Wall clock time and date at job start Tue Mar 31 2020 18:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47093 * 2 1 4 4 C 1.35031 * 124.88681 * 124.99741 * 3 2 1 5 5 C 1.35366 * 107.23120 * 180.02562 * 4 3 2 6 6 C 1.41494 * 105.50101 * 359.97438 * 5 4 3 7 7 C 1.47716 * 126.51932 * 179.97438 * 6 5 4 8 8 O 1.21573 * 119.99778 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00249 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47298 * 180.02562 * 10 9 7 12 12 H 1.09007 * 112.78705 * 75.80823 * 11 10 9 13 13 C 1.53506 * 113.47762 * 206.61781 * 11 10 9 14 14 C 1.53518 * 83.57441 * 140.79307 * 13 11 10 15 15 N 1.47475 * 113.47524 * 305.00169 * 11 10 9 16 16 C 1.46906 * 111.00135 * 106.52642 * 15 11 10 17 17 C 1.50703 * 109.47109 * 187.49657 * 16 15 11 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99517 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00588 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47149 * 89.99828 * 24 22 20 26 26 H 1.48498 * 109.47388 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46930 * 330.00192 * 24 22 20 28 28 N 1.28467 * 124.88490 * 305.33491 * 3 2 1 29 29 H 1.08996 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47465 * 300.00650 * 1 2 3 31 31 H 1.09006 * 109.46762 * 60.00635 * 1 2 3 32 32 H 1.09000 * 109.47225 * 239.99608 * 2 1 3 33 33 H 1.09000 * 109.46427 * 119.99992 * 2 1 3 34 34 H 1.08007 * 126.38554 * 0.04058 * 4 3 2 35 35 H 1.07994 * 127.24595 * 180.02562 * 5 4 3 36 36 H 0.96998 * 120.00185 * 0.02562 * 9 7 6 37 37 H 1.09004 * 109.47312 * 59.99974 * 10 9 7 38 38 H 1.09003 * 109.47066 * 300.00400 * 10 9 7 39 39 H 1.08996 * 114.17352 * 27.14665 * 13 11 10 40 40 H 1.09000 * 114.34458 * 254.44937 * 13 11 10 41 41 H 1.09001 * 113.47541 * 219.21361 * 14 13 11 42 42 H 1.08993 * 113.53310 * 88.75610 * 14 13 11 43 43 H 1.08992 * 109.47459 * 307.49575 * 16 15 11 44 44 H 1.09004 * 109.47040 * 67.49726 * 16 15 11 45 45 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 46 46 H 0.96997 * 120.00211 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8748 1.8976 0.9074 5 6 3.0823 3.1924 0.5714 6 6 2.3002 3.4125 -0.5871 7 6 2.1847 4.6765 -1.3427 8 8 2.8008 5.6598 -0.9801 9 7 1.3964 4.7396 -2.4340 10 6 1.2824 5.9931 -3.1836 11 6 0.3328 5.7952 -4.3669 12 1 -0.7152 5.7717 -4.0678 13 6 0.6126 6.7438 -5.5409 14 6 0.2943 5.5064 -6.3919 15 7 0.7175 4.6771 -5.2482 16 6 -0.1831 3.5305 -5.0676 17 6 0.3452 2.3501 -5.8413 18 8 1.3712 2.4536 -6.4800 19 7 -0.3225 1.1794 -5.8237 20 6 0.1584 0.1054 -6.5272 21 1 1.0719 0.1975 -7.0958 22 6 -0.5297 -1.1016 -6.5085 23 7 -0.0691 -2.1309 -7.1832 24 14 -2.1094 -1.2612 -5.5244 25 1 -3.2660 -0.9000 -6.3829 26 1 -2.2603 -2.6616 -5.0540 27 1 -2.0577 -0.3487 -4.3540 28 7 1.6887 2.2771 -0.8597 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.3127 1.3749 1.7449 35 1 3.7127 3.9066 1.0799 36 1 0.9046 3.9552 -2.7231 37 1 2.2655 6.2872 -3.5515 38 1 0.8908 6.7728 -2.5303 39 1 1.6481 7.0774 -5.6081 40 1 -0.1084 7.5546 -5.6451 41 1 0.9383 5.4027 -7.2652 42 1 -0.7635 5.4051 -6.6340 43 1 -0.2391 3.2756 -4.0094 44 1 -1.1774 3.7885 -5.4323 45 1 -1.1428 1.0966 -5.3126 46 1 -0.5496 -2.9735 -7.1705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754496935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:34 Heat of formation + Delta-G solvation = 26.267788 kcal Electronic energy + Delta-G solvation = -29346.103149 eV Core-core repulsion = 25273.081222 eV Total energy + Delta-G solvation = -4073.021926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.61611 -41.63321 -40.27939 -39.67411 -36.00932 -35.62937 -35.46457 -33.77902 -32.26344 -31.74453 -31.07201 -29.33671 -27.64096 -25.88804 -25.20280 -24.09910 -22.95212 -22.36251 -21.32564 -21.11784 -20.54352 -20.29492 -18.95083 -17.75174 -17.71170 -17.30956 -17.06230 -16.84747 -16.68387 -16.38877 -15.99962 -15.57589 -15.32979 -15.23124 -14.98273 -14.77186 -14.54072 -14.40983 -14.16846 -14.05393 -13.95843 -13.33064 -13.10376 -13.00595 -12.95619 -12.65561 -12.44760 -12.35799 -12.31823 -12.04242 -11.94220 -11.82111 -11.69930 -11.51641 -11.20269 -10.47419 -10.34864 -10.25035 -10.13028 -9.94561 -9.73746 -8.41459 -6.02301 0.53526 1.21830 1.27773 1.33691 1.42587 1.54753 1.94278 2.13186 2.21880 2.37812 2.64292 3.13532 3.20066 3.35548 3.52348 3.77272 3.82937 3.96702 4.02141 4.02262 4.09547 4.21866 4.25833 4.30111 4.33429 4.38331 4.40118 4.62516 4.71675 4.77272 4.79018 4.83966 4.85670 4.88354 5.01890 5.19751 5.20853 5.28746 5.38423 5.47454 5.53305 5.91052 5.91583 6.05970 6.37253 6.59324 6.88204 6.90021 7.13418 7.38889 7.97420 8.76551 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007439 B = 0.004872 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.820963 B = 5745.455833 C = 8810.445332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.278 5.278 4 C 0.000 4.000 5 C -0.203 4.203 6 C -0.053 4.053 7 C 0.599 3.401 8 O -0.571 6.571 9 N -0.706 5.706 10 C 0.137 3.863 11 C 0.016 3.984 12 H 0.114 0.886 13 C -0.111 4.111 14 C -0.004 4.004 15 N -0.476 5.476 16 C 0.019 3.981 17 C 0.454 3.546 18 O -0.609 6.609 19 N -0.591 5.591 20 C -0.326 4.326 21 H 0.051 0.949 22 C -0.013 4.013 23 N -0.935 5.935 24 Si 0.963 3.037 25 H -0.258 1.258 26 H -0.272 1.272 27 H -0.231 1.231 28 N -0.281 5.281 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.230 0.770 35 H 0.168 0.832 36 H 0.405 0.595 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.388 0.612 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 10.442 19.695 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.067 5.067 4 C -0.142 4.142 5 C -0.231 4.231 6 C -0.211 4.211 7 C 0.385 3.615 8 O -0.449 6.449 9 N -0.357 5.357 10 C 0.014 3.986 11 C -0.094 4.094 12 H 0.131 0.869 13 C -0.149 4.149 14 C -0.133 4.133 15 N -0.199 5.199 16 C -0.113 4.113 17 C 0.241 3.759 18 O -0.492 6.492 19 N -0.233 5.233 20 C -0.456 4.456 21 H 0.069 0.931 22 C -0.212 4.212 23 N -0.576 5.576 24 Si 0.782 3.218 25 H -0.182 1.182 26 H -0.197 1.197 27 H -0.155 1.155 28 N -0.119 5.119 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.167 0.833 34 H 0.246 0.754 35 H 0.185 0.815 36 H 0.241 0.759 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.224 0.776 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.895 10.063 18.700 21.793 hybrid contribution -0.806 -0.684 0.149 1.068 sum -5.701 9.379 18.849 21.812 Atomic orbital electron populations 1.22054 0.93037 1.04511 1.02668 1.22442 0.96972 0.75169 1.06750 1.46062 1.31724 1.10881 1.18047 1.23554 0.97611 0.94504 0.98557 1.22004 1.05246 0.97716 0.98129 1.22005 1.04904 0.93228 1.01003 1.17163 0.78637 0.85709 0.79998 1.90724 1.47482 1.36907 1.69829 1.45849 1.47085 1.15524 1.27203 1.21508 0.99765 0.85556 0.91765 1.23868 0.99523 0.92449 0.93522 0.86853 1.23093 1.03966 0.95806 0.92066 1.23861 1.00610 0.93266 0.95514 1.68822 1.43862 1.01592 1.05602 1.22508 0.96684 0.91512 1.00609 1.20795 0.85474 0.84681 0.84930 1.90552 1.27094 1.84338 1.47237 1.42013 1.24849 1.10274 1.46173 1.18963 1.09336 0.90169 1.27098 0.93106 1.26089 1.02804 0.93814 0.98458 1.69811 1.41851 1.03137 1.42785 0.85400 0.77327 0.79491 0.79543 1.18217 1.19653 1.15457 1.73454 1.23110 0.98413 1.16875 0.88191 0.91369 0.93416 0.89500 0.83337 0.75399 0.81496 0.75851 0.92258 0.89172 0.89069 0.86621 0.91959 0.89380 0.87988 0.88353 0.77647 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.01 71.98 0.72 -1.77 16 2 C 0.10 1.55 7.12 86.38 0.61 2.16 16 3 N -0.28 -6.07 3.41 -347.94 -1.19 -7.26 16 4 C 0.00 0.01 11.40 83.54 0.95 0.96 16 5 C -0.20 -4.96 10.81 22.41 0.24 -4.72 16 6 C -0.05 -1.62 7.13 42.46 0.30 -1.32 16 7 C 0.60 19.86 7.83 86.75 0.68 20.54 16 8 O -0.57 -21.23 16.93 -3.95 -0.07 -21.30 16 9 N -0.71 -20.68 5.46 -466.09 -2.54 -23.23 16 10 C 0.14 3.34 5.81 86.38 0.50 3.85 16 11 C 0.02 0.33 3.25 42.18 0.14 0.46 16 12 H 0.11 1.72 7.91 -2.38 -0.02 1.71 16 13 C -0.11 -1.99 8.00 30.94 0.25 -1.74 16 14 C 0.00 -0.10 7.69 83.57 0.64 0.54 16 15 N -0.48 -14.48 5.39 -906.76 -4.89 -19.37 16 16 C 0.02 0.59 5.04 85.56 0.43 1.02 16 17 C 0.45 21.15 7.83 87.66 0.69 21.83 16 18 O -0.61 -35.36 16.01 -3.08 -0.05 -35.41 16 19 N -0.59 -28.21 5.09 -306.98 -1.56 -29.77 16 20 C -0.33 -19.30 10.16 84.04 0.85 -18.44 16 21 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.94 -56.20 13.96 21.66 0.30 -55.90 16 24 Si 0.96 38.05 27.74 68.60 1.90 39.95 16 25 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 26 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 27 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 28 N -0.28 -8.27 11.35 -48.18 -0.55 -8.82 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 1.00 8.08 -2.38 -0.02 0.98 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.15 0.82 8.04 -2.39 -0.02 0.80 16 34 H 0.23 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.41 12.01 5.92 -92.71 -0.55 11.46 16 37 H 0.06 1.65 7.88 -2.38 -0.02 1.63 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.09 1.76 7.94 -2.39 -0.02 1.74 16 40 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.09 1.86 7.44 -2.39 -0.02 1.84 16 43 H 0.10 2.82 6.25 -2.39 -0.01 2.80 16 44 H 0.10 2.38 7.35 -2.38 -0.02 2.36 16 45 H 0.39 15.27 5.76 -92.71 -0.53 14.73 16 46 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -90.67 386.87 -1.28 -91.95 By element: Atomic # 1 Polarization: 46.17 SS G_CDS: -0.12 Total: 46.05 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 7.48 Total: 23.10 kcal Atomic # 7 Polarization: -133.92 SS G_CDS: -10.42 Total: -144.34 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -0.12 Total: -56.70 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.90 Total: 39.95 kcal Total: -90.67 -1.28 -91.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754496935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.220 kcal (2) G-P(sol) polarization free energy of solvation -90.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds