Wall clock time and date at job start Tue Mar 31 2020 18:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99893 * 2 1 4 4 C 1.50700 * 109.47288 * 180.02562 * 3 2 1 5 5 N 1.31790 * 119.08753 * 89.99251 * 4 3 2 6 6 C 1.32513 * 120.99049 * 180.02562 * 5 4 3 7 7 C 1.38202 * 119.18196 * 0.02562 * 6 5 4 8 8 C 1.39501 * 118.34052 * 0.27022 * 7 6 5 9 9 N 1.39017 * 120.51999 * 179.70518 * 8 7 6 10 10 C 1.34784 * 119.99559 * 174.78454 * 9 8 7 11 11 O 1.21567 * 120.00173 * 5.00258 * 10 9 8 12 12 N 1.34773 * 119.99630 * 184.99487 * 10 9 8 13 13 C 1.46505 * 119.99648 * 180.02562 * 12 10 9 14 14 C 1.53039 * 109.45850 * 275.02531 * 13 12 10 15 15 C 1.53193 * 109.31074 * 178.60077 * 14 13 12 16 16 N 1.46935 * 108.76290 * 54.65823 * 15 14 13 17 17 C 1.36933 * 120.63004 * 126.35897 * 16 15 14 18 18 H 1.08002 * 120.00163 * 328.39611 * 17 16 15 19 19 C 1.38816 * 120.00205 * 148.38513 * 17 16 15 20 20 N 1.31617 * 119.99797 * 349.81638 * 19 17 16 21 21 Si 1.86794 * 120.00343 * 169.81237 * 19 17 16 22 22 H 1.48504 * 109.46813 * 60.00169 * 21 19 17 23 23 H 1.48495 * 109.47456 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47068 * 300.00805 * 21 19 17 25 25 C 1.46926 * 118.73794 * 306.38193 * 16 15 14 26 26 C 1.53041 * 109.45701 * 154.97438 * 13 12 10 27 27 N 1.31748 * 119.08054 * 270.02140 * 4 3 2 28 28 H 1.08997 * 109.46906 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47239 * 300.00480 * 1 2 3 30 30 H 1.09000 * 109.46659 * 60.00416 * 1 2 3 31 31 H 1.08998 * 109.47351 * 59.99392 * 3 2 1 32 32 H 1.09003 * 109.46964 * 299.99613 * 3 2 1 33 33 H 1.07992 * 120.40854 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.82730 * 179.97438 * 7 6 5 35 35 H 0.96996 * 120.00456 * 354.78755 * 9 8 7 36 36 H 0.97000 * 120.00187 * 359.97438 * 12 10 9 37 37 H 1.08997 * 109.45858 * 35.00298 * 13 12 10 38 38 H 1.08999 * 109.49826 * 298.56535 * 14 13 12 39 39 H 1.09000 * 109.49634 * 58.66472 * 14 13 12 40 40 H 1.09002 * 109.60186 * 294.87255 * 15 14 13 41 41 H 1.08995 * 109.70460 * 174.50405 * 15 14 13 42 42 H 0.96992 * 120.00353 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.58821 * 293.82196 * 25 16 15 44 44 H 1.09004 * 109.70007 * 173.46780 * 25 16 15 45 45 H 1.09007 * 109.49684 * 301.33438 * 26 13 12 46 46 H 1.08996 * 109.50245 * 61.43266 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.1508 1.1360 -1.1526 6 6 5.4710 1.0310 -1.1972 7 6 6.1827 0.9735 -0.0139 8 6 5.4754 1.0232 1.1875 9 7 6.1452 0.9626 2.4041 10 6 5.4638 1.1169 3.5568 11 8 4.2525 1.2180 3.5381 12 7 6.1255 1.1590 4.7302 13 6 5.3849 1.3262 5.9831 14 6 5.1392 2.8155 6.2353 15 6 4.3345 2.9844 7.5279 16 7 5.0406 2.2966 8.6175 17 6 5.3521 2.9591 9.7747 18 1 5.5671 4.0173 9.7500 19 6 5.3913 2.2709 10.9796 20 7 4.9383 1.0370 11.0476 21 14 6.0871 3.0957 12.5043 22 1 5.2959 4.3140 12.8126 23 1 6.0166 2.1556 13.6515 24 1 7.5024 3.4734 12.2605 25 6 5.4065 0.8845 8.4416 26 6 6.1988 0.7392 7.1386 27 7 4.1514 1.1353 1.1505 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 5.9844 0.9908 -2.1464 34 1 7.2593 0.8875 -0.0192 35 1 7.1027 0.8094 2.4236 36 1 7.0920 1.0779 4.7451 37 1 4.4290 0.8073 5.9119 38 1 6.0949 3.3307 6.3315 39 1 4.5798 3.2383 5.4008 40 1 3.3438 2.5478 7.4016 41 1 4.2393 4.0439 7.7657 42 1 4.9660 0.5559 11.8894 43 1 4.5032 0.2767 8.3897 44 1 6.0199 0.5566 9.2809 45 1 6.3937 -0.3161 6.9471 46 1 7.1444 1.2741 7.2262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597080662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:43 Heat of formation + Delta-G solvation = 18.017292 kcal Electronic energy + Delta-G solvation = -28634.965727 eV Core-core repulsion = 24561.586032 eV Total energy + Delta-G solvation = -4073.379695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.50808 -39.97332 -37.99468 -37.55736 -35.52664 -34.42614 -33.39127 -32.38818 -31.49586 -30.07504 -29.28927 -28.41678 -26.07324 -25.39187 -24.35115 -22.93681 -22.28464 -21.99348 -20.86648 -19.57156 -18.71977 -18.12995 -17.19322 -16.78359 -16.67935 -15.83448 -15.80841 -15.65640 -15.60300 -15.14324 -14.76555 -14.44351 -14.33355 -14.06426 -13.71442 -13.54132 -13.00726 -12.86051 -12.74314 -12.53233 -12.36333 -11.82705 -11.59493 -11.46541 -11.06826 -11.00637 -10.87302 -10.74975 -10.51712 -10.31403 -10.29312 -10.24276 -10.03879 -9.92277 -9.82540 -9.58658 -9.12984 -9.06371 -8.68879 -8.47682 -6.63555 -5.79964 -3.27900 0.60237 0.98041 2.23959 3.04665 3.29763 3.36992 3.42399 3.43175 3.71150 3.81155 4.14086 4.23194 4.45611 4.47601 4.77772 4.93362 4.98441 5.15628 5.18908 5.27997 5.31605 5.36141 5.41325 5.48879 5.49034 5.58606 5.79319 5.87075 6.05970 6.22924 6.25353 6.31607 6.38872 6.54996 6.57808 6.60117 6.79990 6.84987 6.89227 6.96826 7.04381 7.32535 7.64017 7.76849 7.81236 8.06898 8.46670 8.57093 9.21158 9.82205 10.40941 11.28613 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.002254 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.183808 B =12417.231396 C =13255.561284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.134 3.866 4 C 0.349 3.651 5 N -0.534 5.534 6 C 0.169 3.831 7 C -0.267 4.267 8 C 0.428 3.572 9 N -0.666 5.666 10 C 0.688 3.312 11 O -0.521 6.521 12 N -0.733 5.733 13 C 0.168 3.832 14 C -0.139 4.139 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.253 4.253 18 H 0.064 0.936 19 C 0.004 3.996 20 N -0.906 5.906 21 Si 0.906 3.094 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.175 3.825 26 C -0.146 4.146 27 N -0.490 5.490 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.172 0.828 34 H 0.149 0.851 35 H 0.415 0.585 36 H 0.392 0.608 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.255 0.745 43 H 0.021 0.979 44 H 0.093 0.907 45 H 0.054 0.946 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -1.430 -24.477 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.056 3.944 4 C 0.080 3.920 5 N -0.252 5.252 6 C 0.005 3.995 7 C -0.294 4.294 8 C 0.186 3.814 9 N -0.314 5.314 10 C 0.387 3.613 11 O -0.390 6.390 12 N -0.387 5.387 13 C 0.065 3.935 14 C -0.180 4.180 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.383 4.383 18 H 0.081 0.919 19 C -0.195 4.195 20 N -0.550 5.550 21 Si 0.735 3.265 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.049 3.951 26 C -0.187 4.187 27 N -0.211 5.211 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.189 0.811 34 H 0.166 0.834 35 H 0.252 0.748 36 H 0.225 0.775 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.112 0.888 45 H 0.073 0.927 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.731 -1.515 -24.127 24.186 hybrid contribution 2.288 0.356 0.842 2.464 sum 3.019 -1.159 -23.285 23.508 Atomic orbital electron populations 1.22778 0.80049 1.03099 1.00310 1.87910 1.20296 1.26257 1.95535 1.20941 0.84921 0.86112 1.02410 1.22590 0.96628 0.90126 0.82698 1.68196 1.10167 1.16751 1.30082 1.22958 0.89231 0.89316 0.97973 1.22259 1.02580 1.11828 0.92707 1.18366 0.88828 0.89080 0.85134 1.42870 1.11782 1.73481 1.03313 1.16141 0.86010 0.79071 0.80086 1.91072 1.10704 1.52544 1.84696 1.45648 1.10158 1.77659 1.05256 1.21002 0.95609 0.96903 0.79981 1.22397 1.01009 0.95262 0.99317 1.20885 0.93181 0.96816 0.87044 1.44047 1.64717 1.08475 1.14316 1.19135 1.41013 0.93791 0.84355 0.91851 1.25184 0.99753 0.96971 0.97550 1.69945 1.48464 1.11077 1.25520 0.86328 0.79006 0.78579 0.82543 1.20841 1.21600 1.21027 1.20761 0.96340 0.85358 0.92668 1.22576 0.99959 0.98936 0.97185 1.68265 1.07116 1.15998 1.29754 0.89347 0.93469 0.93831 0.90084 0.90522 0.81064 0.83363 0.74824 0.77524 0.89826 0.92440 0.92700 0.96093 0.92568 0.93483 0.96053 0.88840 0.92739 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.99 10.69 -35.23 -0.38 -5.36 16 3 C 0.13 1.62 6.37 36.01 0.23 1.85 16 4 C 0.35 4.83 7.27 -157.24 -1.14 3.69 16 5 N -0.53 -6.43 10.33 -10.80 -0.11 -6.54 16 6 C 0.17 1.48 11.29 -17.27 -0.20 1.28 16 7 C -0.27 -2.25 10.04 -39.12 -0.39 -2.65 16 8 C 0.43 5.30 7.45 -154.42 -1.15 4.15 16 9 N -0.67 -7.31 5.39 -15.67 -0.08 -7.39 16 10 C 0.69 10.33 8.49 -86.91 -0.74 9.59 16 11 O -0.52 -10.23 14.31 5.31 0.08 -10.15 16 12 N -0.73 -9.94 5.08 -58.64 -0.30 -10.24 16 13 C 0.17 2.90 2.42 -67.89 -0.16 2.74 16 14 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 15 C 0.15 3.19 6.52 -3.71 -0.02 3.16 16 16 N -0.59 -14.73 2.99 -172.31 -0.51 -15.24 16 17 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 18 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 19 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 20 N -0.91 -25.95 11.04 55.49 0.61 -25.34 16 21 Si 0.91 21.43 29.57 -169.99 -5.03 16.40 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.18 4.08 5.25 -3.71 -0.02 4.06 16 26 C -0.15 -2.62 5.55 -26.61 -0.15 -2.77 16 27 N -0.49 -7.60 7.94 -9.89 -0.08 -7.68 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.42 2.65 8.74 -40.82 -0.36 2.30 16 36 H 0.39 3.97 8.62 -40.82 -0.35 3.62 16 37 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 2.42 6.11 -51.93 -0.32 2.10 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 381.41 15.07 5.75 5.75 Total: -1.00 -35.93 381.41 -9.94 -45.87 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.87 Total: 3.09 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: -3.02 Total: 16.82 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -0.47 Total: -72.42 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.30 Total: -15.52 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.93 -9.94 -45.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597080662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.891 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds