Wall clock time and date at job start Tue Mar 31 2020 18:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 119.99701 * 2 1 4 4 O 1.21276 * 120.00327 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99529 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.53958 * 302.61014 * 5 3 2 7 7 C 1.54889 * 110.49167 * 65.22865 * 5 3 2 8 8 C 1.54887 * 102.75432 * 156.62148 * 7 5 3 9 9 C 1.54269 * 104.19342 * 322.05383 * 8 7 5 10 10 C 1.53874 * 106.59638 * 23.61274 * 9 8 7 11 11 H 1.09007 * 110.03271 * 240.66053 * 10 9 8 12 12 N 1.46503 * 110.03229 * 119.28483 * 10 9 8 13 13 C 1.34771 * 120.00087 * 86.45343 * 12 10 9 14 14 O 1.21591 * 120.00165 * 359.97438 * 13 12 10 15 15 N 1.34781 * 120.00107 * 179.97438 * 13 12 10 16 16 C 1.40192 * 120.00041 * 179.97438 * 15 13 12 17 17 C 1.40403 * 125.97573 * 0.02562 * 16 15 13 18 18 C 1.35244 * 107.86792 * 180.19303 * 17 16 15 19 19 N 1.34960 * 107.85895 * 359.63548 * 18 17 16 20 20 C 1.46502 * 125.97622 * 180.12082 * 19 18 17 21 21 C 1.50700 * 109.47167 * 125.26427 * 20 19 18 22 22 H 1.07996 * 120.00170 * 0.02562 * 21 20 19 23 23 C 1.37877 * 119.99876 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00084 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00035 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46894 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47114 * 120.00057 * 25 23 21 28 28 H 1.48498 * 109.47378 * 240.00456 * 25 23 21 29 29 N 1.31215 * 125.97165 * 179.97438 * 16 15 13 30 30 H 1.09001 * 109.47071 * 59.99824 * 1 2 3 31 31 H 1.08998 * 109.47074 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46775 * 300.00251 * 1 2 3 33 33 H 0.96996 * 119.99680 * 179.97438 * 2 1 3 34 34 H 1.09002 * 110.75357 * 38.29578 * 7 5 3 35 35 H 1.08999 * 110.91125 * 275.01174 * 7 5 3 36 36 H 1.09000 * 110.48543 * 203.38149 * 8 7 5 37 37 H 1.08998 * 110.48881 * 80.73056 * 8 7 5 38 38 H 1.08997 * 110.03407 * 264.33173 * 9 8 7 39 39 H 1.09005 * 110.03119 * 142.89312 * 9 8 7 40 40 H 0.97001 * 119.99974 * 266.44636 * 12 10 9 41 41 H 0.97001 * 119.99949 * 0.02562 * 15 13 12 42 42 H 1.08002 * 126.06111 * 359.92518 * 17 16 15 43 43 H 1.07996 * 126.06943 * 179.77314 * 18 17 16 44 44 H 1.09000 * 109.46871 * 245.26602 * 20 19 18 45 45 H 1.08997 * 109.47253 * 5.26417 * 20 19 18 46 46 H 0.97003 * 120.00011 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0279 0.6172 0.8607 7 6 4.1886 0.5589 -1.3164 8 6 5.6072 1.1723 -1.4173 9 6 5.4329 2.6156 -0.9010 10 6 4.1859 2.6123 0.0005 11 1 3.4340 3.2926 -0.3997 12 7 4.5499 3.0121 1.3621 13 6 4.5854 4.3177 1.6942 14 8 4.3158 5.1639 0.8637 15 7 4.9198 4.6856 2.9470 16 6 4.9573 6.0438 3.2924 17 6 4.6708 7.1203 2.4378 18 6 4.8235 8.2632 3.1446 19 7 5.1844 7.9278 4.4010 20 6 5.4506 8.8613 5.4982 21 6 4.5875 8.5054 6.6812 22 1 3.9089 7.6673 6.6219 23 6 4.6650 9.2490 7.8397 24 7 5.4917 10.2692 7.9121 25 14 3.5946 8.8082 9.3058 26 1 2.7574 7.6284 8.9706 27 1 4.4582 8.4870 10.4704 28 1 2.7177 9.9585 9.6421 29 7 5.2653 6.5311 4.4711 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.9500 -0.8400 0.0004 34 1 3.5748 0.8634 -2.1642 35 1 4.2414 -0.5278 -1.2504 36 1 5.9485 1.1761 -2.4525 37 1 6.3060 0.6233 -0.7862 38 1 5.2858 3.2967 -1.7392 39 1 6.3089 2.9146 -0.3254 40 1 4.7653 2.3371 2.0245 41 1 5.1353 4.0106 3.6095 42 1 4.3841 7.0486 1.3990 43 1 4.6797 9.2661 2.7706 44 1 6.5009 8.7978 5.7826 45 1 5.2226 9.8769 5.1746 46 1 5.5459 10.7926 8.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346730687.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:39 Heat of formation + Delta-G solvation = 14.239353 kcal Electronic energy + Delta-G solvation = -28327.747411 eV Core-core repulsion = 24254.203893 eV Total energy + Delta-G solvation = -4073.543518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.91209 -40.38849 -39.34925 -37.64303 -35.00471 -34.57509 -33.82948 -33.17944 -30.80986 -30.19672 -29.21322 -27.90980 -26.81543 -26.41560 -23.23015 -22.34363 -21.88039 -20.87672 -20.32311 -20.12797 -19.64720 -18.30812 -17.48656 -17.01214 -16.52573 -16.23125 -15.97528 -15.58163 -15.27201 -15.07630 -14.83346 -14.59961 -14.14322 -13.93581 -13.83424 -13.75315 -13.17556 -12.80146 -12.71731 -12.55977 -12.36455 -12.20042 -12.13580 -11.91323 -11.67320 -11.52929 -11.31507 -11.00375 -10.90040 -10.83507 -10.34439 -10.21746 -10.11751 -9.96903 -9.58511 -9.52942 -9.41921 -9.14185 -8.59508 -8.01329 -7.32525 -6.20121 -4.24674 2.28807 2.44832 2.75986 2.81445 3.21716 3.25148 3.32437 3.39566 3.68058 3.89504 3.97870 4.11559 4.29440 4.36134 4.47307 4.65122 4.83231 4.90148 4.95929 5.07650 5.13010 5.14976 5.20438 5.23969 5.36709 5.42785 5.59125 5.62799 5.75040 5.88207 5.93726 5.95500 6.02414 6.32061 6.44358 6.63425 6.68285 6.95661 7.04020 7.08380 7.18143 7.59321 7.74957 7.86627 7.89052 8.06717 8.14442 8.71770 8.74348 8.86999 9.40725 10.88577 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.002222 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.858766 B =12600.910962 C =13637.493486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.737 5.737 3 C 0.516 3.484 4 O -0.522 6.522 5 C -0.122 4.122 6 H 0.107 0.893 7 C -0.111 4.111 8 C -0.122 4.122 9 C -0.137 4.137 10 C 0.175 3.825 11 H 0.113 0.887 12 N -0.738 5.738 13 C 0.715 3.285 14 O -0.562 6.562 15 N -0.645 5.645 16 C 0.277 3.723 17 C -0.285 4.285 18 C 0.050 3.950 19 N -0.322 5.322 20 C 0.259 3.741 21 C -0.525 4.525 22 H 0.069 0.931 23 C 0.061 3.939 24 N -0.896 5.896 25 Si 0.907 3.093 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.282 1.282 29 N -0.309 5.309 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.401 0.599 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.393 0.607 41 H 0.405 0.595 42 H 0.161 0.839 43 H 0.167 0.833 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 -25.190 -19.264 31.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.389 5.389 3 C 0.301 3.699 4 O -0.397 6.397 5 C -0.145 4.145 6 H 0.125 0.875 7 C -0.149 4.149 8 C -0.160 4.160 9 C -0.176 4.176 10 C 0.070 3.930 11 H 0.131 0.869 12 N -0.394 5.394 13 C 0.414 3.586 14 O -0.437 6.437 15 N -0.295 5.295 16 C 0.023 3.977 17 C -0.317 4.317 18 C -0.100 4.100 19 N -0.104 5.104 20 C 0.141 3.859 21 C -0.564 4.564 22 H 0.087 0.913 23 C -0.142 4.142 24 N -0.535 5.535 25 Si 0.734 3.266 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.208 1.208 29 N -0.140 5.140 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.234 0.766 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.227 0.773 41 H 0.239 0.761 42 H 0.178 0.822 43 H 0.184 0.816 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.695 -23.652 -18.625 30.225 hybrid contribution -0.376 -1.077 0.895 1.449 sum -3.070 -24.729 -17.730 30.583 Atomic orbital electron populations 1.21552 0.79503 1.02167 1.02579 1.45779 1.07810 1.08606 1.76699 1.20488 0.89854 0.83704 0.75841 1.90790 1.69991 1.31076 1.47808 1.22440 0.91989 0.98683 1.01343 0.87496 1.22453 0.97045 1.00061 0.95310 1.22363 0.96013 0.95852 1.01759 1.22646 0.98232 0.96859 0.99870 1.21345 0.96870 0.93650 0.81179 0.86912 1.45112 1.75418 1.05508 1.13333 1.15588 0.78232 0.82955 0.81810 1.90868 1.54379 1.49237 1.49178 1.41387 1.71668 1.04927 1.11474 1.18784 1.02264 0.83560 0.93093 1.21526 1.18299 0.89165 1.02665 1.22545 1.01383 1.00013 0.86046 1.49028 1.48983 1.03039 1.09324 1.19720 0.98278 0.85502 0.82393 1.21311 1.22995 1.15132 0.96958 0.91265 1.24949 0.95725 0.94711 0.98788 1.69931 1.36640 1.18518 1.28362 0.86282 0.80069 0.78502 0.81704 1.19575 1.20741 1.20778 1.77311 1.28247 0.90721 1.17765 0.92151 0.90682 0.92106 0.76580 0.90529 0.90423 0.90959 0.91143 0.90561 0.90645 0.77333 0.76051 0.82166 0.81575 0.93811 0.92569 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.70 59.85 0.64 1.13 16 2 N -0.74 -4.29 5.70 -67.08 -0.38 -4.67 16 3 C 0.52 4.77 7.13 -10.99 -0.08 4.69 16 4 O -0.52 -7.64 15.42 5.56 0.09 -7.56 16 5 C -0.12 -0.81 2.95 -90.11 -0.27 -1.07 16 6 H 0.11 0.46 7.73 -51.93 -0.40 0.06 16 7 C -0.11 -0.49 6.31 -24.74 -0.16 -0.65 16 8 C -0.12 -0.63 6.83 -25.07 -0.17 -0.80 16 9 C -0.14 -1.16 6.59 -25.61 -0.17 -1.33 16 10 C 0.18 1.77 2.61 -66.81 -0.17 1.60 16 11 H 0.11 1.60 6.31 -51.93 -0.33 1.27 16 12 N -0.74 -8.07 5.00 -57.57 -0.29 -8.36 16 13 C 0.71 11.37 8.52 -86.92 -0.74 10.63 16 14 O -0.56 -10.96 13.15 5.29 0.07 -10.89 16 15 N -0.64 -10.68 5.46 -15.50 -0.08 -10.77 16 16 C 0.28 5.88 8.11 -154.36 -1.25 4.63 16 17 C -0.29 -6.04 9.61 -39.83 -0.38 -6.43 16 18 C 0.05 1.05 11.44 -17.24 -0.20 0.86 16 19 N -0.32 -7.78 3.67 -62.56 -0.23 -8.01 16 20 C 0.26 6.76 6.26 -5.19 -0.03 6.72 16 21 C -0.53 -14.97 9.24 -34.44 -0.32 -15.29 16 22 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 23 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 24 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 25 Si 0.91 21.77 29.54 -169.99 -5.02 16.74 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 29 N -0.31 -7.40 12.42 31.44 0.39 -7.01 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.40 0.97 8.83 -40.82 -0.36 0.61 16 34 H 0.08 0.40 8.05 -51.93 -0.42 -0.02 16 35 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 40 H 0.39 2.99 8.36 -40.82 -0.34 2.65 16 41 H 0.41 5.41 8.84 -40.82 -0.36 5.05 16 42 H 0.16 3.37 5.91 -52.49 -0.31 3.06 16 43 H 0.17 2.88 8.06 -52.49 -0.42 2.46 16 44 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.44 8.07 -51.93 -0.42 1.02 16 46 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -37.70 386.02 -9.00 -46.70 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.70 Total: 6.72 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -3.39 Total: 6.31 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: 0.14 Total: -63.84 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.16 Total: -18.45 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.70 -9.00 -46.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346730687.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.940 kcal (2) G-P(sol) polarization free energy of solvation -37.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds