Wall clock time and date at job start Tue Mar 31 2020 20:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46506 * 109.46772 * 2 1 4 4 C 1.36938 * 119.99582 * 274.22140 * 3 2 1 5 5 H 1.08003 * 119.99571 * 182.70219 * 4 3 2 6 6 C 1.38807 * 120.00348 * 2.70294 * 4 3 2 7 7 N 1.31621 * 120.00172 * 18.01780 * 6 4 3 8 8 Si 1.86804 * 120.00002 * 198.01674 * 6 4 3 9 9 H 1.48498 * 109.47128 * 59.99641 * 8 6 4 10 10 H 1.48494 * 109.47290 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47104 * 300.00262 * 8 6 4 12 12 C 1.46495 * 119.99745 * 94.22421 * 3 2 1 13 13 C 1.53000 * 109.47327 * 84.57611 * 12 3 2 14 14 C 1.53076 * 109.45453 * 67.29421 * 13 12 3 15 15 C 1.53187 * 109.29376 * 181.24462 * 14 13 12 16 16 N 1.46926 * 108.89438 * 305.57682 * 15 14 13 17 17 C 1.34775 * 120.63139 * 233.51509 * 16 15 14 18 18 O 1.21528 * 119.99990 * 356.77784 * 17 16 15 19 19 C 1.48003 * 119.99826 * 176.77504 * 17 16 15 20 20 C 1.39908 * 120.94170 * 33.59839 * 19 17 16 21 21 C 1.38034 * 119.03400 * 180.02562 * 20 19 17 22 22 N 1.31860 * 120.98210 * 0.02567 * 21 20 19 23 23 C 1.31716 * 122.09590 * 359.97225 * 22 21 20 24 24 C 1.38541 * 120.84672 * 359.72482 * 23 22 21 25 25 F 1.35102 * 120.53885 * 180.28376 * 24 23 22 26 26 C 1.46930 * 118.73698 * 53.54178 * 16 15 14 27 27 C 1.53033 * 109.45928 * 187.50842 * 13 12 3 28 28 H 1.08998 * 109.47003 * 298.77004 * 1 2 3 29 29 H 1.08991 * 109.47280 * 58.77932 * 1 2 3 30 30 H 1.09010 * 109.46521 * 178.77828 * 1 2 3 31 31 H 1.08997 * 109.46763 * 240.00289 * 2 1 3 32 32 H 1.08995 * 109.47727 * 120.00042 * 2 1 3 33 33 H 0.97002 * 119.99825 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46956 * 324.56914 * 12 3 2 35 35 H 1.09005 * 109.46716 * 204.57620 * 12 3 2 36 36 H 1.09003 * 109.44261 * 307.47552 * 13 12 3 37 37 H 1.09001 * 109.38659 * 61.36759 * 14 13 12 38 38 H 1.09003 * 109.61945 * 301.26143 * 14 13 12 39 39 H 1.09000 * 109.58460 * 185.71795 * 15 14 13 40 40 H 1.09002 * 109.58625 * 65.43951 * 15 14 13 41 41 H 1.08000 * 120.47806 * 0.02655 * 20 19 17 42 42 H 1.07998 * 119.50785 * 180.02562 * 21 20 19 43 43 H 1.08004 * 119.58031 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.58786 * 66.17609 * 26 16 15 45 45 H 1.09003 * 109.58543 * 186.46236 * 26 16 15 46 46 H 1.09003 * 109.49736 * 58.66155 * 27 13 12 47 47 H 1.08997 * 109.52775 * 298.58087 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1642 2.0559 -1.1828 5 1 2.5653 3.0587 -1.1865 6 6 1.7966 1.4509 -2.3767 7 7 0.9974 0.4051 -2.3660 8 14 2.4360 2.1210 -3.9990 9 1 3.9198 2.0617 -4.0086 10 1 1.9012 1.3037 -5.1174 11 1 1.9960 3.5301 -4.1603 12 6 2.3505 2.0407 1.2653 13 6 3.7818 1.6800 1.6680 14 6 4.7640 2.3041 0.6735 15 6 6.1937 1.9150 1.0622 16 7 6.4260 2.2943 2.4625 17 6 7.4806 3.0626 2.8000 18 8 8.2828 3.3999 1.9517 19 6 7.6617 3.4955 4.2036 20 6 7.2756 2.6712 5.2662 21 6 7.4621 3.1146 6.5600 22 7 7.9949 4.2961 6.8025 23 6 8.3731 5.1053 5.8344 24 6 8.2291 4.7396 4.5059 25 9 8.6244 5.5721 3.5180 26 6 5.4870 1.8195 3.4880 27 6 4.0652 2.2124 3.0745 28 1 -0.3633 0.4946 0.9008 29 1 -0.3633 0.5326 -0.8788 30 1 -0.3633 -1.0276 -0.0219 31 1 1.8933 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 0.7409 -0.0178 -3.2004 34 1 1.6601 1.7082 2.0404 35 1 2.2683 3.1209 1.1445 36 1 3.8990 0.5963 1.6594 37 1 4.6628 3.3892 0.6977 38 1 4.5482 1.9404 -0.3312 39 1 6.9021 2.4379 0.4196 40 1 6.3231 0.8387 0.9487 41 1 6.8381 1.7022 5.0767 42 1 7.1672 2.4844 7.3860 43 1 8.8054 6.0642 6.0794 44 1 5.5563 0.7349 3.5730 45 1 5.7307 2.2774 4.4467 46 1 3.3504 1.7834 3.7767 47 1 3.9722 3.2984 3.0786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755182983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:51 Heat of formation + Delta-G solvation = 10.544542 kcal Electronic energy + Delta-G solvation = -29656.523833 eV Core-core repulsion = 25562.900134 eV Total energy + Delta-G solvation = -4093.623699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.26613 -41.11744 -39.62360 -37.79502 -35.96522 -33.91726 -32.83183 -31.45061 -30.87723 -30.69829 -29.18365 -27.01165 -25.36472 -24.34584 -23.76142 -22.86931 -22.43625 -21.03639 -20.08450 -19.18683 -18.04766 -17.85167 -17.47193 -16.63164 -16.44252 -16.01667 -15.51482 -15.25695 -15.16327 -14.86548 -14.27840 -13.98036 -13.87649 -13.84982 -13.69802 -13.46531 -13.32727 -12.96784 -12.92116 -12.56275 -12.05714 -11.84005 -11.65578 -11.29059 -11.15393 -10.93099 -10.77072 -10.57791 -10.50188 -10.44787 -10.33990 -10.24504 -10.09766 -9.80890 -9.70164 -9.55135 -9.40352 -9.34839 -8.71090 -8.29568 -6.85279 -5.67029 -3.05704 0.19675 0.40253 2.46063 2.73095 3.19245 3.39543 3.46202 3.47865 3.52180 3.88423 3.97824 4.19790 4.28704 4.49420 4.72142 4.79222 4.98606 5.01045 5.15104 5.23864 5.25612 5.29109 5.38213 5.42235 5.49414 5.61342 5.77341 5.86018 6.00100 6.03377 6.07478 6.14596 6.31038 6.44907 6.50559 6.60966 6.66217 6.92697 6.94237 7.01800 7.12270 7.20930 7.26879 7.29557 7.67524 7.88402 7.90009 8.24444 8.39834 9.29759 9.90659 10.33936 11.30232 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.002906 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.828666 B = 9631.625054 C =10622.177907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.171 3.829 3 N -0.601 5.601 4 C -0.238 4.238 5 H 0.073 0.927 6 C -0.008 4.008 7 N -0.903 5.903 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.287 1.287 12 C 0.159 3.841 13 C -0.107 4.107 14 C -0.120 4.120 15 C 0.111 3.889 16 N -0.592 5.592 17 C 0.554 3.446 18 O -0.524 6.524 19 C -0.117 4.117 20 C -0.128 4.128 21 C 0.083 3.917 22 N -0.444 5.444 23 C 0.073 3.927 24 C 0.101 3.899 25 F -0.110 7.110 26 C 0.075 3.925 27 C -0.129 4.129 28 H 0.001 0.999 29 H 0.095 0.905 30 H 0.015 0.985 31 H 0.089 0.911 32 H -0.002 1.002 33 H 0.249 0.751 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.168 0.832 42 H 0.172 0.828 43 H 0.175 0.825 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.782 2.529 18.363 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.047 3.953 3 N -0.323 5.323 4 C -0.367 4.367 5 H 0.091 0.909 6 C -0.204 4.204 7 N -0.551 5.551 8 Si 0.727 3.273 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.213 1.213 12 C 0.031 3.969 13 C -0.128 4.128 14 C -0.158 4.158 15 C -0.010 4.010 16 N -0.325 5.325 17 C 0.341 3.659 18 O -0.400 6.400 19 C -0.129 4.129 20 C -0.148 4.148 21 C -0.073 4.073 22 N -0.153 5.153 23 C -0.087 4.087 24 C 0.078 3.922 25 F -0.088 7.088 26 C -0.047 4.047 27 C -0.168 4.168 28 H 0.020 0.980 29 H 0.113 0.887 30 H 0.034 0.966 31 H 0.107 0.893 32 H 0.016 0.984 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.185 0.815 42 H 0.189 0.811 43 H 0.192 0.808 44 H 0.094 0.906 45 H 0.119 0.881 46 H 0.092 0.908 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.242 2.891 18.525 21.861 hybrid contribution 0.075 0.162 -1.902 1.910 sum 11.317 3.053 16.623 20.340 Atomic orbital electron populations 1.22448 0.99278 0.98070 1.00460 1.20891 0.92517 0.84323 0.97616 1.44177 1.75776 1.11313 1.01043 1.19255 1.35121 0.98346 0.83956 0.90927 1.24724 0.99446 0.98650 0.97556 1.70206 1.35373 1.24705 1.24821 0.86427 0.78968 0.77908 0.83949 1.21267 1.21795 1.21348 1.20700 0.91440 0.96216 0.88551 1.21854 0.98943 0.99940 0.92074 1.21928 0.91441 1.00482 1.01927 1.21859 0.99032 1.00248 0.79911 1.48051 1.25055 1.49679 1.09676 1.17922 0.82074 0.79119 0.86790 1.90832 1.43088 1.55843 1.50241 1.20621 1.01488 0.94980 0.95763 1.22807 0.97712 1.01790 0.92462 1.22868 0.95701 0.92806 0.95933 1.67589 1.08064 1.04096 1.35502 1.22983 0.98987 1.00715 0.85971 1.18877 0.97778 0.88545 0.87003 1.91614 1.87492 1.69421 1.60249 1.22737 0.90155 0.99895 0.91948 1.21964 0.94584 1.01545 0.98687 0.98036 0.88656 0.96553 0.89266 0.98395 0.93989 0.94935 0.93727 0.91590 0.92597 0.87952 0.89305 0.91253 0.81528 0.81125 0.80831 0.90627 0.88091 0.90800 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.53 37.16 0.35 -2.95 16 2 C 0.17 3.97 5.70 -4.04 -0.02 3.94 16 3 N -0.60 -13.81 2.36 -173.24 -0.41 -14.22 16 4 C -0.24 -6.04 8.14 -15.06 -0.12 -6.16 16 5 H 0.07 1.83 7.87 -52.48 -0.41 1.42 16 6 C -0.01 -0.21 5.17 -17.43 -0.09 -0.30 16 7 N -0.90 -24.42 7.60 55.49 0.42 -24.00 16 8 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.16 2.96 5.09 -4.04 -0.02 2.94 16 13 C -0.11 -1.63 2.33 -90.56 -0.21 -1.84 16 14 C -0.12 -1.95 5.08 -26.60 -0.13 -2.08 16 15 C 0.11 1.61 6.42 -3.71 -0.02 1.58 16 16 N -0.59 -7.63 2.97 -173.82 -0.52 -8.14 16 17 C 0.55 7.90 7.40 -12.26 -0.09 7.81 16 18 O -0.52 -9.43 15.56 5.34 0.08 -9.35 16 19 C -0.12 -1.31 5.55 -104.59 -0.58 -1.89 16 20 C -0.13 -0.97 7.57 -39.03 -0.30 -1.27 16 21 C 0.08 0.57 11.17 -17.61 -0.20 0.37 16 22 N -0.44 -3.90 10.33 -13.25 -0.14 -4.04 16 23 C 0.07 0.64 11.17 -17.49 -0.20 0.45 16 24 C 0.10 1.13 7.29 -38.80 -0.28 0.85 16 25 F -0.11 -1.47 16.22 2.25 0.04 -1.43 16 26 C 0.07 0.72 5.04 -3.71 -0.02 0.70 16 27 C -0.13 -1.49 5.36 -26.61 -0.14 -1.63 16 28 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 29 H 0.10 2.51 6.02 -51.93 -0.31 2.20 16 30 H 0.02 0.34 8.14 -51.92 -0.42 -0.09 16 31 H 0.09 2.32 5.92 -51.93 -0.31 2.01 16 32 H 0.00 -0.05 8.04 -51.93 -0.42 -0.46 16 33 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.03 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.04 0.85 7.98 -51.93 -0.41 0.44 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.98 6.62 -51.93 -0.34 1.64 16 39 H 0.09 1.41 7.02 -51.93 -0.36 1.04 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.17 0.90 5.43 -52.49 -0.29 0.61 16 42 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.17 1.07 8.06 -52.48 -0.42 0.64 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.76 3.46 -52.79 -0.18 0.58 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -30.56 370.01 -8.88 -39.43 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.82 Total: -0.52 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.08 Total: 0.51 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.64 Total: -50.39 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.56 -8.88 -39.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755182983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.977 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds