Wall clock time and date at job start Tue Mar 31 2020 18:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99893 * 2 1 4 4 C 1.50700 * 109.47288 * 180.02562 * 3 2 1 5 5 N 1.31790 * 119.08753 * 89.99251 * 4 3 2 6 6 C 1.32513 * 120.99049 * 180.02562 * 5 4 3 7 7 C 1.38202 * 119.18196 * 0.02562 * 6 5 4 8 8 C 1.39501 * 118.34052 * 0.27022 * 7 6 5 9 9 N 1.39017 * 120.51999 * 179.70518 * 8 7 6 10 10 C 1.34784 * 119.99559 * 174.78454 * 9 8 7 11 11 O 1.21567 * 120.00173 * 5.00258 * 10 9 8 12 12 N 1.34773 * 119.99630 * 184.99487 * 10 9 8 13 13 C 1.46505 * 119.99648 * 180.02562 * 12 10 9 14 14 C 1.53039 * 109.45850 * 275.02531 * 13 12 10 15 15 C 1.53193 * 109.31074 * 178.60077 * 14 13 12 16 16 N 1.46935 * 108.76290 * 54.65823 * 15 14 13 17 17 C 1.36933 * 120.63004 * 126.35897 * 16 15 14 18 18 H 1.08002 * 120.00163 * 328.39611 * 17 16 15 19 19 C 1.38816 * 120.00205 * 148.38513 * 17 16 15 20 20 N 1.31617 * 119.99797 * 349.81638 * 19 17 16 21 21 Si 1.86794 * 120.00343 * 169.81237 * 19 17 16 22 22 H 1.48504 * 109.46813 * 60.00169 * 21 19 17 23 23 H 1.48495 * 109.47456 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47068 * 300.00805 * 21 19 17 25 25 C 1.46926 * 118.73794 * 306.38193 * 16 15 14 26 26 C 1.53041 * 109.45701 * 154.97438 * 13 12 10 27 27 N 1.31748 * 119.08054 * 270.02140 * 4 3 2 28 28 H 1.08997 * 109.46906 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47239 * 300.00480 * 1 2 3 30 30 H 1.09000 * 109.46659 * 60.00416 * 1 2 3 31 31 H 1.08998 * 109.47351 * 59.99392 * 3 2 1 32 32 H 1.09003 * 109.46964 * 299.99613 * 3 2 1 33 33 H 1.07992 * 120.40854 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.82730 * 179.97438 * 7 6 5 35 35 H 0.96996 * 120.00456 * 354.78755 * 9 8 7 36 36 H 0.97000 * 120.00187 * 359.97438 * 12 10 9 37 37 H 1.08997 * 109.45858 * 35.00298 * 13 12 10 38 38 H 1.08999 * 109.49826 * 298.56535 * 14 13 12 39 39 H 1.09000 * 109.49634 * 58.66472 * 14 13 12 40 40 H 1.09002 * 109.60186 * 294.87255 * 15 14 13 41 41 H 1.08995 * 109.70460 * 174.50405 * 15 14 13 42 42 H 0.96992 * 120.00353 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.58821 * 293.82196 * 25 16 15 44 44 H 1.09004 * 109.70007 * 173.46780 * 25 16 15 45 45 H 1.09007 * 109.49684 * 301.33438 * 26 13 12 46 46 H 1.08996 * 109.50245 * 61.43266 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.1508 1.1360 -1.1526 6 6 5.4710 1.0310 -1.1972 7 6 6.1827 0.9735 -0.0139 8 6 5.4754 1.0232 1.1875 9 7 6.1452 0.9626 2.4041 10 6 5.4638 1.1169 3.5568 11 8 4.2525 1.2180 3.5381 12 7 6.1255 1.1590 4.7302 13 6 5.3849 1.3262 5.9831 14 6 5.1392 2.8155 6.2353 15 6 4.3345 2.9844 7.5279 16 7 5.0406 2.2966 8.6175 17 6 5.3521 2.9591 9.7747 18 1 5.5671 4.0173 9.7500 19 6 5.3913 2.2709 10.9796 20 7 4.9383 1.0370 11.0476 21 14 6.0871 3.0957 12.5043 22 1 5.2959 4.3140 12.8126 23 1 6.0166 2.1556 13.6515 24 1 7.5024 3.4734 12.2605 25 6 5.4065 0.8845 8.4416 26 6 6.1988 0.7392 7.1386 27 7 4.1514 1.1353 1.1505 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 5.9844 0.9908 -2.1464 34 1 7.2593 0.8875 -0.0192 35 1 7.1027 0.8094 2.4236 36 1 7.0920 1.0779 4.7451 37 1 4.4290 0.8073 5.9119 38 1 6.0949 3.3307 6.3315 39 1 4.5798 3.2383 5.4008 40 1 3.3438 2.5478 7.4016 41 1 4.2393 4.0439 7.7657 42 1 4.9660 0.5559 11.8894 43 1 4.5032 0.2767 8.3897 44 1 6.0199 0.5566 9.2809 45 1 6.3937 -0.3161 6.9471 46 1 7.1444 1.2741 7.2262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597080662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:43 Heat of formation + Delta-G solvation = -8.433208 kcal Electronic energy + Delta-G solvation = -28636.112706 eV Core-core repulsion = 24561.586032 eV Total energy + Delta-G solvation = -4074.526674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.39452 -41.10497 -39.22422 -38.75396 -36.65505 -35.92742 -34.33272 -33.91670 -32.67906 -31.70012 -30.96778 -29.21958 -27.08006 -26.84016 -25.49754 -24.02599 -23.82590 -23.44313 -22.07952 -21.12480 -19.87968 -19.18372 -18.63014 -17.99316 -17.63825 -17.06565 -16.77711 -16.64558 -16.47240 -16.43588 -16.12557 -15.73537 -15.45050 -15.34963 -15.20217 -14.87311 -14.72220 -14.35509 -14.07591 -13.64045 -13.28994 -13.23589 -12.92917 -12.78500 -12.61646 -12.55689 -12.38947 -12.21990 -12.03347 -11.88178 -11.82110 -11.58651 -11.47790 -11.31092 -11.16095 -10.76791 -10.56201 -10.15337 -10.07665 -9.74129 -8.65343 -7.87040 -5.38799 -0.20587 0.18267 1.25723 1.49040 1.50605 1.57643 2.02422 2.39551 2.51450 2.79257 2.96156 3.29054 3.34556 3.40483 3.66436 3.72591 3.88329 4.04339 4.08996 4.22502 4.29959 4.32522 4.44146 4.46889 4.50861 4.53699 4.57104 4.64554 4.79312 4.82625 4.85284 4.98750 5.04152 5.07253 5.15384 5.28598 5.46995 5.49856 5.53287 5.57732 5.64436 5.74623 6.05128 6.14424 6.41494 6.85852 7.15754 7.20329 7.48839 7.83170 8.37670 9.19451 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.002254 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.183808 B =12417.231396 C =13255.561284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.135 3.865 4 C 0.324 3.676 5 N -0.544 5.544 6 C 0.164 3.836 7 C -0.238 4.238 8 C 0.396 3.604 9 N -0.647 5.647 10 C 0.689 3.311 11 O -0.573 6.573 12 N -0.716 5.716 13 C 0.182 3.818 14 C -0.123 4.123 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.265 4.265 18 H 0.067 0.933 19 C -0.048 4.048 20 N -0.937 5.937 21 Si 0.972 3.028 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.179 3.821 26 C -0.127 4.127 27 N -0.537 5.537 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.218 0.782 34 H 0.198 0.802 35 H 0.438 0.562 36 H 0.413 0.587 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.005 0.995 41 H 0.057 0.943 42 H 0.251 0.749 43 H -0.008 1.008 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 -0.983 -26.721 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C 0.057 3.943 4 C 0.055 3.945 5 N -0.263 5.263 6 C 0.001 3.999 7 C -0.263 4.263 8 C 0.155 3.845 9 N -0.298 5.298 10 C 0.388 3.612 11 O -0.446 6.446 12 N -0.372 5.372 13 C 0.077 3.923 14 C -0.163 4.163 15 C 0.019 3.981 16 N -0.333 5.333 17 C -0.395 4.395 18 H 0.084 0.916 19 C -0.244 4.244 20 N -0.583 5.583 21 Si 0.800 3.200 22 H -0.204 1.204 23 H -0.220 1.220 24 H -0.199 1.199 25 C 0.053 3.947 26 C -0.167 4.167 27 N -0.259 5.259 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.235 0.765 34 H 0.215 0.785 35 H 0.279 0.721 36 H 0.250 0.750 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.023 0.977 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.010 0.990 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.641 -1.065 -26.435 26.706 hybrid contribution 1.376 0.208 1.430 1.995 sum 5.016 -0.857 -25.005 25.518 Atomic orbital electron populations 1.22977 0.78303 1.04150 1.01323 1.87856 1.22377 1.27072 1.95710 1.20983 0.84832 0.85837 1.02659 1.22766 0.97259 0.91526 0.82986 1.68233 1.12061 1.16771 1.29211 1.23826 0.88240 0.87793 1.00041 1.22719 1.04688 1.08315 0.90619 1.18835 0.88610 0.90559 0.86502 1.42493 1.12643 1.72895 1.01818 1.16269 0.85477 0.78439 0.81042 1.91055 1.13218 1.54707 1.85603 1.45151 1.10962 1.77360 1.03753 1.20536 0.94743 0.95680 0.81366 1.22171 1.00770 0.96197 0.97143 1.20955 0.92860 0.96393 0.87885 1.44297 1.65387 1.08972 1.14599 1.19476 1.40525 0.94168 0.85361 0.91575 1.25955 1.00445 0.97582 1.00377 1.70125 1.49873 1.12430 1.25856 0.85281 0.78650 0.77417 0.78685 1.20387 1.22043 1.19915 1.20575 0.95298 0.84278 0.94561 1.22271 0.99315 1.00760 0.94312 1.68139 1.09308 1.17341 1.31086 0.88321 0.93544 0.91702 0.91446 0.88498 0.76527 0.78529 0.72057 0.74966 0.92729 0.91280 0.92669 0.97742 0.92444 0.93967 0.98979 0.91569 0.90419 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.41 -11.08 10.69 -148.98 -1.59 -12.68 16 3 C 0.13 3.38 6.37 71.24 0.45 3.83 16 4 C 0.32 9.00 7.27 138.77 1.01 10.01 16 5 N -0.54 -12.28 10.33 -188.07 -1.94 -14.23 16 6 C 0.16 2.29 11.29 84.58 0.96 3.24 16 7 C -0.24 -3.08 10.04 22.57 0.23 -2.85 16 8 C 0.40 9.08 7.45 132.99 0.99 10.08 16 9 N -0.65 -12.74 5.39 -321.75 -1.73 -14.47 16 10 C 0.69 19.98 8.49 179.05 1.52 21.50 16 11 O -0.57 -22.99 14.31 -3.93 -0.06 -23.04 16 12 N -0.72 -18.06 5.08 -457.70 -2.33 -20.39 16 13 C 0.18 6.16 2.42 45.02 0.11 6.27 16 14 C -0.12 -4.42 5.65 30.67 0.17 -4.24 16 15 C 0.15 6.39 6.52 86.36 0.56 6.96 16 16 N -0.61 -30.82 2.99 -699.07 -2.09 -32.90 16 17 C -0.27 -14.52 9.58 84.03 0.81 -13.72 16 18 H 0.07 3.51 7.85 -2.91 -0.02 3.49 16 19 C -0.05 -2.67 5.06 84.86 0.43 -2.24 16 20 N -0.94 -55.14 11.04 21.65 0.24 -54.90 16 21 Si 0.97 44.31 29.57 68.60 2.03 46.33 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 25 C 0.18 8.54 5.25 86.36 0.45 8.99 16 26 C -0.13 -4.40 5.55 30.67 0.17 -4.23 16 27 N -0.54 -16.74 7.94 -185.21 -1.47 -18.21 16 28 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.22 0.87 8.06 -2.91 -0.02 0.84 16 34 H 0.20 0.52 8.06 -2.91 -0.02 0.49 16 35 H 0.44 3.95 8.74 -92.71 -0.81 3.14 16 36 H 0.41 6.97 8.62 -92.71 -0.80 6.17 16 37 H 0.05 2.21 7.58 -2.39 -0.02 2.20 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.00 0.21 8.14 -2.39 -0.02 0.20 16 41 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 42 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 43 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.07 3.52 6.11 -2.38 -0.01 3.50 16 45 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 46 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -83.05 381.41 -0.43 -83.48 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -0.59 Total: 15.66 kcal Atomic # 6 Polarization: 36.24 SS G_CDS: 9.11 Total: 45.35 kcal Atomic # 7 Polarization: -145.78 SS G_CDS: -9.32 Total: -155.10 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -1.65 Total: -35.72 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -83.05 -0.43 -83.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597080662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.043 kcal (2) G-P(sol) polarization free energy of solvation -83.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds