Wall clock time and date at job start Tue Mar 31 2020 18:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 120.00079 * 2 1 4 4 O 1.21285 * 119.99976 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00430 * 180.02562 * 3 2 1 6 6 H 1.09009 * 109.49609 * 59.93064 * 5 3 2 7 7 C 1.53033 * 109.50381 * 179.97438 * 5 3 2 8 8 C 1.53042 * 109.54300 * 181.34628 * 7 5 3 9 9 C 1.53186 * 109.31159 * 298.63720 * 8 7 5 10 10 N 1.46933 * 108.77853 * 54.63614 * 9 8 7 11 11 C 1.34771 * 120.63201 * 126.36165 * 10 9 8 12 12 O 1.21593 * 119.99599 * 185.23039 * 11 10 9 13 13 N 1.34773 * 120.00320 * 5.22975 * 11 10 9 14 14 C 1.40193 * 120.00060 * 174.86493 * 13 11 10 15 15 C 1.40400 * 125.97452 * 0.02562 * 14 13 11 16 16 C 1.35240 * 107.87121 * 179.73362 * 15 14 13 17 17 N 1.34971 * 107.85631 * 0.36648 * 16 15 14 18 18 C 1.46493 * 125.97393 * 179.89576 * 17 16 15 19 19 C 1.50703 * 109.47161 * 124.71670 * 18 17 16 20 20 H 1.08005 * 119.99759 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00426 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00082 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00365 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47063 * 60.00326 * 23 21 19 25 25 H 1.48504 * 109.47347 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47221 * 300.00119 * 23 21 19 27 27 N 1.31211 * 125.97094 * 179.97438 * 14 13 11 28 28 C 1.46930 * 118.73224 * 306.64397 * 10 9 8 29 29 H 1.09001 * 109.47767 * 60.00051 * 1 2 3 30 30 H 1.08999 * 109.47425 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47018 * 299.99425 * 1 2 3 32 32 H 0.97000 * 120.00241 * 180.02562 * 2 1 3 33 33 H 1.09011 * 109.45526 * 61.32629 * 7 5 3 34 34 H 1.09006 * 109.46393 * 301.37421 * 7 5 3 35 35 H 1.08998 * 109.49711 * 178.68687 * 8 7 5 36 36 H 1.09002 * 109.49266 * 58.58749 * 8 7 5 37 37 H 1.08992 * 109.58948 * 294.84551 * 9 8 7 38 38 H 1.09007 * 109.58511 * 174.41765 * 9 8 7 39 39 H 0.97003 * 119.99911 * 354.87359 * 13 11 10 40 40 H 1.08003 * 126.06522 * 359.96535 * 15 14 13 41 41 H 1.08003 * 126.07679 * 180.25388 * 16 15 14 42 42 H 1.09004 * 109.47374 * 244.71372 * 18 17 16 43 43 H 1.09001 * 109.47747 * 4.71636 * 18 17 16 44 44 H 0.96997 * 120.00734 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.58410 * 173.14155 * 28 10 9 46 46 H 1.09007 * 109.58464 * 293.56512 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1673 -0.0006 6 1 4.0093 0.6526 -0.8901 7 6 4.1567 2.6098 -0.0011 8 6 5.6867 2.6111 -0.0356 9 6 6.2222 1.9090 1.2162 10 7 5.6217 0.5707 1.3013 11 6 6.3983 -0.5241 1.4221 12 8 5.8965 -1.6313 1.3960 13 7 7.7311 -0.3916 1.5719 14 6 8.5261 -1.5225 1.8053 15 6 8.0684 -2.8460 1.9055 16 6 9.1403 -3.6402 2.1273 17 7 10.2358 -2.8532 2.1749 18 6 11.6112 -3.3053 2.3982 19 6 12.4869 -2.8268 1.2690 20 1 12.0613 -2.2444 0.4651 21 6 13.8313 -3.1323 1.2620 22 7 14.3497 -3.8410 2.2411 23 14 14.9166 -2.5397 -0.1381 24 1 14.8856 -1.0561 -0.1946 25 1 16.3109 -2.9979 0.0882 26 1 14.4160 -3.0945 -1.4215 27 7 9.8282 -1.5292 1.9674 28 6 4.1585 0.4482 1.2459 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 3.8133 3.1169 0.9007 34 1 3.7732 3.1306 -0.8786 35 1 6.0492 3.6387 -0.0595 36 1 6.0309 2.0825 -0.9246 37 1 5.9553 2.4862 2.1013 38 1 7.3065 1.8193 1.1491 39 1 8.1404 0.4862 1.5184 40 1 7.0427 -3.1725 1.8170 41 1 9.1228 -4.7135 2.2471 42 1 11.9789 -2.8988 3.3404 43 1 11.6337 -4.3943 2.4390 44 1 15.2955 -4.0563 2.2361 45 1 3.8816 -0.6049 1.1985 46 1 3.7198 0.9040 2.1336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610325968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:47 Heat of formation + Delta-G solvation = 0.812493 kcal Electronic energy + Delta-G solvation = -28496.480118 eV Core-core repulsion = 24422.354368 eV Total energy + Delta-G solvation = -4074.125751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31840 -41.54227 -40.64113 -38.32004 -36.28617 -35.66147 -35.33009 -34.01935 -32.66478 -32.30783 -30.89628 -28.61289 -27.91278 -26.57360 -25.06406 -24.67710 -22.99166 -22.25381 -21.79543 -21.03945 -20.33613 -19.29691 -18.66491 -18.28856 -17.92506 -17.29187 -17.02522 -16.77128 -16.46595 -16.35317 -15.87392 -15.58062 -15.43534 -15.21418 -14.97494 -14.58325 -14.39650 -14.31360 -14.08440 -13.91483 -13.74273 -13.63372 -13.48872 -13.08163 -12.91846 -12.71463 -12.53731 -12.26969 -12.08291 -12.00028 -11.96044 -11.66495 -11.59450 -11.38598 -11.09336 -10.90962 -10.70215 -10.15249 -9.88393 -9.66793 -9.01943 -8.30819 -6.44991 1.03678 1.11653 1.39633 1.41400 1.50114 1.54564 1.70658 2.01089 2.27595 2.36703 2.39979 2.81074 3.00632 3.58354 3.65839 3.80250 3.95722 4.00531 4.07563 4.24356 4.29454 4.45477 4.48150 4.50746 4.63382 4.68696 4.74887 4.77438 4.87127 4.92955 4.95615 4.97536 5.02908 5.05734 5.14363 5.18768 5.35155 5.43597 5.47999 5.57748 5.69507 5.85710 5.98748 6.31605 6.47938 6.58558 6.68556 7.12481 7.18424 7.24755 7.35997 8.76226 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.002144 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.444862 B =13058.093060 C =13764.296914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.726 5.726 3 C 0.521 3.479 4 O -0.575 6.575 5 C -0.116 4.116 6 H 0.109 0.891 7 C -0.096 4.096 8 C -0.127 4.127 9 C 0.099 3.901 10 N -0.614 5.614 11 C 0.716 3.284 12 O -0.594 6.594 13 N -0.637 5.637 14 C 0.284 3.716 15 C -0.290 4.290 16 C 0.056 3.944 17 N -0.345 5.345 18 C 0.273 3.727 19 C -0.546 4.546 20 H 0.052 0.948 21 C 0.018 3.982 22 N -0.920 5.920 23 Si 0.971 3.029 24 H -0.273 1.273 25 H -0.274 1.274 26 H -0.270 1.270 27 N -0.348 5.348 28 C 0.144 3.856 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.052 0.948 32 H 0.416 0.584 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.417 0.583 40 H 0.169 0.831 41 H 0.201 0.799 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.272 0.728 45 H 0.097 0.903 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.371 9.763 -3.787 26.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.378 5.378 3 C 0.307 3.693 4 O -0.455 6.455 5 C -0.138 4.138 6 H 0.127 0.873 7 C -0.134 4.134 8 C -0.166 4.166 9 C -0.023 4.023 10 N -0.351 5.351 11 C 0.418 3.582 12 O -0.472 6.472 13 N -0.291 5.291 14 C 0.028 3.972 15 C -0.322 4.322 16 C -0.093 4.093 17 N -0.127 5.127 18 C 0.154 3.846 19 C -0.585 4.585 20 H 0.071 0.929 21 C -0.183 4.183 22 N -0.559 5.559 23 Si 0.795 3.205 24 H -0.198 1.198 25 H -0.199 1.199 26 H -0.195 1.195 27 N -0.179 5.179 28 C 0.020 3.980 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.071 0.929 32 H 0.252 0.748 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.257 0.743 40 H 0.186 0.814 41 H 0.217 0.783 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.116 0.884 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.867 10.305 -3.635 26.250 hybrid contribution 0.505 -0.299 -0.575 0.822 sum -23.363 10.006 -4.210 25.762 Atomic orbital electron populations 1.21678 0.78753 1.04140 1.01568 1.45909 1.08600 1.08874 1.74389 1.20671 0.90071 0.83583 0.74985 1.90695 1.70997 1.32691 1.51100 1.21625 0.90741 1.00278 1.01166 0.87331 1.21303 0.95162 0.93348 1.03568 1.21917 0.94887 1.02407 0.97341 1.22033 0.98232 0.81820 1.00262 1.47171 1.06238 1.05198 1.76517 1.15609 0.80158 0.84769 0.77706 1.90819 1.73186 1.24780 1.58404 1.41592 1.05119 1.08102 1.74285 1.19088 0.89274 0.88365 1.00425 1.21672 1.00879 0.90343 1.19274 1.23163 0.85760 0.99649 1.00680 1.48812 1.08305 1.02698 1.52908 1.19321 0.73020 0.95452 0.96795 1.21372 0.94024 1.35266 1.07802 0.92927 1.25739 0.98832 0.94762 0.98944 1.69986 1.14328 1.38506 1.33097 0.85413 0.77450 0.78735 0.78908 1.19806 1.19915 1.19501 1.77243 1.10156 1.00910 1.29630 1.21322 0.77555 1.02371 0.96710 0.92995 0.87577 0.92886 0.74791 0.91076 0.91201 0.87883 0.91499 0.88855 0.89598 0.74273 0.81385 0.78262 0.96096 0.92374 0.91878 0.88435 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.70 127.77 1.37 2.17 16 2 N -0.73 -8.48 5.62 -484.54 -2.72 -11.20 16 3 C 0.52 8.69 7.16 87.66 0.63 9.32 16 4 O -0.58 -13.99 15.98 -3.04 -0.05 -14.03 16 5 C -0.12 -1.58 2.66 -11.61 -0.03 -1.61 16 6 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 7 C -0.10 -1.25 4.46 30.62 0.14 -1.11 16 8 C -0.13 -1.35 6.08 30.67 0.19 -1.16 16 9 C 0.10 1.24 6.39 86.36 0.55 1.79 16 10 N -0.61 -11.18 2.98 -837.73 -2.50 -13.67 16 11 C 0.72 19.37 8.26 179.06 1.48 20.85 16 12 O -0.59 -19.32 12.91 -4.01 -0.05 -19.37 16 13 N -0.64 -18.90 5.36 -321.24 -1.72 -20.62 16 14 C 0.28 11.12 8.11 133.31 1.08 12.20 16 15 C -0.29 -11.11 9.61 22.10 0.21 -10.89 16 16 C 0.06 2.17 11.44 83.52 0.96 3.12 16 17 N -0.35 -16.03 3.67 -351.84 -1.29 -17.32 16 18 C 0.27 14.05 6.26 85.64 0.54 14.58 16 19 C -0.55 -30.58 9.24 25.60 0.24 -30.35 16 20 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 21 C 0.02 0.96 5.46 84.65 0.46 1.43 16 22 N -0.92 -51.88 13.29 21.45 0.28 -51.59 16 23 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 N -0.35 -15.98 12.42 -54.44 -0.68 -16.65 16 28 C 0.14 2.16 5.55 86.22 0.48 2.64 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.42 3.17 8.37 -92.71 -0.78 2.39 16 33 H 0.07 0.99 8.13 -2.38 -0.02 0.97 16 34 H 0.07 1.01 8.07 -2.38 -0.02 0.99 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 1.04 5.65 -2.38 -0.01 1.02 16 39 H 0.42 10.13 6.31 -92.71 -0.59 9.54 16 40 H 0.17 6.17 5.93 -2.91 -0.02 6.15 16 41 H 0.20 6.08 8.06 -2.91 -0.02 6.05 16 42 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.06 2.92 8.07 -2.39 -0.02 2.90 16 44 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 45 H 0.10 1.56 6.59 -2.39 -0.02 1.55 16 46 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -74.93 379.02 1.25 -73.69 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -0.34 Total: 22.54 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 8.28 Total: 22.98 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -8.62 Total: -131.06 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.10 Total: -33.41 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -74.93 1.25 -73.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610325968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.498 kcal (2) G-P(sol) polarization free energy of solvation -74.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds