Wall clock time and date at job start Tue Mar 31 2020 20:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46506 * 109.46772 * 2 1 4 4 C 1.36938 * 119.99582 * 274.22140 * 3 2 1 5 5 H 1.08003 * 119.99571 * 182.70219 * 4 3 2 6 6 C 1.38807 * 120.00348 * 2.70294 * 4 3 2 7 7 N 1.31621 * 120.00172 * 18.01780 * 6 4 3 8 8 Si 1.86804 * 120.00002 * 198.01674 * 6 4 3 9 9 H 1.48498 * 109.47128 * 59.99641 * 8 6 4 10 10 H 1.48494 * 109.47290 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47104 * 300.00262 * 8 6 4 12 12 C 1.46495 * 119.99745 * 94.22421 * 3 2 1 13 13 C 1.53000 * 109.47327 * 84.57611 * 12 3 2 14 14 C 1.53076 * 109.45453 * 67.29421 * 13 12 3 15 15 C 1.53187 * 109.29376 * 181.24462 * 14 13 12 16 16 N 1.46926 * 108.89438 * 305.57682 * 15 14 13 17 17 C 1.34775 * 120.63139 * 233.51509 * 16 15 14 18 18 O 1.21528 * 119.99990 * 356.77784 * 17 16 15 19 19 C 1.48003 * 119.99826 * 176.77504 * 17 16 15 20 20 C 1.39908 * 120.94170 * 33.59839 * 19 17 16 21 21 C 1.38034 * 119.03400 * 180.02562 * 20 19 17 22 22 N 1.31860 * 120.98210 * 0.02567 * 21 20 19 23 23 C 1.31716 * 122.09590 * 359.97225 * 22 21 20 24 24 C 1.38541 * 120.84672 * 359.72482 * 23 22 21 25 25 F 1.35102 * 120.53885 * 180.28376 * 24 23 22 26 26 C 1.46930 * 118.73698 * 53.54178 * 16 15 14 27 27 C 1.53033 * 109.45928 * 187.50842 * 13 12 3 28 28 H 1.08998 * 109.47003 * 298.77004 * 1 2 3 29 29 H 1.08991 * 109.47280 * 58.77932 * 1 2 3 30 30 H 1.09010 * 109.46521 * 178.77828 * 1 2 3 31 31 H 1.08997 * 109.46763 * 240.00289 * 2 1 3 32 32 H 1.08995 * 109.47727 * 120.00042 * 2 1 3 33 33 H 0.97002 * 119.99825 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46956 * 324.56914 * 12 3 2 35 35 H 1.09005 * 109.46716 * 204.57620 * 12 3 2 36 36 H 1.09003 * 109.44261 * 307.47552 * 13 12 3 37 37 H 1.09001 * 109.38659 * 61.36759 * 14 13 12 38 38 H 1.09003 * 109.61945 * 301.26143 * 14 13 12 39 39 H 1.09000 * 109.58460 * 185.71795 * 15 14 13 40 40 H 1.09002 * 109.58625 * 65.43951 * 15 14 13 41 41 H 1.08000 * 120.47806 * 0.02655 * 20 19 17 42 42 H 1.07998 * 119.50785 * 180.02562 * 21 20 19 43 43 H 1.08004 * 119.58031 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.58786 * 66.17609 * 26 16 15 45 45 H 1.09003 * 109.58543 * 186.46236 * 26 16 15 46 46 H 1.09003 * 109.49736 * 58.66155 * 27 13 12 47 47 H 1.08997 * 109.52775 * 298.58087 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1642 2.0559 -1.1828 5 1 2.5653 3.0587 -1.1865 6 6 1.7966 1.4509 -2.3767 7 7 0.9974 0.4051 -2.3660 8 14 2.4360 2.1210 -3.9990 9 1 3.9198 2.0617 -4.0086 10 1 1.9012 1.3037 -5.1174 11 1 1.9960 3.5301 -4.1603 12 6 2.3505 2.0407 1.2653 13 6 3.7818 1.6800 1.6680 14 6 4.7640 2.3041 0.6735 15 6 6.1937 1.9150 1.0622 16 7 6.4260 2.2943 2.4625 17 6 7.4806 3.0626 2.8000 18 8 8.2828 3.3999 1.9517 19 6 7.6617 3.4955 4.2036 20 6 7.2756 2.6712 5.2662 21 6 7.4621 3.1146 6.5600 22 7 7.9949 4.2961 6.8025 23 6 8.3731 5.1053 5.8344 24 6 8.2291 4.7396 4.5059 25 9 8.6244 5.5721 3.5180 26 6 5.4870 1.8195 3.4880 27 6 4.0652 2.2124 3.0745 28 1 -0.3633 0.4946 0.9008 29 1 -0.3633 0.5326 -0.8788 30 1 -0.3633 -1.0276 -0.0219 31 1 1.8933 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 0.7409 -0.0178 -3.2004 34 1 1.6601 1.7082 2.0404 35 1 2.2683 3.1209 1.1445 36 1 3.8990 0.5963 1.6594 37 1 4.6628 3.3892 0.6977 38 1 4.5482 1.9404 -0.3312 39 1 6.9021 2.4379 0.4196 40 1 6.3231 0.8387 0.9487 41 1 6.8381 1.7022 5.0767 42 1 7.1672 2.4844 7.3860 43 1 8.8054 6.0642 6.0794 44 1 5.5563 0.7349 3.5730 45 1 5.7307 2.2774 4.4467 46 1 3.3504 1.7834 3.7767 47 1 3.9722 3.2984 3.0786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755182983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:50 Heat of formation + Delta-G solvation = -6.649132 kcal Electronic energy + Delta-G solvation = -29657.269407 eV Core-core repulsion = 25562.900134 eV Total energy + Delta-G solvation = -4094.369273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.13744 -41.98420 -40.49989 -39.08804 -37.54420 -35.06889 -33.92966 -32.61517 -32.18137 -31.72144 -30.89847 -28.40996 -26.51038 -25.28311 -25.10492 -23.93070 -23.79671 -22.38179 -21.43804 -20.40588 -18.90497 -18.66589 -18.50125 -18.32047 -17.37144 -16.99631 -16.93746 -16.35377 -16.21651 -15.83760 -15.49225 -15.48339 -15.06572 -14.86143 -14.73812 -14.64849 -14.56122 -14.26814 -14.18584 -13.63614 -13.48986 -13.27892 -12.99883 -12.87795 -12.64821 -12.53435 -12.37586 -12.20923 -11.93784 -11.83973 -11.71024 -11.55186 -11.35248 -11.30637 -11.14681 -10.99474 -10.50858 -10.25079 -10.06369 -9.79277 -8.71953 -7.67254 -5.03814 -0.56498 -0.22482 1.45696 1.46754 1.50704 1.54602 1.76951 2.50571 2.56153 2.81928 3.06701 3.34930 3.40037 3.54575 3.65711 3.69722 3.87112 3.92802 4.08315 4.13732 4.26665 4.34440 4.41527 4.51798 4.58387 4.62080 4.73423 4.75079 4.76182 4.83725 4.89451 4.95874 5.06031 5.12656 5.18235 5.22174 5.27326 5.32986 5.42957 5.46635 5.59709 5.61026 5.68424 5.96267 6.19548 6.32353 6.44455 6.65725 6.84784 7.31818 8.03854 8.40442 9.27734 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.002906 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.828666 B = 9631.625054 C =10622.177907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.175 3.825 3 N -0.614 5.614 4 C -0.233 4.233 5 H 0.067 0.933 6 C -0.055 4.055 7 N -0.919 5.919 8 Si 0.945 3.055 9 H -0.288 1.288 10 H -0.298 1.298 11 H -0.287 1.287 12 C 0.156 3.844 13 C -0.095 4.095 14 C -0.111 4.111 15 C 0.118 3.882 16 N -0.590 5.590 17 C 0.549 3.451 18 O -0.575 6.575 19 C -0.133 4.133 20 C -0.116 4.116 21 C 0.100 3.900 22 N -0.456 5.456 23 C 0.081 3.919 24 C 0.070 3.930 25 F -0.133 7.133 26 C 0.072 3.928 27 C -0.122 4.122 28 H 0.012 0.988 29 H 0.060 0.940 30 H 0.027 0.973 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.241 0.759 34 H 0.049 0.951 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.197 0.803 42 H 0.215 0.785 43 H 0.194 0.806 44 H 0.103 0.897 45 H 0.131 0.869 46 H 0.103 0.897 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.869 1.555 22.330 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.050 3.950 3 N -0.336 5.336 4 C -0.363 4.363 5 H 0.085 0.915 6 C -0.248 4.248 7 N -0.569 5.569 8 Si 0.776 3.224 9 H -0.215 1.215 10 H -0.224 1.224 11 H -0.214 1.214 12 C 0.030 3.970 13 C -0.116 4.116 14 C -0.149 4.149 15 C -0.004 4.004 16 N -0.321 5.321 17 C 0.337 3.663 18 O -0.455 6.455 19 C -0.145 4.145 20 C -0.136 4.136 21 C -0.057 4.057 22 N -0.164 5.164 23 C -0.077 4.077 24 C 0.047 3.953 25 F -0.111 7.111 26 C -0.048 4.048 27 C -0.160 4.160 28 H 0.032 0.968 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.214 0.786 42 H 0.231 0.769 43 H 0.211 0.789 44 H 0.121 0.879 45 H 0.148 0.852 46 H 0.122 0.878 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.322 1.931 22.541 25.299 hybrid contribution 0.027 0.468 -3.027 3.063 sum 11.349 2.399 19.514 22.701 Atomic orbital electron populations 1.22259 0.99201 0.98403 0.99272 1.20724 0.92511 0.84391 0.97329 1.44335 1.76029 1.11414 1.01815 1.19386 1.33623 0.98110 0.85161 0.91522 1.25219 1.00421 0.99577 0.99608 1.70376 1.36395 1.25655 1.24453 0.85665 0.78175 0.77126 0.81464 1.21457 1.22422 1.21401 1.20894 0.93736 0.95311 0.87083 1.21643 0.95968 0.99831 0.94143 1.21744 0.93201 0.99371 1.00629 1.21600 0.97057 1.00563 0.81170 1.48115 1.25307 1.49189 1.09451 1.18445 0.81586 0.78374 0.87845 1.90799 1.45008 1.57647 1.52066 1.20543 1.03292 0.95906 0.94749 1.23098 0.96766 1.02084 0.91641 1.23600 0.93232 0.92148 0.96702 1.67714 1.08517 1.04979 1.35225 1.23249 0.98155 1.01500 0.84832 1.19241 0.99559 0.88929 0.87544 1.91549 1.88081 1.70185 1.61334 1.23078 0.87945 1.01775 0.91976 1.21917 0.96617 1.01111 0.96405 0.96847 0.92089 0.95367 0.92419 0.95698 0.94886 0.93306 0.94823 0.91587 0.94145 0.91571 0.91488 0.90035 0.78629 0.76875 0.78906 0.87854 0.85173 0.87828 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 9.53 71.98 0.69 -5.29 16 2 C 0.18 7.99 5.70 86.38 0.49 8.48 16 3 N -0.61 -28.02 2.36 -701.99 -1.66 -29.68 16 4 C -0.23 -12.04 8.14 84.03 0.68 -11.35 16 5 H 0.07 3.45 7.87 -2.91 -0.02 3.43 16 6 C -0.05 -2.94 5.17 84.86 0.44 -2.50 16 7 N -0.92 -50.86 7.60 21.65 0.16 -50.70 16 8 Si 0.94 44.87 29.59 68.60 2.03 46.90 16 9 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 10 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 C 0.16 5.58 5.09 86.38 0.44 6.02 16 13 C -0.09 -2.71 2.33 -10.76 -0.03 -2.74 16 14 C -0.11 -3.66 5.08 30.68 0.16 -3.51 16 15 C 0.12 3.44 6.42 86.36 0.55 3.99 16 16 N -0.59 -14.27 2.97 -822.12 -2.45 -16.71 16 17 C 0.55 15.41 7.40 86.83 0.64 16.06 16 18 O -0.57 -21.59 15.56 -3.80 -0.06 -21.65 16 19 C -0.13 -2.76 5.55 -19.85 -0.11 -2.87 16 20 C -0.12 -1.26 7.57 22.63 0.17 -1.09 16 21 C 0.10 0.86 11.17 84.64 0.95 1.80 16 22 N -0.46 -6.36 10.33 -195.82 -2.02 -8.38 16 23 C 0.08 1.27 11.17 84.78 0.95 2.22 16 24 C 0.07 1.53 7.29 22.78 0.17 1.69 16 25 F -0.13 -3.72 16.22 44.97 0.73 -2.99 16 26 C 0.07 1.10 5.04 86.36 0.44 1.53 16 27 C -0.12 -2.35 5.36 30.67 0.16 -2.19 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 3.22 6.02 -2.39 -0.01 3.21 16 30 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.06 3.02 5.92 -2.39 -0.01 3.01 16 32 H 0.02 0.99 8.04 -2.39 -0.02 0.97 16 33 H 0.24 13.30 8.31 -92.71 -0.77 12.53 16 34 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 35 H 0.03 1.27 7.98 -2.38 -0.02 1.25 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 2.66 6.62 -2.39 -0.02 2.65 16 39 H 0.07 2.25 7.02 -2.39 -0.02 2.23 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.20 0.93 5.43 -2.91 -0.02 0.91 16 42 H 0.21 0.01 8.06 -2.91 -0.02 -0.02 16 43 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 44 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.13 1.26 3.46 -3.20 -0.01 1.25 16 46 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -70.89 370.01 4.50 -66.38 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 0.98 Total: 6.57 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 6.79 Total: 10.26 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -5.96 Total: -105.48 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.06 Total: -21.65 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.73 Total: -2.99 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -70.89 4.50 -66.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755182983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.733 kcal (2) G-P(sol) polarization free energy of solvation -70.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds