Wall clock time and date at job start Tue Mar 31 2020 18:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36009 * 116.99831 * 2 1 4 4 C 1.39265 * 120.39214 * 180.02562 * 3 2 1 5 5 C 1.38298 * 118.46493 * 180.02562 * 4 3 2 6 6 C 1.39091 * 119.14962 * 359.97438 * 5 4 3 7 7 N 1.39257 * 119.63964 * 179.97438 * 6 5 4 8 8 N 1.40103 * 119.99650 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99924 * 180.02562 * 8 7 6 10 10 O 1.21591 * 119.99718 * 180.02562 * 9 8 7 11 11 N 1.34771 * 120.00264 * 0.02562 * 9 8 7 12 12 C 1.46504 * 120.00229 * 180.02562 * 11 9 8 13 13 C 1.53037 * 109.45634 * 275.02443 * 12 11 9 14 14 C 1.53196 * 109.31124 * 178.60026 * 13 12 11 15 15 N 1.46925 * 108.76306 * 54.65433 * 14 13 12 16 16 C 1.36943 * 120.62961 * 126.40575 * 15 14 13 17 17 H 1.08001 * 120.00088 * 331.82648 * 16 15 14 18 18 C 1.38810 * 119.99703 * 151.82107 * 16 15 14 19 19 N 1.31614 * 120.00573 * 343.07829 * 18 16 15 20 20 Si 1.86807 * 119.99686 * 163.07590 * 18 16 15 21 21 H 1.48490 * 109.47140 * 90.00194 * 20 18 16 22 22 H 1.48503 * 109.46914 * 210.00459 * 20 18 16 23 23 H 1.48497 * 109.46888 * 330.00222 * 20 18 16 24 24 C 1.46923 * 118.74026 * 306.38474 * 15 14 13 25 25 C 1.53037 * 109.46156 * 154.96914 * 12 11 9 26 26 N 1.32326 * 120.70940 * 359.97438 * 6 5 4 27 27 C 1.31998 * 121.67790 * 0.04014 * 26 6 5 28 28 H 1.09001 * 109.47640 * 59.99748 * 1 2 3 29 29 H 1.09001 * 109.46867 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46784 * 299.99594 * 1 2 3 31 31 H 1.08008 * 120.76470 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.42543 * 179.72180 * 5 4 3 33 33 H 0.96997 * 120.00651 * 0.02562 * 7 6 5 34 34 H 0.97004 * 119.99987 * 0.02562 * 8 7 6 35 35 H 0.97000 * 120.00026 * 359.97438 * 11 9 8 36 36 H 1.08998 * 109.45918 * 34.99317 * 12 11 9 37 37 H 1.08993 * 109.50136 * 298.56121 * 13 12 11 38 38 H 1.08997 * 109.49987 * 58.66395 * 13 12 11 39 39 H 1.09000 * 109.60026 * 294.86694 * 14 13 12 40 40 H 1.08997 * 109.70369 * 174.50818 * 14 13 12 41 41 H 0.96996 * 120.00235 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58849 * 293.81651 * 24 15 14 43 43 H 1.09007 * 109.70167 * 173.46712 * 24 15 14 44 44 H 1.08999 * 109.49997 * 301.34255 * 25 12 11 45 45 H 1.09008 * 109.49622 * 61.43293 * 25 12 11 46 46 H 1.08001 * 119.60995 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4367 1.2943 -0.0005 5 6 4.0227 2.5470 0.0000 6 6 3.2095 3.6754 0.0006 7 7 3.7888 4.9418 0.0017 8 7 2.9767 6.0835 0.0017 9 6 3.5373 7.3091 0.0022 10 8 2.8325 8.2999 0.0027 11 7 4.8790 7.4365 0.0023 12 6 5.4883 8.7688 0.0034 13 6 5.5853 9.2862 -1.4335 14 6 6.1907 10.6935 -1.4255 15 7 7.4740 10.6518 -0.7114 16 6 8.6151 11.1295 -1.2988 17 1 8.7157 11.1152 -2.3740 18 6 9.6425 11.6322 -0.5122 19 7 9.4111 11.9618 0.7408 20 14 11.3535 11.8409 -1.2322 21 1 11.4790 13.1963 -1.8255 22 1 12.3659 11.6747 -0.1585 23 1 11.5758 10.8173 -2.2848 24 6 7.5098 10.0884 0.6450 25 6 6.8894 8.6881 0.6138 26 7 1.8914 3.5585 0.0000 27 6 1.3002 2.3783 -0.0002 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0431 0.4006 -0.0005 32 1 5.0980 2.6478 0.0042 33 1 4.7544 5.0335 0.0017 34 1 2.0110 5.9918 0.0013 35 1 5.4412 6.6460 0.0023 36 1 4.8738 9.4486 0.5935 37 1 6.2202 8.6203 -2.0180 38 1 4.5897 9.3212 -1.8756 39 1 5.5127 11.3802 -0.9187 40 1 6.3530 11.0296 -2.4496 41 1 10.1291 12.3127 1.2905 42 1 6.9395 10.7258 1.3207 43 1 8.5422 10.0231 0.9887 44 1 6.8220 8.2972 1.6290 45 1 7.5119 8.0278 0.0098 46 1 0.2217 2.3217 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780988391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:06 Heat of formation + Delta-G solvation = 20.167024 kcal Electronic energy + Delta-G solvation = -28173.976493 eV Core-core repulsion = 24100.690018 eV Total energy + Delta-G solvation = -4073.286475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.75054 -41.22114 -39.39275 -38.97688 -37.08348 -36.02880 -33.89117 -33.44742 -32.69916 -31.71052 -30.97100 -29.17514 -28.13651 -26.92068 -24.59839 -24.00886 -23.81911 -23.55165 -21.87419 -21.20991 -19.93275 -19.59986 -18.90303 -18.66653 -17.74002 -17.17971 -16.82277 -16.74644 -16.53715 -16.27588 -15.85560 -15.42664 -15.36694 -15.30613 -15.11884 -14.88958 -14.74929 -14.36741 -14.30058 -14.05872 -13.69229 -13.21913 -13.03359 -13.00155 -12.68936 -12.60684 -12.51055 -12.25927 -12.11314 -12.00822 -11.86155 -11.65697 -11.52042 -11.27752 -10.74032 -10.54676 -10.50629 -10.26733 -9.88962 -8.69059 -8.24809 -7.86456 -5.31828 0.18549 0.41094 0.93699 1.49557 1.50831 1.60707 1.91108 1.99889 2.41414 2.53399 2.83847 3.20594 3.30324 3.67422 3.75046 3.86048 3.92839 3.96023 4.05822 4.32845 4.34710 4.44548 4.46237 4.48990 4.65303 4.66269 4.76976 4.80798 4.85324 4.90191 4.98552 5.05678 5.07985 5.16711 5.24341 5.31484 5.47545 5.49311 5.54737 5.66394 5.72062 5.95919 6.29747 6.37199 6.40583 6.85820 7.16198 7.24904 7.44233 7.85633 8.38550 9.20674 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.001935 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.651318 B =14470.008090 C =15119.990051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.015 3.985 4 C -0.062 4.062 5 C -0.178 4.178 6 C 0.357 3.643 7 N -0.522 5.522 8 N -0.521 5.521 9 C 0.710 3.290 10 O -0.621 6.621 11 N -0.721 5.721 12 C 0.180 3.820 13 C -0.125 4.125 14 C 0.144 3.856 15 N -0.608 5.608 16 C -0.263 4.263 17 H 0.067 0.933 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.269 1.269 24 C 0.178 3.822 25 C -0.128 4.128 26 N -0.537 5.537 27 C 0.059 3.941 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.063 0.937 31 H 0.167 0.833 32 H 0.174 0.826 33 H 0.440 0.560 34 H 0.438 0.562 35 H 0.405 0.595 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.007 0.993 40 H 0.057 0.943 41 H 0.251 0.749 42 H -0.006 1.006 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.935 -27.932 -0.706 31.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C -0.035 4.035 4 C -0.088 4.088 5 C -0.203 4.203 6 C 0.122 3.878 7 N -0.261 5.261 8 N -0.274 5.274 9 C 0.409 3.591 10 O -0.498 6.498 11 N -0.377 5.377 12 C 0.074 3.926 13 C -0.165 4.165 14 C 0.018 3.982 15 N -0.331 5.331 16 C -0.393 4.393 17 H 0.085 0.915 18 C -0.245 4.245 19 N -0.581 5.581 20 Si 0.796 3.204 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.193 1.193 24 C 0.052 3.948 25 C -0.167 4.167 26 N -0.256 5.256 27 C -0.098 4.098 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.081 0.919 31 H 0.185 0.815 32 H 0.191 0.809 33 H 0.286 0.714 34 H 0.283 0.717 35 H 0.241 0.759 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.025 0.975 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.012 0.988 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.729 -26.399 -0.600 30.236 hybrid contribution 1.127 -0.178 -0.092 1.144 sum -13.602 -26.577 -0.692 29.863 Atomic orbital electron populations 1.23324 0.76718 1.05650 1.02108 1.86061 1.23051 1.25590 1.89456 1.19924 0.93695 0.85839 1.04011 1.20989 0.91640 0.98778 0.97430 1.21350 1.02221 0.89334 1.07405 1.18354 0.89401 0.84168 0.95905 1.43062 1.04865 0.94114 1.84043 1.44232 1.07372 0.95649 1.80112 1.15791 0.83102 0.81979 0.78267 1.90996 1.62366 1.35565 1.60917 1.45097 1.03959 1.09741 1.78911 1.20584 0.93475 0.82141 0.96356 1.22195 0.99900 0.97812 0.96585 1.20966 0.86820 0.94300 0.96124 1.44339 1.03750 1.70020 1.15021 1.19506 0.93939 1.34028 0.91852 0.91518 1.25804 1.02949 0.98685 0.97012 1.70177 1.32198 1.46949 1.08776 0.85274 0.79874 0.77864 0.77378 1.21509 1.21775 1.19338 1.20572 0.99385 0.89657 0.85219 1.22269 0.94079 0.99477 1.00901 1.66834 1.10367 1.28729 1.19683 1.22764 1.00979 0.85827 1.00239 0.91877 0.86328 0.91881 0.81545 0.80859 0.71400 0.71659 0.75857 0.92258 0.91336 0.92337 0.97505 0.92407 0.94026 0.98753 0.91690 0.90327 0.90736 0.80898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 113.37 1.11 1.22 16 2 O -0.33 -4.34 10.51 -93.65 -0.98 -5.32 16 3 C 0.01 0.21 6.71 22.57 0.15 0.36 16 4 C -0.06 -0.74 10.12 22.53 0.23 -0.51 16 5 C -0.18 -2.05 9.93 22.49 0.22 -1.83 16 6 C 0.36 6.05 7.60 132.99 1.01 7.06 16 7 N -0.52 -8.73 6.43 -55.34 -0.36 -9.08 16 8 N -0.52 -12.06 6.29 -184.75 -1.16 -13.22 16 9 C 0.71 20.81 8.64 179.06 1.55 22.35 16 10 O -0.62 -24.05 16.84 -4.00 -0.07 -24.12 16 11 N -0.72 -18.50 5.04 -457.70 -2.31 -20.81 16 12 C 0.18 5.97 2.42 45.02 0.11 6.08 16 13 C -0.12 -4.41 5.65 30.67 0.17 -4.23 16 14 C 0.14 6.22 6.52 86.36 0.56 6.78 16 15 N -0.61 -30.27 2.99 -699.10 -2.09 -32.36 16 16 C -0.26 -14.29 9.58 84.03 0.81 -13.48 16 17 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 18 C -0.05 -2.70 4.92 84.86 0.42 -2.28 16 19 N -0.94 -54.60 11.19 21.65 0.24 -54.36 16 20 Si 0.97 44.01 29.59 68.60 2.03 46.04 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 C 0.18 8.33 5.30 86.36 0.46 8.78 16 25 C -0.13 -4.34 5.55 30.67 0.17 -4.17 16 26 N -0.54 -10.45 9.37 -192.77 -1.81 -12.26 16 27 C 0.06 0.91 10.21 84.72 0.87 1.78 16 28 H 0.06 0.30 7.67 -2.39 -0.02 0.29 16 29 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.30 7.68 -2.39 -0.02 0.29 16 31 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.44 5.06 6.70 -213.32 -1.43 3.63 16 34 H 0.44 10.59 8.05 -213.31 -1.72 8.87 16 35 H 0.40 7.39 6.52 -92.71 -0.60 6.78 16 36 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.06 3.39 6.07 -2.38 -0.01 3.38 16 44 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 46 H 0.17 1.91 6.30 -2.91 -0.02 1.89 16 Total: -1.00 -74.02 376.33 -1.38 -75.40 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -2.71 Total: 22.17 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 7.83 Total: 27.91 kcal Atomic # 7 Polarization: -134.60 SS G_CDS: -7.48 Total: -142.08 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -1.05 Total: -29.44 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -74.02 -1.38 -75.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780988391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.565 kcal (2) G-P(sol) polarization free energy of solvation -74.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds