Wall clock time and date at job start Tue Mar 31 2020 18:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 119.99701 * 2 1 4 4 O 1.21276 * 120.00327 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99529 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.53958 * 302.61014 * 5 3 2 7 7 C 1.54889 * 110.49167 * 65.22865 * 5 3 2 8 8 C 1.54887 * 102.75432 * 156.62148 * 7 5 3 9 9 C 1.54269 * 104.19342 * 322.05383 * 8 7 5 10 10 C 1.53874 * 106.59638 * 23.61274 * 9 8 7 11 11 H 1.09007 * 110.03271 * 240.66053 * 10 9 8 12 12 N 1.46503 * 110.03229 * 119.28483 * 10 9 8 13 13 C 1.34771 * 120.00087 * 86.45343 * 12 10 9 14 14 O 1.21591 * 120.00165 * 359.97438 * 13 12 10 15 15 N 1.34781 * 120.00107 * 179.97438 * 13 12 10 16 16 C 1.40192 * 120.00041 * 179.97438 * 15 13 12 17 17 C 1.40403 * 125.97573 * 0.02562 * 16 15 13 18 18 C 1.35244 * 107.86792 * 180.19303 * 17 16 15 19 19 N 1.34960 * 107.85895 * 359.63548 * 18 17 16 20 20 C 1.46502 * 125.97622 * 180.12082 * 19 18 17 21 21 C 1.50700 * 109.47167 * 125.26427 * 20 19 18 22 22 H 1.07996 * 120.00170 * 0.02562 * 21 20 19 23 23 C 1.37877 * 119.99876 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00084 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00035 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46894 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47114 * 120.00057 * 25 23 21 28 28 H 1.48498 * 109.47378 * 240.00456 * 25 23 21 29 29 N 1.31215 * 125.97165 * 179.97438 * 16 15 13 30 30 H 1.09001 * 109.47071 * 59.99824 * 1 2 3 31 31 H 1.08998 * 109.47074 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46775 * 300.00251 * 1 2 3 33 33 H 0.96996 * 119.99680 * 179.97438 * 2 1 3 34 34 H 1.09002 * 110.75357 * 38.29578 * 7 5 3 35 35 H 1.08999 * 110.91125 * 275.01174 * 7 5 3 36 36 H 1.09000 * 110.48543 * 203.38149 * 8 7 5 37 37 H 1.08998 * 110.48881 * 80.73056 * 8 7 5 38 38 H 1.08997 * 110.03407 * 264.33173 * 9 8 7 39 39 H 1.09005 * 110.03119 * 142.89312 * 9 8 7 40 40 H 0.97001 * 119.99974 * 266.44636 * 12 10 9 41 41 H 0.97001 * 119.99949 * 0.02562 * 15 13 12 42 42 H 1.08002 * 126.06111 * 359.92518 * 17 16 15 43 43 H 1.07996 * 126.06943 * 179.77314 * 18 17 16 44 44 H 1.09000 * 109.46871 * 245.26602 * 20 19 18 45 45 H 1.08997 * 109.47253 * 5.26417 * 20 19 18 46 46 H 0.97003 * 120.00011 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0279 0.6172 0.8607 7 6 4.1886 0.5589 -1.3164 8 6 5.6072 1.1723 -1.4173 9 6 5.4329 2.6156 -0.9010 10 6 4.1859 2.6123 0.0005 11 1 3.4340 3.2926 -0.3997 12 7 4.5499 3.0121 1.3621 13 6 4.5854 4.3177 1.6942 14 8 4.3158 5.1639 0.8637 15 7 4.9198 4.6856 2.9470 16 6 4.9573 6.0438 3.2924 17 6 4.6708 7.1203 2.4378 18 6 4.8235 8.2632 3.1446 19 7 5.1844 7.9278 4.4010 20 6 5.4506 8.8613 5.4982 21 6 4.5875 8.5054 6.6812 22 1 3.9089 7.6673 6.6219 23 6 4.6650 9.2490 7.8397 24 7 5.4917 10.2692 7.9121 25 14 3.5946 8.8082 9.3058 26 1 2.7574 7.6284 8.9706 27 1 4.4582 8.4870 10.4704 28 1 2.7177 9.9585 9.6421 29 7 5.2653 6.5311 4.4711 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.9500 -0.8400 0.0004 34 1 3.5748 0.8634 -2.1642 35 1 4.2414 -0.5278 -1.2504 36 1 5.9485 1.1761 -2.4525 37 1 6.3060 0.6233 -0.7862 38 1 5.2858 3.2967 -1.7392 39 1 6.3089 2.9146 -0.3254 40 1 4.7653 2.3371 2.0245 41 1 5.1353 4.0106 3.6095 42 1 4.3841 7.0486 1.3990 43 1 4.6797 9.2661 2.7706 44 1 6.5009 8.7978 5.7826 45 1 5.2226 9.8769 5.1746 46 1 5.5459 10.7926 8.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346730687.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:38 Heat of formation + Delta-G solvation = -14.660506 kcal Electronic energy + Delta-G solvation = -28329.000603 eV Core-core repulsion = 24254.203893 eV Total energy + Delta-G solvation = -4074.796710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.26077 -41.50789 -40.56619 -38.43707 -36.18692 -35.68117 -35.32077 -34.67938 -32.64178 -30.94536 -30.78517 -28.95756 -28.14734 -27.31531 -25.07065 -23.49494 -22.73784 -22.13568 -21.53339 -21.07778 -20.83854 -19.40044 -18.69718 -18.33035 -18.28215 -17.50647 -16.80837 -16.72729 -16.53364 -16.19037 -16.11069 -15.68520 -15.55763 -15.44044 -14.70565 -14.50185 -14.45151 -14.26636 -13.86402 -13.80993 -13.70120 -13.32921 -13.09327 -13.03885 -12.87295 -12.73550 -12.49462 -12.31146 -12.06639 -12.01723 -11.85858 -11.63199 -11.46751 -11.39325 -11.11869 -10.86760 -10.72569 -10.20228 -10.13501 -9.72930 -9.05715 -8.33164 -6.47231 1.06716 1.12737 1.36751 1.37717 1.51397 1.60467 1.70404 2.08856 2.27421 2.36076 2.41449 2.98098 3.14662 3.34130 3.58612 3.87657 3.96985 4.16988 4.26967 4.36479 4.39347 4.44981 4.52622 4.58536 4.60592 4.70685 4.76988 4.88693 4.94099 4.95290 4.97932 5.02925 5.10423 5.16145 5.23737 5.26478 5.41142 5.44854 5.56369 5.59368 5.76662 5.88245 5.97295 6.28956 6.55661 6.63710 6.77164 7.14999 7.22610 7.28129 7.45614 8.74577 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.002222 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.858766 B =12600.910962 C =13637.493486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.717 5.717 3 C 0.509 3.491 4 O -0.588 6.588 5 C -0.111 4.111 6 H 0.143 0.857 7 C -0.101 4.101 8 C -0.112 4.112 9 C -0.136 4.136 10 C 0.168 3.832 11 H 0.066 0.934 12 N -0.714 5.714 13 C 0.711 3.289 14 O -0.601 6.601 15 N -0.636 5.636 16 C 0.285 3.715 17 C -0.295 4.295 18 C 0.057 3.943 19 N -0.345 5.345 20 C 0.273 3.727 21 C -0.546 4.546 22 H 0.050 0.950 23 C 0.018 3.982 24 N -0.920 5.920 25 Si 0.973 3.027 26 H -0.276 1.276 27 H -0.271 1.271 28 H -0.270 1.270 29 N -0.346 5.346 30 H 0.046 0.954 31 H 0.114 0.886 32 H 0.040 0.960 33 H 0.422 0.578 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.413 0.587 41 H 0.421 0.579 42 H 0.163 0.837 43 H 0.201 0.799 44 H 0.023 0.977 45 H 0.058 0.942 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 -28.496 -19.385 34.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.370 5.370 3 C 0.296 3.704 4 O -0.467 6.467 5 C -0.133 4.133 6 H 0.160 0.840 7 C -0.139 4.139 8 C -0.150 4.150 9 C -0.175 4.175 10 C 0.063 3.937 11 H 0.084 0.916 12 N -0.371 5.371 13 C 0.410 3.590 14 O -0.479 6.479 15 N -0.288 5.288 16 C 0.029 3.971 17 C -0.326 4.326 18 C -0.092 4.092 19 N -0.127 5.127 20 C 0.154 3.846 21 C -0.585 4.585 22 H 0.069 0.931 23 C -0.182 4.182 24 N -0.559 5.559 25 Si 0.797 3.203 26 H -0.201 1.201 27 H -0.196 1.196 28 H -0.195 1.195 29 N -0.177 5.177 30 H 0.065 0.935 31 H 0.132 0.868 32 H 0.059 0.941 33 H 0.259 0.741 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.250 0.750 41 H 0.258 0.742 42 H 0.180 0.820 43 H 0.218 0.782 44 H 0.041 0.959 45 H 0.076 0.924 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.576 -27.085 -18.757 33.047 hybrid contribution -0.437 -0.126 0.802 0.922 sum -3.013 -27.211 -17.955 32.740 Atomic orbital electron populations 1.21641 0.79398 1.04190 1.00977 1.45665 1.08004 1.08621 1.74689 1.20999 0.90995 0.83563 0.74852 1.90776 1.71364 1.33518 1.51074 1.22453 0.90091 0.96515 1.04227 0.83970 1.22494 0.95937 1.02180 0.93308 1.22344 0.96913 0.93150 1.02560 1.22590 0.96741 0.99373 0.98819 1.21427 0.96750 0.95090 0.80432 0.91550 1.44972 1.73738 1.03997 1.14351 1.15827 0.77906 0.84217 0.81051 1.90836 1.56030 1.50848 1.50148 1.41366 1.71572 1.03585 1.12285 1.19082 1.00241 0.85486 0.92259 1.21673 1.18710 0.89468 1.02784 1.23127 0.99553 1.01684 0.84800 1.48824 1.50932 1.03139 1.09793 1.19346 0.96616 0.86029 0.82617 1.21419 1.23497 1.15034 0.98509 0.93121 1.25747 0.96817 0.94430 1.01257 1.70002 1.37449 1.19052 1.29408 0.85288 0.78439 0.78269 0.78328 1.20064 1.19641 1.19489 1.77233 1.30361 0.90870 1.19232 0.93525 0.86758 0.94081 0.74086 0.91587 0.86406 0.90043 0.89059 0.92363 0.91517 0.74952 0.74210 0.82000 0.78212 0.95926 0.92371 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.70 127.77 1.37 2.20 16 2 N -0.72 -6.74 5.70 -484.52 -2.76 -9.50 16 3 C 0.51 8.95 7.13 87.66 0.62 9.57 16 4 O -0.59 -18.02 15.42 -3.02 -0.05 -18.07 16 5 C -0.11 -1.21 2.95 -10.46 -0.03 -1.24 16 6 H 0.14 0.57 7.73 -2.39 -0.02 0.55 16 7 C -0.10 -0.54 6.31 31.88 0.20 -0.34 16 8 C -0.11 -0.80 6.83 31.67 0.22 -0.58 16 9 C -0.14 -2.22 6.59 31.32 0.21 -2.01 16 10 C 0.17 3.37 2.61 45.72 0.12 3.49 16 11 H 0.07 2.03 6.31 -2.38 -0.02 2.01 16 12 N -0.71 -15.16 5.00 -454.33 -2.27 -17.43 16 13 C 0.71 22.89 8.52 179.05 1.53 24.42 16 14 O -0.60 -24.36 13.15 -4.00 -0.05 -24.41 16 15 N -0.64 -21.13 5.46 -321.23 -1.75 -22.88 16 16 C 0.28 12.29 8.11 133.31 1.08 13.37 16 17 C -0.30 -12.72 9.61 22.11 0.21 -12.50 16 18 C 0.06 2.42 11.44 83.52 0.96 3.37 16 19 N -0.34 -17.03 3.67 -351.85 -1.29 -18.32 16 20 C 0.27 14.62 6.26 85.63 0.54 15.16 16 21 C -0.55 -31.73 9.24 25.60 0.24 -31.49 16 22 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 23 C 0.02 1.00 5.46 84.65 0.46 1.46 16 24 N -0.92 -53.03 13.29 21.45 0.28 -52.75 16 25 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 29 N -0.35 -16.90 12.42 -54.43 -0.68 -17.58 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.42 0.36 8.83 -92.71 -0.82 -0.46 16 34 H 0.07 0.54 8.05 -2.39 -0.02 0.52 16 35 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.20 7.92 -2.38 -0.02 1.18 16 40 H 0.41 5.40 8.36 -92.71 -0.77 4.63 16 41 H 0.42 10.97 8.84 -92.71 -0.82 10.15 16 42 H 0.16 6.98 5.91 -2.91 -0.02 6.96 16 43 H 0.20 6.79 8.06 -2.91 -0.02 6.77 16 44 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 3.05 8.07 -2.39 -0.02 3.03 16 46 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -86.95 386.02 -0.20 -87.15 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -1.37 Total: 22.30 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: 7.71 Total: 24.88 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -8.47 Total: -138.46 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.10 Total: -42.48 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -86.95 -0.20 -87.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346730687.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.491 kcal (2) G-P(sol) polarization free energy of solvation -86.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds