Wall clock time and date at job start Tue Mar 31 2020 18:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 120.00001 * 2 1 4 4 O 1.21274 * 120.00294 * 354.99357 * 3 2 1 5 5 C 1.50701 * 119.99795 * 174.99522 * 3 2 1 6 6 N 1.46498 * 110.02255 * 34.58154 * 5 3 2 7 7 C 1.34785 * 119.99599 * 63.67007 * 6 5 3 8 8 O 1.21592 * 119.99928 * 354.97211 * 7 6 5 9 9 N 1.34773 * 119.99754 * 174.96930 * 7 6 5 10 10 C 1.40199 * 119.99891 * 180.02562 * 9 7 6 11 11 C 1.40399 * 125.97259 * 0.02562 * 10 9 7 12 12 C 1.35236 * 107.86676 * 179.73797 * 11 10 9 13 13 N 1.34962 * 107.86080 * 0.36429 * 12 11 10 14 14 C 1.46502 * 125.97688 * 179.89516 * 13 12 11 15 15 C 1.50703 * 109.46904 * 124.71561 * 14 13 12 16 16 H 1.07999 * 119.99760 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99837 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00238 * 359.72186 * 17 15 14 19 19 Si 1.86801 * 119.99722 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47060 * 179.72306 * 19 17 15 21 21 H 1.48500 * 109.47288 * 299.72474 * 19 17 15 22 22 H 1.48503 * 109.47107 * 59.72786 * 19 17 15 23 23 N 1.31207 * 125.97283 * 179.97438 * 10 9 7 24 24 C 1.53875 * 110.03216 * 155.98010 * 5 3 2 25 25 C 1.54372 * 106.54659 * 119.34646 * 24 5 3 26 26 C 1.54883 * 104.21781 * 23.56958 * 25 24 5 27 27 C 1.54274 * 110.03182 * 273.19165 * 5 3 2 28 28 H 1.09001 * 109.46894 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47066 * 299.99686 * 1 2 3 30 30 H 1.09000 * 109.47133 * 59.99689 * 1 2 3 31 31 H 0.97008 * 119.99866 * 180.02562 * 2 1 3 32 32 H 0.96994 * 120.00814 * 243.67672 * 6 5 3 33 33 H 0.97000 * 120.00309 * 0.02562 * 9 7 6 34 34 H 1.08002 * 126.06143 * 359.96461 * 11 10 9 35 35 H 1.08004 * 126.07142 * 180.25919 * 12 11 10 36 36 H 1.08997 * 109.47071 * 4.71984 * 14 13 12 37 37 H 1.08999 * 109.47271 * 244.71624 * 14 13 12 38 38 H 0.97001 * 119.99682 * 0.27998 * 18 17 15 39 39 H 1.09001 * 110.02653 * 238.61501 * 24 5 3 40 40 H 1.08998 * 110.03101 * 0.03946 * 24 5 3 41 41 H 1.08997 * 110.45797 * 264.89448 * 25 24 5 42 42 H 1.09002 * 110.60299 * 142.31906 * 25 24 5 43 43 H 1.08997 * 110.76224 * 203.75827 * 26 25 24 44 44 H 1.09005 * 110.75492 * 80.39251 * 26 25 24 45 45 H 1.09003 * 110.48006 * 335.74026 * 27 5 3 46 46 H 1.09006 * 110.48645 * 98.37531 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2155 -0.0917 5 6 3.6416 1.1696 0.1139 6 7 4.1988 0.0042 -0.5771 7 6 4.0435 -0.1272 -1.9095 8 8 3.3641 0.6722 -2.5241 9 7 4.6414 -1.1446 -2.5605 10 6 4.4803 -1.2810 -3.9465 11 6 3.7286 -0.4343 -4.7766 12 6 3.8287 -0.8988 -6.0428 13 7 4.6060 -2.0018 -6.0188 14 6 4.9721 -2.8220 -7.1761 15 6 6.4729 -2.9285 -7.2618 16 1 7.0920 -2.4349 -6.5273 17 6 7.0555 -3.6560 -8.2778 18 7 6.3015 -4.2616 -9.1690 19 14 8.9158 -3.7885 -8.3835 20 1 9.2868 -4.6248 -9.5532 21 1 9.5007 -2.4324 -8.5392 22 1 9.4389 -4.4137 -7.1422 23 7 5.0065 -2.2216 -4.6947 24 6 4.2139 2.4640 -0.4901 25 6 4.9606 3.1886 0.6502 26 6 5.3131 2.0605 1.6512 27 6 4.0590 1.1530 1.5989 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 4.6795 -0.6729 -0.0758 33 1 5.1832 -1.7825 -2.0701 34 1 3.1724 0.4359 -4.4606 35 1 3.3670 -0.4651 -6.9176 36 1 4.5882 -2.3594 -8.0853 37 1 4.5429 -3.8179 -7.0661 38 1 5.3354 -4.1930 -9.1139 39 1 4.9061 2.2250 -1.2974 40 1 3.4046 3.0907 -0.8650 41 1 4.3122 3.9275 1.1210 42 1 5.8676 3.6624 0.2745 43 1 5.4563 2.4641 2.6535 44 1 6.1982 1.5155 1.3230 45 1 3.2650 1.5631 2.2229 46 1 4.3080 0.1396 1.9139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782571957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:29 Heat of formation + Delta-G solvation = 18.489533 kcal Electronic energy + Delta-G solvation = -29292.127507 eV Core-core repulsion = 25218.768290 eV Total energy + Delta-G solvation = -4073.359217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36166 -40.49996 -39.14864 -37.58035 -34.95222 -34.79631 -33.94161 -33.48394 -30.87407 -29.41190 -29.22788 -28.72866 -26.69444 -26.15933 -23.30754 -22.24085 -22.02467 -21.27278 -20.70288 -19.89958 -19.75220 -18.26702 -17.88970 -17.19282 -16.75588 -16.37268 -15.68161 -15.50044 -15.32944 -15.09621 -14.85769 -14.52872 -14.16232 -14.01648 -13.78992 -13.61014 -13.22150 -12.96176 -12.59055 -12.47029 -12.43700 -12.28098 -11.92292 -11.82908 -11.67630 -11.52423 -11.32741 -11.17618 -10.84688 -10.80628 -10.57867 -10.39692 -10.17539 -10.15386 -9.76339 -9.34223 -9.23444 -9.00148 -8.59435 -8.21177 -7.50915 -6.59300 -4.33404 2.08873 2.48668 2.54489 2.93889 3.06378 3.36581 3.38020 3.43243 3.57650 3.71845 4.07039 4.15401 4.17188 4.39992 4.40668 4.76228 5.00753 5.05383 5.08293 5.13608 5.14359 5.26034 5.28693 5.32107 5.40114 5.55581 5.58426 5.60376 5.69253 5.80066 5.97225 6.08226 6.10935 6.19611 6.24984 6.38864 6.44071 6.61997 6.74802 6.88211 7.26100 7.38085 7.60187 7.81531 7.83383 8.03704 8.33087 8.45411 8.53757 8.61299 9.34850 10.78216 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.002537 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.056027 B =11035.505917 C =11894.321328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.728 5.728 3 C 0.525 3.475 4 O -0.531 6.531 5 C 0.180 3.820 6 N -0.740 5.740 7 C 0.709 3.291 8 O -0.550 6.550 9 N -0.641 5.641 10 C 0.276 3.724 11 C -0.282 4.282 12 C 0.050 3.950 13 N -0.318 5.318 14 C 0.250 3.750 15 C -0.608 4.608 16 H 0.063 0.937 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.304 5.304 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.117 4.117 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.399 0.601 32 H 0.399 0.601 33 H 0.407 0.593 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.046 0.954 37 H 0.034 0.966 38 H 0.267 0.733 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 8.767 24.008 26.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.379 5.379 3 C 0.310 3.690 4 O -0.406 6.406 5 C 0.090 3.910 6 N -0.399 5.399 7 C 0.408 3.592 8 O -0.423 6.423 9 N -0.291 5.291 10 C 0.022 3.978 11 C -0.314 4.314 12 C -0.099 4.099 13 N -0.100 5.100 14 C 0.132 3.868 15 C -0.646 4.646 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.540 5.540 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.212 1.212 23 N -0.135 5.135 24 C -0.155 4.155 25 C -0.162 4.162 26 C -0.160 4.160 27 C -0.156 4.156 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.233 0.767 32 H 0.235 0.765 33 H 0.242 0.758 34 H 0.179 0.821 35 H 0.184 0.816 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.194 8.512 22.357 24.480 hybrid contribution -1.081 0.127 1.232 1.644 sum -6.275 8.639 23.589 25.893 Atomic orbital electron populations 1.21527 0.79634 1.02143 1.02259 1.45651 1.07647 1.08775 1.75861 1.20571 0.89633 0.83721 0.75096 1.90681 1.69621 1.31539 1.48713 1.21039 0.89379 0.87124 0.93505 1.45349 1.62133 1.26252 1.06198 1.15661 0.80466 0.81543 0.81482 1.90942 1.42264 1.43652 1.65485 1.41362 1.52867 1.30042 1.04859 1.18761 0.99370 0.96538 0.83124 1.21520 1.12240 1.06785 0.90826 1.22557 0.97399 0.90747 0.99229 1.48759 1.34990 1.20837 1.05424 1.19748 0.98422 0.89710 0.78953 1.22105 0.89913 1.36973 1.15615 0.91849 1.25924 1.07719 0.92519 0.92031 1.70853 1.06756 1.41046 1.35373 0.83421 0.73219 0.76611 0.76391 1.20522 1.21228 1.21150 1.77335 1.24429 1.22728 0.88996 1.22463 1.01046 0.93879 0.98096 1.22417 1.00252 0.97685 0.95865 1.22520 0.96893 0.96609 0.99960 1.22609 0.99424 1.01542 0.91989 0.90822 0.92382 0.92032 0.76717 0.76518 0.75842 0.82055 0.81578 0.93644 0.94828 0.92270 0.90352 0.88944 0.91144 0.91096 0.90798 0.90870 0.89521 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.71 59.85 0.64 1.42 16 2 N -0.73 -7.23 5.60 -67.08 -0.38 -7.60 16 3 C 0.53 6.43 5.36 -10.99 -0.06 6.37 16 4 O -0.53 -8.44 15.54 5.56 0.09 -8.35 16 5 C 0.18 1.71 0.88 -131.85 -0.12 1.60 16 6 N -0.74 -6.45 4.30 -52.44 -0.23 -6.67 16 7 C 0.71 9.51 7.54 -86.91 -0.66 8.86 16 8 O -0.55 -9.48 11.65 5.28 0.06 -9.42 16 9 N -0.64 -9.19 5.46 -15.50 -0.08 -9.27 16 10 C 0.28 5.40 8.11 -154.36 -1.25 4.15 16 11 C -0.28 -5.59 9.61 -39.84 -0.38 -5.97 16 12 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 13 N -0.32 -7.39 3.67 -62.56 -0.23 -7.62 16 14 C 0.25 6.30 5.57 -5.19 -0.03 6.27 16 15 C -0.61 -17.03 9.24 -34.44 -0.32 -17.35 16 16 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 17 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 18 N -0.90 -26.27 13.65 55.43 0.76 -25.52 16 19 Si 1.08 24.78 29.90 -169.99 -5.08 19.69 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 23 N -0.30 -6.89 12.42 31.44 0.39 -6.50 16 24 C -0.12 -1.30 5.15 -25.56 -0.13 -1.44 16 25 C -0.12 -1.01 6.83 -25.02 -0.17 -1.18 16 26 C -0.12 -0.72 6.91 -24.75 -0.17 -0.89 16 27 C -0.12 -0.72 6.01 -25.07 -0.15 -0.87 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.40 3.19 8.13 -40.82 -0.33 2.85 16 32 H 0.40 2.06 8.25 -40.82 -0.34 1.72 16 33 H 0.41 4.55 8.84 -40.82 -0.36 4.19 16 34 H 0.16 3.19 5.91 -52.49 -0.31 2.87 16 35 H 0.17 2.75 8.06 -52.48 -0.42 2.33 16 36 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 37 H 0.03 0.88 8.00 -51.93 -0.42 0.47 16 38 H 0.27 7.58 7.22 -40.82 -0.29 7.29 16 39 H 0.08 1.00 7.09 -51.93 -0.37 0.63 16 40 H 0.09 1.30 6.69 -51.93 -0.35 0.95 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.56 7.85 -51.93 -0.41 0.15 16 46 H 0.08 0.31 7.71 -51.93 -0.40 -0.09 16 LS Contribution 378.81 15.07 5.71 5.71 Total: -1.00 -36.43 378.81 -8.66 -45.09 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.57 Total: 8.16 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -3.09 Total: 2.31 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.23 Total: -63.19 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.15 Total: -17.77 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.43 -8.66 -45.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782571957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.579 kcal (2) G-P(sol) polarization free energy of solvation -36.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds