Wall clock time and date at job start Tue Mar 31 2020 18:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 119.99883 * 2 1 4 4 O 1.21274 * 120.00009 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.99781 * 359.97438 * 3 2 1 6 6 C 1.50699 * 109.46799 * 179.97438 * 5 3 2 7 7 C 1.38231 * 119.59071 * 124.72937 * 6 5 3 8 8 C 1.38591 * 119.19175 * 179.77478 * 7 6 5 9 9 C 1.38881 * 118.39935 * 0.48607 * 8 7 6 10 10 F 1.35095 * 120.44192 * 179.72984 * 9 8 7 11 11 C 1.38427 * 119.10978 * 359.75725 * 9 8 7 12 12 N 1.31848 * 119.59312 * 304.99894 * 6 5 3 13 13 C 1.46499 * 120.00266 * 179.97438 * 2 1 3 14 14 H 1.09004 * 110.21204 * 181.93715 * 13 2 1 15 15 C 1.50133 * 110.24511 * 304.02022 * 13 2 1 16 16 C 1.54842 * 110.81068 * 216.65438 * 15 13 2 17 17 C 1.54903 * 110.14238 * 321.13477 * 16 15 13 18 18 N 1.43435 * 116.07957 * 318.64071 * 17 16 15 19 19 C 1.36934 * 120.53782 * 271.54457 * 18 17 16 20 20 H 1.08006 * 120.00421 * 336.74209 * 19 18 17 21 21 C 1.38816 * 120.00268 * 156.73950 * 19 18 17 22 22 N 1.31619 * 119.99306 * 340.42115 * 21 19 18 23 23 Si 1.86797 * 120.00254 * 160.41513 * 21 19 18 24 24 H 1.48494 * 109.46993 * 60.00458 * 23 21 19 25 25 H 1.48504 * 109.46780 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47165 * 300.00135 * 23 21 19 27 27 C 1.50169 * 118.92676 * 91.56914 * 18 17 16 28 28 C 1.46236 * 107.52803 * 289.59137 * 27 18 17 29 29 H 1.08999 * 109.47198 * 269.99923 * 1 2 3 30 30 H 1.08997 * 109.46866 * 150.00200 * 1 2 3 31 31 H 1.09003 * 109.46910 * 29.99923 * 1 2 3 32 32 H 1.08998 * 109.47290 * 300.00117 * 5 3 2 33 33 H 1.09003 * 109.46854 * 60.00672 * 5 3 2 34 34 H 1.08009 * 120.40367 * 359.97438 * 7 6 5 35 35 H 1.08000 * 120.80026 * 180.21533 * 8 7 6 36 36 H 1.07997 * 119.63240 * 180.02562 * 11 9 8 37 37 H 1.08993 * 109.21094 * 336.99884 * 15 13 2 38 38 H 1.09002 * 109.20878 * 96.31276 * 15 13 2 39 39 H 1.09004 * 109.35848 * 200.93140 * 16 15 13 40 40 H 1.08994 * 109.36162 * 81.34061 * 16 15 13 41 41 H 1.09003 * 108.15655 * 196.92781 * 17 16 15 42 42 H 1.08992 * 108.16321 * 80.36009 * 17 16 15 43 43 H 0.97008 * 119.99511 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.84951 * 170.07918 * 27 18 17 45 45 H 1.09001 * 109.84350 * 49.09385 * 27 18 17 46 46 H 1.08999 * 108.52510 * 297.16064 * 28 27 18 47 47 H 1.09000 * 108.39621 * 179.56032 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3646 3.6178 0.0002 7 6 2.2884 4.5816 -0.9878 8 6 3.1902 5.6339 -0.9764 9 6 4.1477 5.6725 0.0288 10 9 5.0504 6.6765 0.0761 11 6 4.1650 4.6681 0.9812 12 7 3.2868 3.6853 0.9401 13 6 2.1976 -1.2687 0.0006 14 1 3.2712 -1.0836 0.0351 15 6 1.7749 -2.1121 1.1684 16 6 2.9796 -2.8941 1.7470 17 6 3.8920 -3.3938 0.5992 18 7 3.2224 -3.9138 -0.5577 19 6 2.8805 -5.2379 -0.6273 20 1 3.4115 -5.9649 -0.0305 21 6 1.8515 -5.6461 -1.4648 22 7 0.9629 -4.7727 -1.8891 23 14 1.7280 -7.4345 -1.9897 24 1 1.5746 -8.2935 -0.7881 25 1 0.5505 -7.6096 -2.8775 26 1 2.9609 -7.8220 -2.7211 27 6 2.9028 -2.9827 -1.6917 28 6 1.8419 -2.0842 -1.2383 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5138 32 1 0.7590 2.5298 -0.8908 33 1 0.7584 2.5302 0.8892 34 1 1.5333 4.5171 -1.7573 35 1 3.1521 6.4031 -1.7336 36 1 4.9057 4.6900 1.7669 37 1 1.3593 -1.4687 1.9438 38 1 1.0116 -2.8189 0.8428 39 1 2.6155 -3.7487 2.3172 40 1 3.5521 -2.2406 2.4051 41 1 4.5403 -4.1749 0.9963 42 1 4.5239 -2.5643 0.2819 43 1 0.2439 -5.0578 -2.4747 44 1 2.5604 -3.5541 -2.5544 45 1 3.7884 -2.4053 -1.9572 46 1 0.9550 -2.6786 -1.0187 47 1 1.6040 -1.3960 -2.0493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948554040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:55 Heat of formation + Delta-G solvation = -6.802170 kcal Electronic energy + Delta-G solvation = -29552.780768 eV Core-core repulsion = 25458.404859 eV Total energy + Delta-G solvation = -4094.375909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.20940 -40.63067 -39.56425 -37.58778 -35.13959 -33.20272 -32.72503 -32.53073 -31.15772 -30.50770 -28.18821 -26.74927 -25.94490 -24.27928 -23.92973 -23.04833 -22.59736 -20.04094 -19.42446 -18.43967 -17.88437 -17.61249 -16.88161 -16.65378 -16.33263 -15.98699 -15.48053 -15.37568 -14.86377 -14.33869 -14.15869 -14.03319 -13.77233 -13.69231 -13.40113 -13.21644 -13.10472 -12.91543 -12.70772 -12.45430 -12.10555 -12.00285 -11.85994 -11.68556 -11.30533 -11.18968 -10.73701 -10.72176 -10.26674 -10.17966 -10.11586 -9.93354 -9.78060 -9.75789 -9.43161 -9.41431 -9.26453 -9.01102 -8.48151 -8.12618 -6.70016 -5.78695 -3.16492 0.64151 0.87414 2.90779 3.17075 3.39298 3.44720 3.47664 3.51639 3.74050 4.04383 4.30867 4.47375 4.52179 4.57202 4.76643 5.05233 5.09760 5.27215 5.30607 5.36260 5.42308 5.49598 5.57255 5.58682 5.66277 5.70730 5.81805 5.86968 5.93030 6.23694 6.32992 6.34203 6.37061 6.57120 6.59410 6.66487 6.91462 6.94017 6.98947 7.10318 7.17503 7.28236 7.53508 7.68031 7.73805 7.80063 7.94692 8.43970 8.50214 9.20404 9.88414 10.42239 11.28953 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.024528 B = 0.002525 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.288201 B =11085.466373 C =11318.065678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.605 5.605 3 C 0.516 3.484 4 O -0.528 6.528 5 C -0.092 4.092 6 C 0.138 3.862 7 C -0.138 4.138 8 C -0.109 4.109 9 C 0.039 3.961 10 F -0.133 7.133 11 C 0.083 3.917 12 N -0.427 5.427 13 C 0.143 3.857 14 H 0.097 0.903 15 C -0.111 4.111 16 C -0.139 4.139 17 C 0.154 3.846 18 N -0.588 5.588 19 C -0.244 4.244 20 H 0.067 0.933 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.168 3.832 28 C -0.133 4.133 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.032 0.968 42 H 0.029 0.971 43 H 0.252 0.748 44 H 0.092 0.908 45 H 0.007 0.993 46 H 0.104 0.896 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.658 19.914 2.635 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.338 5.338 3 C 0.302 3.698 4 O -0.404 6.404 5 C -0.132 4.132 6 C 0.000 4.000 7 C -0.158 4.158 8 C -0.136 4.136 9 C 0.018 3.982 10 F -0.112 7.112 11 C -0.077 4.077 12 N -0.134 5.134 13 C 0.041 3.959 14 H 0.114 0.886 15 C -0.149 4.149 16 C -0.181 4.181 17 C 0.025 3.975 18 N -0.310 5.310 19 C -0.374 4.374 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.213 1.213 27 C 0.044 3.956 28 C -0.172 4.172 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.183 0.817 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.025 0.975 46 H 0.122 0.878 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.088 19.225 3.142 19.592 hybrid contribution -0.283 -0.043 -0.865 0.911 sum -2.371 19.182 2.277 19.462 Atomic orbital electron populations 1.21765 0.80202 1.03298 1.01529 1.48057 1.06732 1.06238 1.72754 1.20085 0.88061 0.84664 0.76999 1.90713 1.13654 1.86945 1.49047 1.20675 0.96816 0.90303 1.05440 1.20735 0.93891 0.94432 0.90980 1.21875 1.00098 0.94260 0.99564 1.21591 0.94334 0.99695 0.97975 1.18864 0.91295 0.89017 0.99045 1.91513 1.65205 1.58308 1.96152 1.22924 0.98074 0.88966 0.97706 1.67530 1.01784 1.20306 1.23790 1.20627 0.97045 0.80909 0.97339 0.88553 1.21726 0.99358 0.97680 0.96141 1.22811 0.97557 0.98424 0.99295 1.20426 0.93170 0.96053 0.87811 1.44237 1.68570 1.06110 1.12035 1.19192 1.11532 0.83106 1.23521 0.91571 1.24862 0.95327 0.97304 1.02194 1.69947 1.14112 1.33165 1.37643 0.86398 0.76887 0.85280 0.78376 1.21137 1.21806 1.21265 1.20101 0.92721 0.90293 0.92459 1.21340 1.04331 0.97116 0.94418 0.92908 0.90022 0.91776 0.87248 0.86994 0.83684 0.83546 0.81652 0.94286 0.90544 0.92882 0.93734 0.94927 0.95249 0.93826 0.88976 0.97537 0.87751 0.95294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 9.44 59.85 0.57 1.45 16 2 N -0.60 -9.41 2.64 -175.86 -0.46 -9.87 16 3 C 0.52 8.06 7.61 -10.98 -0.08 7.98 16 4 O -0.53 -10.51 14.69 5.56 0.08 -10.43 16 5 C -0.09 -0.97 4.65 -29.03 -0.14 -1.10 16 6 C 0.14 1.62 5.76 -82.59 -0.48 1.14 16 7 C -0.14 -1.24 9.71 -39.45 -0.38 -1.62 16 8 C -0.11 -0.97 10.16 -39.21 -0.40 -1.36 16 9 C 0.04 0.41 7.35 -39.27 -0.29 0.12 16 10 F -0.13 -1.39 17.28 2.25 0.04 -1.35 16 11 C 0.08 0.96 11.17 -17.47 -0.20 0.76 16 12 N -0.43 -5.86 9.22 -9.42 -0.09 -5.94 16 13 C 0.14 2.70 2.30 -69.60 -0.16 2.54 16 14 H 0.10 2.08 5.12 -51.93 -0.27 1.81 16 15 C -0.11 -2.11 4.82 -27.19 -0.13 -2.24 16 16 C -0.14 -2.72 6.41 -24.76 -0.16 -2.88 16 17 C 0.15 3.35 5.17 -4.66 -0.02 3.32 16 18 N -0.59 -14.41 2.60 -175.08 -0.46 -14.87 16 19 C -0.24 -6.49 9.63 -15.06 -0.14 -6.64 16 20 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 21 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 22 N -0.90 -24.07 9.43 55.49 0.52 -23.55 16 23 Si 0.90 21.20 29.60 -169.99 -5.03 16.17 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 27 C 0.17 3.95 5.24 -5.20 -0.03 3.92 16 28 C -0.13 -2.77 3.82 -30.19 -0.12 -2.89 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.07 7.16 -51.93 -0.37 0.70 16 31 H 0.06 0.53 6.44 -51.93 -0.33 0.20 16 32 H 0.11 0.80 7.13 -51.93 -0.37 0.43 16 33 H 0.11 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.15 0.84 7.95 -52.48 -0.42 0.42 16 35 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.04 0.68 7.83 -51.93 -0.41 0.27 16 38 H 0.08 1.65 6.83 -51.93 -0.35 1.29 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 42 H 0.03 0.63 6.89 -51.93 -0.36 0.27 16 43 H 0.25 6.60 8.31 -40.82 -0.34 6.27 16 44 H 0.09 2.38 6.05 -51.93 -0.31 2.07 16 45 H 0.01 0.15 8.12 -51.93 -0.42 -0.27 16 46 H 0.10 2.43 5.08 -51.93 -0.26 2.17 16 47 H 0.03 0.58 8.02 -51.93 -0.42 0.16 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -31.49 370.39 -8.85 -40.34 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.79 Total: 1.48 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -2.24 Total: 2.44 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.48 Total: -54.23 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.49 -8.85 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948554040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.535 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds