.18 Total: 38.60 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 7.55 Total: 18.06 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -8.79 Total: -135.30 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -0.10 Total: -52.88 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -85.44 -0.49 -85.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754097527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.450 kcal (2) G-P(sol) polarization free energy of solvation -85.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds