Wall clock time and date at job start Tue Mar 31 2020 18:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34770 * 120.00360 * 2 1 4 4 O 1.21276 * 120.00104 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.00038 * 0.02562 * 3 2 1 6 6 C 1.50699 * 109.47336 * 179.97438 * 5 3 2 7 7 C 1.38233 * 119.59196 * 124.72407 * 6 5 3 8 8 C 1.38592 * 119.18883 * 179.77265 * 7 6 5 9 9 C 1.38877 * 118.39723 * 0.49178 * 8 7 6 10 10 F 1.35104 * 120.43990 * 179.72968 * 9 8 7 11 11 C 1.38426 * 119.11609 * 359.75058 * 9 8 7 12 12 N 1.31851 * 119.58399 * 304.99718 * 6 5 3 13 13 C 1.46500 * 119.99818 * 180.02562 * 2 1 3 14 14 H 1.09001 * 108.44939 * 182.30845 * 13 2 1 15 15 C 1.52573 * 108.51541 * 64.75893 * 13 2 1 16 16 C 1.50819 * 109.35874 * 153.73100 * 15 13 2 17 17 C 1.53957 * 110.09602 * 91.90076 * 16 15 13 18 18 N 1.47600 * 112.14045 * 319.41117 * 17 16 15 19 19 C 1.36945 * 118.64002 * 137.86834 * 18 17 16 20 20 H 1.08001 * 119.99651 * 206.50674 * 19 18 17 21 21 C 1.38812 * 120.00105 * 26.50648 * 19 18 17 22 22 N 1.31626 * 119.99668 * 15.67373 * 21 19 18 23 23 Si 1.86797 * 119.99909 * 195.67544 * 21 19 18 24 24 H 1.48494 * 109.47224 * 60.00148 * 23 21 19 25 25 H 1.48506 * 109.46837 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46985 * 299.99611 * 23 21 19 27 27 C 1.44571 * 122.71615 * 317.89102 * 18 17 16 28 28 C 1.47098 * 108.51333 * 299.99797 * 13 2 1 29 29 H 1.09010 * 109.46393 * 269.99830 * 1 2 3 30 30 H 1.08998 * 109.47085 * 29.99329 * 1 2 3 31 31 H 1.08993 * 109.47416 * 149.99901 * 1 2 3 32 32 H 1.08999 * 109.46651 * 299.99601 * 5 3 2 33 33 H 1.08994 * 109.47038 * 59.99353 * 5 3 2 34 34 H 1.08003 * 120.40255 * 359.97438 * 7 6 5 35 35 H 1.07994 * 120.79854 * 180.21513 * 8 7 6 36 36 H 1.07993 * 119.63529 * 179.97438 * 11 9 8 37 37 H 1.08994 * 109.49259 * 273.70571 * 15 13 2 38 38 H 1.09007 * 109.48634 * 33.75048 * 15 13 2 39 39 H 1.08999 * 109.38810 * 331.69934 * 16 15 13 40 40 H 1.08999 * 109.34597 * 212.08119 * 16 15 13 41 41 H 1.09003 * 108.94528 * 198.72189 * 17 16 15 42 42 H 1.08999 * 108.93990 * 80.09733 * 17 16 15 43 43 H 0.96996 * 119.99260 * 179.97438 * 22 21 19 44 44 H 1.09009 * 109.45037 * 210.74786 * 27 18 17 45 45 H 1.09005 * 109.44945 * 330.69157 * 27 18 17 46 46 H 1.08998 * 109.32686 * 63.79111 * 28 13 2 47 47 H 1.09001 * 109.18187 * 304.22497 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1670 -0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3648 3.6177 0.0011 7 6 2.2880 4.5819 -0.9864 8 6 3.1899 5.6342 -0.9752 9 6 4.1481 5.6722 0.0294 10 9 5.0509 6.6762 0.0765 11 6 4.1660 4.6675 0.9814 12 7 3.2877 3.6847 0.9404 13 6 2.1975 -1.2687 -0.0006 14 1 3.2647 -1.0510 0.0412 15 6 1.9054 -1.9962 -1.3095 16 6 3.0576 -2.9113 -1.6408 17 6 2.8023 -4.3145 -1.0611 18 7 2.2085 -4.2590 0.2891 19 6 1.1927 -5.1248 0.5955 20 1 0.4684 -4.8614 1.3521 21 6 1.0939 -6.3410 -0.0665 22 7 2.1189 -6.8028 -0.7509 23 14 -0.4938 -7.3219 0.0141 24 1 -1.6039 -6.5142 -0.5519 25 1 -0.3423 -8.5740 -0.7699 26 1 -0.7969 -7.6577 1.4285 27 6 2.6545 -3.3281 1.3012 28 6 1.8270 -2.0225 1.2071 29 1 -0.3632 0.0000 1.0278 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 0.7586 2.5302 -0.8892 33 1 0.7592 2.5298 0.8907 34 1 1.5324 4.5178 -1.7554 35 1 3.1513 6.4036 -1.7320 36 1 4.9077 4.6885 1.7660 37 1 0.9934 -2.5835 -1.2036 38 1 1.7778 -1.2674 -2.1100 39 1 3.9756 -2.5059 -1.2151 40 1 3.1635 -2.9812 -2.7233 41 1 3.7482 -4.8538 -1.0099 42 1 2.1251 -4.8532 -1.7238 43 1 2.0499 -7.6528 -1.2131 44 1 2.5205 -3.7725 2.2875 45 1 3.7093 -3.1009 1.1459 46 1 0.7662 -2.2697 1.1668 47 1 2.0212 -1.4081 2.0863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948554043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:58 Heat of formation + Delta-G solvation = -14.142539 kcal Electronic energy + Delta-G solvation = -29222.865191 eV Core-core repulsion = 25128.170980 eV Total energy + Delta-G solvation = -4094.694211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.26280 -40.73195 -39.72729 -37.62779 -35.29714 -33.35522 -32.79073 -32.55337 -31.62694 -30.36073 -28.16933 -26.82655 -25.90907 -24.34056 -24.10929 -23.34230 -22.55426 -20.05383 -19.23100 -18.93952 -17.94554 -17.68719 -17.01730 -16.67899 -16.42523 -16.05529 -15.65781 -15.40793 -15.07404 -14.41397 -14.24092 -14.13947 -13.84700 -13.61583 -13.45687 -13.33357 -13.08850 -13.01309 -12.82241 -12.47113 -12.42167 -12.18040 -12.06489 -11.87993 -11.33511 -11.20472 -10.81954 -10.59990 -10.43926 -10.24998 -10.16881 -10.13409 -9.83451 -9.79687 -9.72988 -9.58298 -9.50829 -9.08242 -8.42429 -8.35566 -6.64419 -5.76281 -3.20041 0.57518 0.80838 2.78296 3.05346 3.37346 3.42155 3.43732 3.43968 3.67530 3.97194 4.23507 4.41241 4.49373 4.50604 4.65365 4.97528 5.00271 5.17247 5.21134 5.27122 5.36939 5.43212 5.44369 5.51024 5.54212 5.60604 5.68997 5.75058 5.82998 6.05779 6.07141 6.25294 6.27989 6.37323 6.50987 6.58084 6.69376 6.80329 6.85063 6.88406 6.97991 7.02714 7.46953 7.58606 7.63376 7.73864 7.83911 8.35905 8.49017 9.26088 9.93175 10.38786 11.31023 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.029158 B = 0.002327 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.059774 B =12028.969433 C =12284.910810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.613 5.613 3 C 0.516 3.484 4 O -0.528 6.528 5 C -0.092 4.092 6 C 0.137 3.863 7 C -0.138 4.138 8 C -0.109 4.109 9 C 0.040 3.960 10 F -0.133 7.133 11 C 0.083 3.917 12 N -0.427 5.427 13 C 0.156 3.844 14 H 0.087 0.913 15 C -0.108 4.108 16 C -0.141 4.141 17 C 0.179 3.821 18 N -0.590 5.590 19 C -0.258 4.258 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.904 5.904 23 Si 0.900 3.100 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.162 3.838 28 C -0.152 4.152 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.024 0.976 42 H 0.074 0.926 43 H 0.253 0.747 44 H 0.049 0.951 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 23.755 -1.172 23.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.346 5.346 3 C 0.302 3.698 4 O -0.403 6.403 5 C -0.132 4.132 6 C -0.002 4.002 7 C -0.158 4.158 8 C -0.136 4.136 9 C 0.019 3.981 10 F -0.111 7.111 11 C -0.076 4.076 12 N -0.134 5.134 13 C 0.055 3.945 14 H 0.105 0.895 15 C -0.147 4.147 16 C -0.181 4.181 17 C 0.054 3.946 18 N -0.311 5.311 19 C -0.388 4.388 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.548 5.548 23 Si 0.730 3.270 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.033 3.967 28 C -0.193 4.193 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.184 0.816 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.243 22.948 -0.640 23.067 hybrid contribution -0.830 0.332 -0.699 1.135 sum -3.073 23.281 -1.340 23.521 Atomic orbital electron populations 1.21761 0.80129 1.03039 1.01825 1.48295 1.06901 1.06367 1.73085 1.20122 0.88063 0.84743 0.76869 1.90717 1.13665 1.86924 1.49034 1.20672 0.96822 0.90243 1.05485 1.20727 0.93932 0.94472 0.91035 1.21868 1.00090 0.94277 0.99581 1.21594 0.94310 0.99684 0.97994 1.18867 0.91264 0.89000 0.99006 1.91520 1.65176 1.58289 1.96141 1.22933 0.98060 0.88949 0.97698 1.67538 1.01791 1.20392 1.23705 1.20150 0.97200 0.81206 0.95978 0.89530 1.21255 1.00936 0.97594 0.94880 1.21976 0.97065 0.99191 0.99836 1.21015 0.97826 0.90018 0.85787 1.43664 1.40994 1.38664 1.07772 1.19149 1.03009 0.95732 1.20860 0.91809 1.25034 0.97139 0.96272 1.00998 1.70068 1.28198 1.19931 1.36599 0.86410 0.83637 0.79314 0.77613 1.21141 1.21725 1.20954 1.20569 0.94588 0.88527 0.92996 1.21842 1.02646 0.99130 0.95671 0.92611 0.91716 0.90336 0.87269 0.86907 0.83707 0.83525 0.81603 0.90502 0.93618 0.93457 0.92791 0.95768 0.90774 0.93655 0.93251 0.94807 0.91763 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 9.20 59.85 0.55 1.32 16 2 N -0.61 -8.50 2.59 -177.47 -0.46 -8.96 16 3 C 0.52 7.35 7.61 -10.99 -0.08 7.27 16 4 O -0.53 -9.79 14.63 5.56 0.08 -9.71 16 5 C -0.09 -0.87 4.65 -29.03 -0.14 -1.01 16 6 C 0.14 1.49 5.76 -82.59 -0.48 1.01 16 7 C -0.14 -1.13 9.71 -39.45 -0.38 -1.52 16 8 C -0.11 -0.89 10.16 -39.21 -0.40 -1.29 16 9 C 0.04 0.39 7.35 -39.28 -0.29 0.11 16 10 F -0.13 -1.32 17.28 2.25 0.04 -1.28 16 11 C 0.08 0.91 11.17 -17.46 -0.20 0.71 16 12 N -0.43 -5.55 9.22 -9.42 -0.09 -5.63 16 13 C 0.16 2.64 1.96 -70.98 -0.14 2.50 16 14 H 0.09 1.67 6.03 -51.93 -0.31 1.36 16 15 C -0.11 -1.89 4.34 -28.04 -0.12 -2.01 16 16 C -0.14 -2.71 5.71 -27.33 -0.16 -2.87 16 17 C 0.18 4.20 4.67 -2.94 -0.01 4.19 16 18 N -0.59 -14.21 2.27 -172.09 -0.39 -14.60 16 19 C -0.26 -6.80 9.44 -15.06 -0.14 -6.94 16 20 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 21 C 0.00 0.11 4.87 -17.43 -0.08 0.03 16 22 N -0.90 -25.79 11.01 55.49 0.61 -25.18 16 23 Si 0.90 21.24 29.58 -169.99 -5.03 16.21 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.16 3.38 5.65 -4.09 -0.02 3.36 16 28 C -0.15 -2.68 4.88 -28.58 -0.14 -2.82 16 29 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.06 0.45 6.44 -51.93 -0.33 0.11 16 31 H 0.08 0.88 7.25 -51.93 -0.38 0.50 16 32 H 0.11 0.67 7.13 -51.93 -0.37 0.30 16 33 H 0.11 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.15 0.72 7.95 -52.48 -0.42 0.30 16 35 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.08 1.48 7.23 -51.93 -0.38 1.10 16 38 H 0.05 0.74 8.05 -51.92 -0.42 0.32 16 39 H 0.05 0.90 7.31 -51.93 -0.38 0.52 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 42 H 0.07 1.93 6.33 -51.93 -0.33 1.60 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.05 1.04 7.99 -51.92 -0.41 0.63 16 45 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 46 H 0.06 1.17 7.62 -51.93 -0.40 0.77 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -32.71 375.29 -8.85 -41.56 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.04 Total: -0.10 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.23 Total: 2.05 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.33 Total: -54.37 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.71 -8.85 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948554043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.414 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds