Wall clock time and date at job start Tue Mar 31 2020 18:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47093 * 2 1 4 4 C 1.35031 * 124.88681 * 124.99741 * 3 2 1 5 5 C 1.35366 * 107.23120 * 180.02562 * 4 3 2 6 6 C 1.41494 * 105.50101 * 359.97438 * 5 4 3 7 7 C 1.47716 * 126.51932 * 179.97438 * 6 5 4 8 8 O 1.21573 * 119.99778 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00249 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47298 * 180.02562 * 10 9 7 12 12 H 1.09007 * 112.78705 * 75.80823 * 11 10 9 13 13 C 1.53506 * 113.47762 * 206.61781 * 11 10 9 14 14 C 1.53518 * 83.57441 * 140.79307 * 13 11 10 15 15 N 1.47475 * 113.47524 * 305.00169 * 11 10 9 16 16 C 1.46906 * 111.00135 * 106.52642 * 15 11 10 17 17 C 1.50703 * 109.47109 * 187.49657 * 16 15 11 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99517 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00588 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47149 * 89.99828 * 24 22 20 26 26 H 1.48498 * 109.47388 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46930 * 330.00192 * 24 22 20 28 28 N 1.28467 * 124.88490 * 305.33491 * 3 2 1 29 29 H 1.08996 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47465 * 300.00650 * 1 2 3 31 31 H 1.09006 * 109.46762 * 60.00635 * 1 2 3 32 32 H 1.09000 * 109.47225 * 239.99608 * 2 1 3 33 33 H 1.09000 * 109.46427 * 119.99992 * 2 1 3 34 34 H 1.08007 * 126.38554 * 0.04058 * 4 3 2 35 35 H 1.07994 * 127.24595 * 180.02562 * 5 4 3 36 36 H 0.96998 * 120.00185 * 0.02562 * 9 7 6 37 37 H 1.09004 * 109.47312 * 59.99974 * 10 9 7 38 38 H 1.09003 * 109.47066 * 300.00400 * 10 9 7 39 39 H 1.08996 * 114.17352 * 27.14665 * 13 11 10 40 40 H 1.09000 * 114.34458 * 254.44937 * 13 11 10 41 41 H 1.09001 * 113.47541 * 219.21361 * 14 13 11 42 42 H 1.08993 * 113.53310 * 88.75610 * 14 13 11 43 43 H 1.08992 * 109.47459 * 307.49575 * 16 15 11 44 44 H 1.09004 * 109.47040 * 67.49726 * 16 15 11 45 45 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 46 46 H 0.96997 * 120.00211 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8748 1.8976 0.9074 5 6 3.0823 3.1924 0.5714 6 6 2.3002 3.4125 -0.5871 7 6 2.1847 4.6765 -1.3427 8 8 2.8008 5.6598 -0.9801 9 7 1.3964 4.7396 -2.4340 10 6 1.2824 5.9931 -3.1836 11 6 0.3328 5.7952 -4.3669 12 1 -0.7152 5.7717 -4.0678 13 6 0.6126 6.7438 -5.5409 14 6 0.2943 5.5064 -6.3919 15 7 0.7175 4.6771 -5.2482 16 6 -0.1831 3.5305 -5.0676 17 6 0.3452 2.3501 -5.8413 18 8 1.3712 2.4536 -6.4800 19 7 -0.3225 1.1794 -5.8237 20 6 0.1584 0.1054 -6.5272 21 1 1.0719 0.1975 -7.0958 22 6 -0.5297 -1.1016 -6.5085 23 7 -0.0691 -2.1309 -7.1832 24 14 -2.1094 -1.2612 -5.5244 25 1 -3.2660 -0.9000 -6.3829 26 1 -2.2603 -2.6616 -5.0540 27 1 -2.0577 -0.3487 -4.3540 28 7 1.6887 2.2771 -0.8597 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.3127 1.3749 1.7449 35 1 3.7127 3.9066 1.0799 36 1 0.9046 3.9552 -2.7231 37 1 2.2655 6.2872 -3.5515 38 1 0.8908 6.7728 -2.5303 39 1 1.6481 7.0774 -5.6081 40 1 -0.1084 7.5546 -5.6451 41 1 0.9383 5.4027 -7.2652 42 1 -0.7635 5.4051 -6.6340 43 1 -0.2391 3.2756 -4.0094 44 1 -1.1774 3.7885 -5.4323 45 1 -1.1428 1.0966 -5.3126 46 1 -0.5496 -2.9735 -7.1705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754496935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:35 Heat of formation + Delta-G solvation = 57.688020 kcal Electronic energy + Delta-G solvation = -29344.740665 eV Core-core repulsion = 25273.081222 eV Total energy + Delta-G solvation = -4071.659443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.69225 -40.50395 -39.00523 -37.92036 -34.68937 -34.47995 -33.93860 -31.72928 -31.05032 -30.73689 -30.18594 -28.31470 -25.95856 -24.96881 -23.58197 -23.18226 -21.99325 -21.45484 -20.09401 -19.57583 -19.38161 -18.37210 -18.00628 -16.76166 -16.20038 -16.14829 -16.03417 -15.51238 -15.15995 -14.93838 -14.79738 -14.56510 -14.29471 -13.82205 -13.78068 -13.55722 -13.26089 -13.18355 -12.77074 -12.62456 -12.57171 -12.33867 -12.22634 -11.95093 -11.63362 -11.59936 -11.41979 -11.20457 -10.93523 -10.86403 -10.62614 -10.59486 -10.02981 -9.98518 -9.56731 -9.34273 -9.14675 -8.92950 -8.86247 -8.33242 -8.17675 -6.31515 -3.82425 1.61438 2.09181 2.34807 2.98350 3.03047 3.10989 3.19419 3.52450 3.73501 3.90160 4.08176 4.18975 4.38740 4.63629 4.65680 4.68729 4.72129 4.80268 4.93766 4.96248 5.11868 5.17618 5.27095 5.33682 5.38517 5.40239 5.50362 5.51801 5.58963 5.63048 5.68676 5.75342 5.86820 5.88675 5.88841 5.98255 6.15103 6.32830 6.37751 6.55921 6.68747 7.08645 7.52783 7.57776 7.90484 8.14450 8.29896 8.60500 8.95699 9.42445 9.84963 10.81900 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007439 B = 0.004872 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.820963 B = 5745.455833 C = 8810.445332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.114 3.886 3 N -0.277 5.277 4 C -0.023 4.023 5 C -0.181 4.181 6 C -0.022 4.022 7 C 0.606 3.394 8 O -0.541 6.541 9 N -0.709 5.709 10 C 0.141 3.859 11 C 0.004 3.996 12 H 0.083 0.917 13 C -0.132 4.132 14 C 0.004 3.996 15 N -0.432 5.432 16 C 0.004 3.996 17 C 0.458 3.542 18 O -0.553 6.553 19 N -0.594 5.594 20 C -0.301 4.301 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.883 5.883 24 Si 0.877 3.123 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.269 1.269 28 N -0.251 5.251 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.407 0.593 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.369 0.631 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 9.963 16.506 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.006 4.006 3 N -0.066 5.066 4 C -0.165 4.165 5 C -0.209 4.209 6 C -0.182 4.182 7 C 0.391 3.609 8 O -0.417 6.417 9 N -0.361 5.361 10 C 0.017 3.983 11 C -0.106 4.106 12 H 0.101 0.899 13 C -0.170 4.170 14 C -0.125 4.125 15 N -0.155 5.155 16 C -0.128 4.128 17 C 0.243 3.757 18 O -0.433 6.433 19 N -0.234 5.234 20 C -0.429 4.429 21 H 0.136 0.864 22 C -0.162 4.162 23 N -0.524 5.524 24 Si 0.704 3.296 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 N -0.088 5.088 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.198 0.802 35 H 0.178 0.822 36 H 0.243 0.757 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.201 0.799 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.882 9.562 15.519 18.325 hybrid contribution -1.884 -0.479 1.212 2.291 sum -3.766 9.083 16.731 19.406 Atomic orbital electron populations 1.22078 0.93017 1.03664 1.03817 1.22080 0.96863 0.76569 1.05080 1.45663 1.32022 1.10387 1.18578 1.22865 0.99600 0.95395 0.98636 1.21726 1.04691 0.96106 0.98346 1.21918 1.03279 0.93274 0.99722 1.16867 0.78879 0.85445 0.79705 1.90763 1.46229 1.35842 1.68896 1.45784 1.47704 1.14984 1.27594 1.21356 1.00048 0.85820 0.91101 1.23790 0.98414 0.94119 0.94321 0.89947 1.23153 1.03214 0.96129 0.94538 1.23759 1.00114 0.91920 0.96677 1.68871 1.42759 1.00545 1.03305 1.22608 0.95367 0.93990 1.00859 1.19496 0.86616 0.83548 0.86077 1.90579 1.24541 1.83214 1.44992 1.42200 1.24036 1.11003 1.46168 1.19419 1.10403 0.87556 1.25569 0.86357 1.25012 0.98187 0.95333 0.97626 1.69623 1.39462 1.02180 1.41100 0.86709 0.84021 0.78489 0.80399 1.19706 1.20230 1.19500 1.73523 1.21996 0.97905 1.15341 0.90064 0.92046 0.90514 0.88280 0.87878 0.80223 0.82177 0.75652 0.90490 0.91055 0.88434 0.90364 0.89004 0.91393 0.89886 0.92043 0.79891 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.01 37.16 0.37 -1.10 16 2 C 0.11 0.99 7.12 -4.04 -0.03 0.96 16 3 N -0.28 -3.29 3.41 -61.33 -0.21 -3.50 16 4 C -0.02 -0.23 11.40 -17.17 -0.20 -0.43 16 5 C -0.18 -2.29 10.81 -39.37 -0.43 -2.71 16 6 C -0.02 -0.34 7.13 -82.77 -0.59 -0.93 16 7 C 0.61 9.89 7.83 -12.39 -0.10 9.79 16 8 O -0.54 -9.85 16.93 5.30 0.09 -9.76 16 9 N -0.71 -10.48 5.46 -61.29 -0.33 -10.81 16 10 C 0.14 1.79 5.81 -4.04 -0.02 1.77 16 11 C 0.00 0.04 3.25 -71.44 -0.23 -0.19 16 12 H 0.08 0.82 7.91 -51.92 -0.41 0.41 16 13 C -0.13 -1.35 8.00 -26.20 -0.21 -1.56 16 14 C 0.00 0.06 7.69 -7.55 -0.06 0.00 16 15 N -0.43 -6.79 5.39 -237.96 -1.28 -8.07 16 16 C 0.00 0.07 5.04 -4.97 -0.03 0.04 16 17 C 0.46 10.47 7.83 -10.98 -0.09 10.39 16 18 O -0.55 -15.18 16.01 5.54 0.09 -15.09 16 19 N -0.59 -14.08 5.09 -10.96 -0.06 -14.13 16 20 C -0.30 -8.47 10.16 -14.93 -0.15 -8.63 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 24 Si 0.88 18.99 27.74 -169.99 -4.71 14.28 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.27 -5.26 6.52 56.52 0.37 -4.90 16 28 N -0.25 -3.75 11.35 33.42 0.38 -3.37 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.52 8.04 -51.93 -0.42 0.10 16 34 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.41 6.13 5.92 -40.82 -0.24 5.89 16 37 H 0.08 1.06 7.88 -51.93 -0.41 0.65 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.00 7.94 -51.93 -0.41 0.59 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.07 0.81 7.44 -51.93 -0.39 0.43 16 43 H 0.08 1.24 6.25 -51.93 -0.32 0.92 16 44 H 0.06 0.86 7.35 -51.93 -0.38 0.48 16 45 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -37.05 386.87 -7.86 -44.91 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -6.58 Total: 16.14 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -1.85 Total: 8.42 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.73 Total: -64.73 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: 0.18 Total: -24.85 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.05 -7.86 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754496935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.596 kcal (2) G-P(sol) polarization free energy of solvation -37.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds