Wall clock time and date at job start Tue Mar 31 2020 18:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 120.00079 * 2 1 4 4 O 1.21285 * 119.99976 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00430 * 180.02562 * 3 2 1 6 6 H 1.09009 * 109.49609 * 59.93064 * 5 3 2 7 7 C 1.53033 * 109.50381 * 179.97438 * 5 3 2 8 8 C 1.53042 * 109.54300 * 181.34628 * 7 5 3 9 9 C 1.53186 * 109.31159 * 298.63720 * 8 7 5 10 10 N 1.46933 * 108.77853 * 54.63614 * 9 8 7 11 11 C 1.34771 * 120.63201 * 126.36165 * 10 9 8 12 12 O 1.21593 * 119.99599 * 185.23039 * 11 10 9 13 13 N 1.34773 * 120.00320 * 5.22975 * 11 10 9 14 14 C 1.40193 * 120.00060 * 174.86493 * 13 11 10 15 15 C 1.40400 * 125.97452 * 0.02562 * 14 13 11 16 16 C 1.35240 * 107.87121 * 179.73362 * 15 14 13 17 17 N 1.34971 * 107.85631 * 0.36648 * 16 15 14 18 18 C 1.46493 * 125.97393 * 179.89576 * 17 16 15 19 19 C 1.50703 * 109.47161 * 124.71670 * 18 17 16 20 20 H 1.08005 * 119.99759 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00426 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00082 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00365 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47063 * 60.00326 * 23 21 19 25 25 H 1.48504 * 109.47347 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47221 * 300.00119 * 23 21 19 27 27 N 1.31211 * 125.97094 * 179.97438 * 14 13 11 28 28 C 1.46930 * 118.73224 * 306.64397 * 10 9 8 29 29 H 1.09001 * 109.47767 * 60.00051 * 1 2 3 30 30 H 1.08999 * 109.47425 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47018 * 299.99425 * 1 2 3 32 32 H 0.97000 * 120.00241 * 180.02562 * 2 1 3 33 33 H 1.09011 * 109.45526 * 61.32629 * 7 5 3 34 34 H 1.09006 * 109.46393 * 301.37421 * 7 5 3 35 35 H 1.08998 * 109.49711 * 178.68687 * 8 7 5 36 36 H 1.09002 * 109.49266 * 58.58749 * 8 7 5 37 37 H 1.08992 * 109.58948 * 294.84551 * 9 8 7 38 38 H 1.09007 * 109.58511 * 174.41765 * 9 8 7 39 39 H 0.97003 * 119.99911 * 354.87359 * 13 11 10 40 40 H 1.08003 * 126.06522 * 359.96535 * 15 14 13 41 41 H 1.08003 * 126.07679 * 180.25388 * 16 15 14 42 42 H 1.09004 * 109.47374 * 244.71372 * 18 17 16 43 43 H 1.09001 * 109.47747 * 4.71636 * 18 17 16 44 44 H 0.96997 * 120.00734 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.58410 * 173.14155 * 28 10 9 46 46 H 1.09007 * 109.58464 * 293.56512 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1673 -0.0006 6 1 4.0093 0.6526 -0.8901 7 6 4.1567 2.6098 -0.0011 8 6 5.6867 2.6111 -0.0356 9 6 6.2222 1.9090 1.2162 10 7 5.6217 0.5707 1.3013 11 6 6.3983 -0.5241 1.4221 12 8 5.8965 -1.6313 1.3960 13 7 7.7311 -0.3916 1.5719 14 6 8.5261 -1.5225 1.8053 15 6 8.0684 -2.8460 1.9055 16 6 9.1403 -3.6402 2.1273 17 7 10.2358 -2.8532 2.1749 18 6 11.6112 -3.3053 2.3982 19 6 12.4869 -2.8268 1.2690 20 1 12.0613 -2.2444 0.4651 21 6 13.8313 -3.1323 1.2620 22 7 14.3497 -3.8410 2.2411 23 14 14.9166 -2.5397 -0.1381 24 1 14.8856 -1.0561 -0.1946 25 1 16.3109 -2.9979 0.0882 26 1 14.4160 -3.0945 -1.4215 27 7 9.8282 -1.5292 1.9674 28 6 4.1585 0.4482 1.2459 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 3.8133 3.1169 0.9007 34 1 3.7732 3.1306 -0.8786 35 1 6.0492 3.6387 -0.0595 36 1 6.0309 2.0825 -0.9246 37 1 5.9553 2.4862 2.1013 38 1 7.3065 1.8193 1.1491 39 1 8.1404 0.4862 1.5184 40 1 7.0427 -3.1725 1.8170 41 1 9.1228 -4.7135 2.2471 42 1 11.9789 -2.8988 3.3404 43 1 11.6337 -4.3943 2.4390 44 1 15.2955 -4.0563 2.2361 45 1 3.8816 -0.6049 1.1985 46 1 3.7198 0.9040 2.1336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610325968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:48 Heat of formation + Delta-G solvation = 24.442628 kcal Electronic energy + Delta-G solvation = -28495.455439 eV Core-core repulsion = 24422.354368 eV Total energy + Delta-G solvation = -4073.101071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.12604 -40.41620 -39.62160 -37.45024 -35.03928 -34.87814 -33.56962 -32.95091 -31.82921 -30.78310 -29.29851 -27.38974 -26.80789 -25.58984 -24.26265 -23.04544 -21.99594 -21.15441 -20.52598 -20.07733 -19.22036 -18.32233 -17.40164 -16.74174 -16.57365 -16.34897 -16.05648 -15.70178 -15.45002 -14.89650 -14.68552 -14.55372 -14.36976 -14.24432 -13.95746 -13.67823 -13.36710 -13.24097 -12.89566 -12.79001 -12.66752 -12.32406 -12.24288 -11.91114 -11.79582 -11.36608 -11.33853 -11.06397 -11.02756 -10.87083 -10.46493 -10.27951 -10.24180 -10.08047 -9.70889 -9.54123 -9.50826 -8.96835 -8.63112 -8.11816 -7.43000 -6.24453 -4.29625 2.09482 2.34690 2.61852 2.83039 3.05461 3.24993 3.28365 3.31107 3.36192 3.79308 4.01787 4.20263 4.29405 4.34044 4.45486 4.57950 4.65484 4.82151 4.91294 5.05182 5.10154 5.10549 5.15395 5.31038 5.38770 5.40199 5.41834 5.51708 5.58818 5.73164 5.79954 5.91297 5.99669 6.04750 6.28229 6.52086 6.56893 6.79305 6.94743 7.04376 7.07672 7.46300 7.67980 7.76531 7.80997 7.91930 8.05632 8.49215 8.64708 8.79983 9.35881 10.84139 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.002144 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.444862 B =13058.093060 C =13764.296914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.735 5.735 3 C 0.522 3.478 4 O -0.537 6.537 5 C -0.125 4.125 6 H 0.104 0.896 7 C -0.098 4.098 8 C -0.136 4.136 9 C 0.106 3.894 10 N -0.626 5.626 11 C 0.719 3.281 12 O -0.566 6.566 13 N -0.642 5.642 14 C 0.274 3.726 15 C -0.286 4.286 16 C 0.051 3.949 17 N -0.320 5.320 18 C 0.259 3.741 19 C -0.528 4.528 20 H 0.068 0.932 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 N -0.307 5.307 28 C 0.143 3.857 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.406 0.594 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.406 0.594 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.268 0.732 45 H 0.100 0.900 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.650 9.320 -2.993 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.387 5.387 3 C 0.308 3.692 4 O -0.413 6.413 5 C -0.148 4.148 6 H 0.122 0.878 7 C -0.136 4.136 8 C -0.174 4.174 9 C -0.018 4.018 10 N -0.364 5.364 11 C 0.420 3.580 12 O -0.442 6.442 13 N -0.294 5.294 14 C 0.020 3.980 15 C -0.318 4.318 16 C -0.099 4.099 17 N -0.102 5.102 18 C 0.141 3.859 19 C -0.567 4.567 20 H 0.086 0.914 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.735 3.265 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 N -0.138 5.138 28 C 0.019 3.981 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.240 0.760 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.244 0.756 40 H 0.177 0.823 41 H 0.185 0.815 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.119 0.881 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.105 9.846 -2.838 25.275 hybrid contribution 0.461 -0.193 -0.837 0.975 sum -22.644 9.653 -3.675 24.889 Atomic orbital electron populations 1.21553 0.79502 1.02414 1.02308 1.45895 1.07969 1.09004 1.75851 1.20493 0.89656 0.83607 0.75494 1.90710 1.70270 1.31299 1.49012 1.21713 0.91533 1.00051 1.01487 0.87762 1.21327 0.94593 0.93759 1.03926 1.21963 0.95741 1.01479 0.98237 1.21762 0.98006 0.83127 0.98858 1.47129 1.05917 1.05286 1.78117 1.15469 0.80539 0.84131 0.77864 1.90851 1.72867 1.23310 1.57134 1.41567 1.04857 1.08686 1.74309 1.18794 0.89731 0.86849 1.02602 1.21480 1.00625 0.90355 1.19293 1.22555 0.86797 0.98148 1.02365 1.49063 1.08517 1.01946 1.50656 1.19732 0.71798 0.95738 0.98601 1.21217 0.93075 1.34966 1.07429 0.91379 1.24945 0.97722 0.94832 0.96602 1.69906 1.13800 1.37933 1.31720 0.86386 0.78914 0.79332 0.81845 1.19952 1.21059 1.20059 1.77325 1.08573 1.00605 1.27320 1.21221 0.78671 1.02258 0.95911 0.92238 0.90500 0.92148 0.75996 0.90798 0.90694 0.89840 0.91029 0.90644 0.89987 0.75645 0.82253 0.81525 0.93737 0.92540 0.92277 0.88145 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.70 59.84 0.64 1.11 16 2 N -0.74 -4.79 5.62 -67.08 -0.38 -5.16 16 3 C 0.52 4.62 7.16 -10.99 -0.08 4.54 16 4 O -0.54 -6.64 15.98 5.55 0.09 -6.55 16 5 C -0.13 -0.95 2.66 -91.88 -0.24 -1.19 16 6 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 7 C -0.10 -0.72 4.46 -26.69 -0.12 -0.84 16 8 C -0.14 -0.87 6.08 -26.61 -0.16 -1.03 16 9 C 0.11 0.78 6.39 -3.71 -0.02 0.76 16 10 N -0.63 -6.28 2.98 -178.76 -0.53 -6.81 16 11 C 0.72 10.23 8.26 -86.93 -0.72 9.51 16 12 O -0.57 -9.55 12.91 5.28 0.07 -9.48 16 13 N -0.64 -9.87 5.36 -15.51 -0.08 -9.95 16 14 C 0.27 5.43 8.11 -154.36 -1.25 4.18 16 15 C -0.29 -5.59 9.61 -39.84 -0.38 -5.97 16 16 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 17 N -0.32 -7.36 3.67 -62.56 -0.23 -7.59 16 18 C 0.26 6.52 6.26 -5.20 -0.03 6.49 16 19 C -0.53 -14.59 9.24 -34.44 -0.32 -14.91 16 20 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.90 -25.17 13.29 55.43 0.74 -24.43 16 23 Si 0.91 21.22 29.54 -169.99 -5.02 16.19 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 N -0.31 -6.99 12.42 31.44 0.39 -6.60 16 28 C 0.14 1.20 5.55 -3.93 -0.02 1.18 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.41 1.89 8.37 -40.82 -0.34 1.55 16 33 H 0.07 0.57 8.13 -51.92 -0.42 0.15 16 34 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.58 5.65 -51.93 -0.29 0.29 16 39 H 0.41 5.17 6.31 -40.82 -0.26 4.91 16 40 H 0.16 3.02 5.93 -52.48 -0.31 2.71 16 41 H 0.17 2.67 8.06 -52.48 -0.42 2.25 16 42 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.10 0.89 6.59 -51.93 -0.34 0.54 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -34.71 379.02 -8.83 -43.54 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.58 Total: 4.89 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -3.01 Total: 6.24 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.09 Total: -60.55 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.16 Total: -16.03 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.71 -8.83 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610325968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.983 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds