Wall clock time and date at job start Tue Mar 31 2020 18:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36009 * 116.99831 * 2 1 4 4 C 1.39265 * 120.39214 * 180.02562 * 3 2 1 5 5 C 1.38298 * 118.46493 * 180.02562 * 4 3 2 6 6 C 1.39091 * 119.14962 * 359.97438 * 5 4 3 7 7 N 1.39257 * 119.63964 * 179.97438 * 6 5 4 8 8 N 1.40103 * 119.99650 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99924 * 180.02562 * 8 7 6 10 10 O 1.21591 * 119.99718 * 180.02562 * 9 8 7 11 11 N 1.34771 * 120.00264 * 0.02562 * 9 8 7 12 12 C 1.46504 * 120.00229 * 180.02562 * 11 9 8 13 13 C 1.53037 * 109.45634 * 275.02443 * 12 11 9 14 14 C 1.53196 * 109.31124 * 178.60026 * 13 12 11 15 15 N 1.46925 * 108.76306 * 54.65433 * 14 13 12 16 16 C 1.36943 * 120.62961 * 126.40575 * 15 14 13 17 17 H 1.08001 * 120.00088 * 331.82648 * 16 15 14 18 18 C 1.38810 * 119.99703 * 151.82107 * 16 15 14 19 19 N 1.31614 * 120.00573 * 343.07829 * 18 16 15 20 20 Si 1.86807 * 119.99686 * 163.07590 * 18 16 15 21 21 H 1.48490 * 109.47140 * 90.00194 * 20 18 16 22 22 H 1.48503 * 109.46914 * 210.00459 * 20 18 16 23 23 H 1.48497 * 109.46888 * 330.00222 * 20 18 16 24 24 C 1.46923 * 118.74026 * 306.38474 * 15 14 13 25 25 C 1.53037 * 109.46156 * 154.96914 * 12 11 9 26 26 N 1.32326 * 120.70940 * 359.97438 * 6 5 4 27 27 C 1.31998 * 121.67790 * 0.04014 * 26 6 5 28 28 H 1.09001 * 109.47640 * 59.99748 * 1 2 3 29 29 H 1.09001 * 109.46867 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46784 * 299.99594 * 1 2 3 31 31 H 1.08008 * 120.76470 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.42543 * 179.72180 * 5 4 3 33 33 H 0.96997 * 120.00651 * 0.02562 * 7 6 5 34 34 H 0.97004 * 119.99987 * 0.02562 * 8 7 6 35 35 H 0.97000 * 120.00026 * 359.97438 * 11 9 8 36 36 H 1.08998 * 109.45918 * 34.99317 * 12 11 9 37 37 H 1.08993 * 109.50136 * 298.56121 * 13 12 11 38 38 H 1.08997 * 109.49987 * 58.66395 * 13 12 11 39 39 H 1.09000 * 109.60026 * 294.86694 * 14 13 12 40 40 H 1.08997 * 109.70369 * 174.50818 * 14 13 12 41 41 H 0.96996 * 120.00235 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58849 * 293.81651 * 24 15 14 43 43 H 1.09007 * 109.70167 * 173.46712 * 24 15 14 44 44 H 1.08999 * 109.49997 * 301.34255 * 25 12 11 45 45 H 1.09008 * 109.49622 * 61.43293 * 25 12 11 46 46 H 1.08001 * 119.60995 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4367 1.2943 -0.0005 5 6 4.0227 2.5470 0.0000 6 6 3.2095 3.6754 0.0006 7 7 3.7888 4.9418 0.0017 8 7 2.9767 6.0835 0.0017 9 6 3.5373 7.3091 0.0022 10 8 2.8325 8.2999 0.0027 11 7 4.8790 7.4365 0.0023 12 6 5.4883 8.7688 0.0034 13 6 5.5853 9.2862 -1.4335 14 6 6.1907 10.6935 -1.4255 15 7 7.4740 10.6518 -0.7114 16 6 8.6151 11.1295 -1.2988 17 1 8.7157 11.1152 -2.3740 18 6 9.6425 11.6322 -0.5122 19 7 9.4111 11.9618 0.7408 20 14 11.3535 11.8409 -1.2322 21 1 11.4790 13.1963 -1.8255 22 1 12.3659 11.6747 -0.1585 23 1 11.5758 10.8173 -2.2848 24 6 7.5098 10.0884 0.6450 25 6 6.8894 8.6881 0.6138 26 7 1.8914 3.5585 0.0000 27 6 1.3002 2.3783 -0.0002 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0431 0.4006 -0.0005 32 1 5.0980 2.6478 0.0042 33 1 4.7544 5.0335 0.0017 34 1 2.0110 5.9918 0.0013 35 1 5.4412 6.6460 0.0023 36 1 4.8738 9.4486 0.5935 37 1 6.2202 8.6203 -2.0180 38 1 4.5897 9.3212 -1.8756 39 1 5.5127 11.3802 -0.9187 40 1 6.3530 11.0296 -2.4496 41 1 10.1291 12.3127 1.2905 42 1 6.9395 10.7258 1.3207 43 1 8.5422 10.0231 0.9887 44 1 6.8220 8.2972 1.6290 45 1 7.5119 8.0278 0.0098 46 1 0.2217 2.3217 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780988391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:07 Heat of formation + Delta-G solvation = 43.594642 kcal Electronic energy + Delta-G solvation = -28172.960596 eV Core-core repulsion = 24100.690018 eV Total energy + Delta-G solvation = -4072.270577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.06693 -40.12904 -38.68399 -37.50191 -36.14992 -34.43698 -32.85787 -32.29438 -31.63605 -30.09847 -29.30190 -28.53360 -27.66411 -25.07651 -23.89881 -23.00080 -22.42776 -22.15338 -20.61668 -19.75343 -18.85300 -18.68149 -18.33337 -17.17736 -16.70849 -16.24304 -16.10804 -15.45459 -15.25763 -14.90488 -14.80619 -14.52167 -14.40400 -14.28398 -13.79414 -13.69041 -13.55803 -13.14819 -13.02188 -12.78326 -12.37049 -12.35607 -12.33946 -11.50722 -11.43777 -11.14178 -10.90245 -10.71916 -10.54516 -10.33650 -10.23565 -10.16187 -10.05791 -9.89049 -9.78762 -9.57225 -9.30664 -8.77699 -8.47200 -7.51593 -6.69233 -5.80715 -3.22731 0.74870 1.02412 1.78952 2.82453 3.02250 3.17618 3.36460 3.43541 3.45569 3.46342 3.92994 4.29210 4.47527 4.48577 4.49571 4.70053 4.70849 5.02369 5.07104 5.16515 5.31160 5.37379 5.42567 5.47580 5.57281 5.60925 5.85298 5.90649 6.05973 6.23250 6.25486 6.30235 6.45468 6.55183 6.57055 6.77330 6.81408 6.86960 6.94738 7.04727 7.15250 7.29864 7.58447 7.62950 7.78519 8.14413 8.43492 8.57075 9.19733 9.82951 10.40021 11.28282 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.001935 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.651318 B =14470.008090 C =15119.990051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.015 3.985 4 C -0.055 4.055 5 C -0.190 4.190 6 C 0.378 3.622 7 N -0.527 5.527 8 N -0.530 5.530 9 C 0.709 3.291 10 O -0.575 6.575 11 N -0.736 5.736 12 C 0.167 3.833 13 C -0.140 4.140 14 C 0.147 3.853 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.175 3.825 25 C -0.147 4.147 26 N -0.512 5.512 27 C 0.074 3.926 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.430 0.570 34 H 0.438 0.562 35 H 0.385 0.615 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.056 0.944 41 H 0.254 0.746 42 H 0.022 0.978 43 H 0.092 0.908 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.355 -25.033 -0.016 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C -0.034 4.034 4 C -0.081 4.081 5 C -0.216 4.216 6 C 0.142 3.858 7 N -0.261 5.261 8 N -0.286 5.286 9 C 0.408 3.592 10 O -0.448 6.448 11 N -0.392 5.392 12 C 0.063 3.937 13 C -0.180 4.180 14 C 0.020 3.980 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.048 3.952 25 C -0.187 4.187 26 N -0.231 5.231 27 C -0.084 4.084 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.274 0.726 34 H 0.284 0.716 35 H 0.219 0.781 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.040 0.960 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.129 -23.400 0.103 27.865 hybrid contribution 1.385 -0.969 -0.304 1.717 sum -13.744 -24.369 -0.200 27.979 Atomic orbital electron populations 1.23067 0.78361 1.04164 1.01397 1.86073 1.21248 1.25836 1.89648 1.19719 0.93080 0.85694 1.04877 1.20627 0.91628 0.97918 0.97957 1.21054 1.00920 0.90310 1.09321 1.18071 0.89128 0.83860 0.94700 1.43078 1.04834 0.95136 1.83095 1.44537 1.07105 0.95356 1.81607 1.15815 0.83207 0.81766 0.78382 1.91024 1.61326 1.33559 1.58940 1.45583 1.04133 1.10305 1.79142 1.20994 0.94127 0.80986 0.97549 1.22401 1.00042 0.99897 0.95701 1.20881 0.88091 0.92330 0.96676 1.44089 1.03230 1.69660 1.14522 1.19177 0.92993 1.34468 0.91538 0.91672 1.25052 0.99517 0.98485 0.96602 1.70019 1.31453 1.45744 1.07529 0.86309 0.84422 0.78017 0.78090 1.21382 1.21581 1.20531 1.20738 1.00986 0.87105 0.86374 1.22558 0.94190 1.02896 0.99017 1.66882 1.09536 1.27646 1.18990 1.22507 1.00070 0.86063 0.99731 0.92586 0.88114 0.92597 0.83652 0.83791 0.72606 0.71624 0.78146 0.89772 0.92397 0.92593 0.96093 0.92524 0.93596 0.96018 0.88982 0.92701 0.92200 0.82370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.82 101.05 0.99 1.09 16 2 O -0.32 -2.36 10.51 -19.77 -0.21 -2.57 16 3 C 0.02 0.13 6.71 -39.11 -0.26 -0.14 16 4 C -0.05 -0.39 10.12 -39.18 -0.40 -0.79 16 5 C -0.19 -1.37 9.93 -39.24 -0.39 -1.76 16 6 C 0.38 3.58 7.60 -154.85 -1.18 2.40 16 7 N -0.53 -4.96 6.43 31.16 0.20 -4.76 16 8 N -0.53 -6.47 6.29 27.63 0.17 -6.29 16 9 C 0.71 10.77 8.64 -86.93 -0.75 10.02 16 10 O -0.57 -11.11 16.84 5.29 0.09 -11.02 16 11 N -0.74 -10.17 5.04 -58.64 -0.30 -10.47 16 12 C 0.17 2.86 2.42 -67.89 -0.16 2.70 16 13 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 14 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 15 N -0.59 -14.61 2.99 -172.32 -0.52 -15.13 16 16 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 17 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -25.82 11.19 55.49 0.62 -25.20 16 20 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.17 4.02 5.30 -3.72 -0.02 4.00 16 25 C -0.15 -2.60 5.55 -26.62 -0.15 -2.74 16 26 N -0.51 -5.28 9.37 -12.28 -0.12 -5.40 16 27 C 0.07 0.62 10.21 -17.39 -0.18 0.44 16 28 H 0.06 0.18 7.67 -51.93 -0.40 -0.22 16 29 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.18 7.68 -51.93 -0.40 -0.22 16 31 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.43 3.11 6.70 -182.60 -1.22 1.89 16 34 H 0.44 5.43 8.05 -182.59 -1.47 3.96 16 35 H 0.38 4.12 6.52 -40.82 -0.27 3.85 16 36 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 2.36 6.07 -51.93 -0.31 2.04 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 46 H 0.16 0.95 6.30 -52.49 -0.33 0.62 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -33.59 376.33 -10.87 -44.46 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -8.56 Total: 5.72 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -2.90 Total: 8.67 kcal Atomic # 7 Polarization: -67.32 SS G_CDS: 0.07 Total: -67.25 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.12 Total: -13.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.59 -10.87 -44.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780988391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.052 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds