Wall clock time and date at job start Tue Mar 31 2020 18:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34782 * 119.99968 * 2 1 4 4 O 1.21283 * 119.99931 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99918 * 359.97438 * 3 2 1 6 6 C 1.50707 * 109.47008 * 180.02562 * 5 3 2 7 7 N 1.31869 * 119.63197 * 269.72402 * 6 5 3 8 8 C 1.31845 * 121.74615 * 179.75245 * 7 6 5 9 9 C 1.38237 * 120.82351 * 0.52542 * 8 7 6 10 10 C 1.38596 * 119.18476 * 359.74837 * 9 8 7 11 11 C 1.38417 * 119.63660 * 90.00374 * 6 5 3 12 12 F 1.35103 * 120.44197 * 359.94921 * 11 6 5 13 13 C 1.46498 * 120.00425 * 179.97438 * 2 1 3 14 14 H 1.09001 * 109.49474 * 180.02562 * 13 2 1 15 15 C 1.52576 * 109.48688 * 60.00139 * 13 2 1 16 16 C 1.47093 * 114.32353 * 155.02487 * 15 13 2 17 17 C 1.54872 * 110.32111 * 62.80309 * 16 15 13 18 18 N 1.44582 * 109.59956 * 288.72863 * 17 16 15 19 19 C 1.36930 * 118.64287 * 270.73154 * 18 17 16 20 20 H 1.08001 * 120.00466 * 26.50451 * 19 18 17 21 21 C 1.38820 * 119.99760 * 206.50993 * 19 18 17 22 22 N 1.31609 * 119.99811 * 15.67057 * 21 19 18 23 23 Si 1.86803 * 119.99718 * 195.67278 * 21 19 18 24 24 H 1.48493 * 109.46936 * 89.99938 * 23 21 19 25 25 H 1.48498 * 109.46919 * 209.99871 * 23 21 19 26 26 H 1.48494 * 109.47187 * 329.99814 * 23 21 19 27 27 C 1.47598 * 122.71156 * 90.72812 * 18 17 16 28 28 C 1.50883 * 109.48746 * 300.11820 * 13 2 1 29 29 H 1.09002 * 109.47784 * 270.00046 * 1 2 3 30 30 H 1.09005 * 109.47391 * 30.00437 * 1 2 3 31 31 H 1.08999 * 109.47296 * 150.00049 * 1 2 3 32 32 H 1.09003 * 109.47415 * 300.00122 * 5 3 2 33 33 H 1.09005 * 109.47067 * 60.00188 * 5 3 2 34 34 H 1.07999 * 119.59478 * 180.25013 * 8 7 6 35 35 H 1.07998 * 120.40932 * 179.76301 * 9 8 7 36 36 H 1.07997 * 120.79845 * 179.97438 * 10 9 8 37 37 H 1.08992 * 108.50940 * 33.77050 * 15 13 2 38 38 H 1.08997 * 108.38588 * 276.18652 * 15 13 2 39 39 H 1.08994 * 109.33231 * 302.54338 * 16 15 13 40 40 H 1.08996 * 109.18753 * 182.97104 * 16 15 13 41 41 H 1.09001 * 109.45003 * 48.76957 * 17 16 15 42 42 H 1.08998 * 109.44853 * 168.69290 * 17 16 15 43 43 H 0.97009 * 119.99628 * 180.02562 * 22 21 19 44 44 H 1.09005 * 108.94916 * 197.18343 * 27 18 17 45 45 H 1.09003 * 108.87582 * 78.50951 * 27 18 17 46 46 H 1.08996 * 109.36560 * 332.03624 * 28 13 2 47 47 H 1.09005 * 109.36899 * 91.65765 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3646 3.6178 -0.0011 7 7 2.7841 4.1175 1.1449 8 6 3.6438 5.1159 1.1931 9 6 4.1323 5.6867 0.0327 10 6 3.7115 5.1934 -1.1922 11 6 2.8094 4.1375 -1.2044 12 9 2.3722 3.6242 -2.3751 13 6 2.1975 -1.2687 0.0006 14 1 3.2692 -1.0698 0.0009 15 6 1.8292 -2.0696 -1.2448 16 6 2.8557 -3.0331 -1.6709 17 6 3.0739 -4.1061 -0.5756 18 7 3.7530 -3.5139 0.5551 19 6 5.1221 -3.5145 0.5725 20 1 5.6741 -3.5366 -0.3556 21 6 5.8009 -3.4869 1.7832 22 7 5.1650 -3.7684 2.9006 23 14 7.6166 -3.0502 1.8262 24 1 7.7688 -1.5823 1.9911 25 1 8.2663 -3.7464 2.9657 26 1 8.2581 -3.4748 0.5560 27 6 3.0312 -2.9085 1.6913 28 6 1.8311 -2.0609 1.2313 29 1 -0.3635 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 0.7589 2.5299 -0.8908 33 1 0.7583 2.5302 0.8892 34 1 3.9671 5.4956 2.1511 35 1 4.8333 6.5069 0.0800 36 1 4.0760 5.6200 -2.1149 37 1 1.6475 -1.3729 -2.0630 38 1 0.9064 -2.6135 -1.0433 39 1 3.7926 -2.5061 -1.8513 40 1 2.5315 -3.5182 -2.5916 41 1 2.1090 -4.4987 -0.2547 42 1 3.6798 -4.9178 -0.9784 43 1 5.6392 -3.7488 3.7466 44 1 3.7192 -2.2739 2.2501 45 1 2.6730 -3.7035 2.3455 46 1 1.5447 -1.3765 2.0297 47 1 0.9917 -2.7174 1.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948722762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:01 Heat of formation + Delta-G solvation = -14.693711 kcal Electronic energy + Delta-G solvation = -30070.655455 eV Core-core repulsion = 25975.937343 eV Total energy + Delta-G solvation = -4094.718112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.14163 -40.51549 -39.64509 -37.62374 -35.23844 -33.51961 -33.01978 -32.08089 -31.16070 -30.52316 -28.41634 -26.86991 -25.81376 -24.20245 -23.75920 -23.22479 -22.67365 -19.99163 -19.40616 -18.72179 -17.88561 -17.44462 -17.09781 -16.64652 -16.47897 -15.92946 -15.60034 -15.34220 -14.82622 -14.34384 -14.18474 -13.94481 -13.81195 -13.58707 -13.41590 -13.24436 -13.12443 -12.97731 -12.84733 -12.36992 -12.28046 -12.20090 -11.97261 -11.86171 -11.31269 -11.02931 -10.76521 -10.69133 -10.33308 -10.22768 -10.12700 -9.95177 -9.90165 -9.79254 -9.67954 -9.52272 -9.48267 -8.99010 -8.34468 -8.28212 -6.58833 -5.69381 -3.12619 0.70181 0.88762 2.85924 3.10612 3.46813 3.52236 3.53226 3.54947 3.80510 4.05711 4.35281 4.47847 4.59802 4.68359 4.71920 5.05894 5.07836 5.19639 5.26490 5.33944 5.34832 5.46635 5.49510 5.59489 5.60886 5.63075 5.70697 5.76405 5.86133 6.01799 6.14241 6.24997 6.32232 6.39038 6.52677 6.59031 6.69037 6.74127 6.81314 6.92237 7.06356 7.13604 7.48843 7.64440 7.66895 7.77405 7.92094 8.43522 8.56388 9.33070 9.99954 10.44110 11.38308 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.003842 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.623627 B = 7286.406161 C = 8585.070495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.610 5.610 3 C 0.517 3.483 4 O -0.525 6.525 5 C -0.095 4.095 6 C 0.129 3.871 7 N -0.447 5.447 8 C 0.094 3.906 9 C -0.148 4.148 10 C -0.108 4.108 11 C 0.060 3.940 12 F -0.128 7.128 13 C 0.149 3.851 14 H 0.116 0.884 15 C -0.106 4.106 16 C -0.146 4.146 17 C 0.158 3.842 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.065 0.935 21 C 0.006 3.994 22 N -0.905 5.905 23 Si 0.898 3.102 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.183 3.817 28 C -0.147 4.147 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.165 0.835 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.031 0.969 42 H 0.046 0.954 43 H 0.252 0.748 44 H 0.075 0.925 45 H 0.027 0.973 46 H 0.056 0.944 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.687 17.011 -7.147 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.344 5.344 3 C 0.304 3.696 4 O -0.401 6.401 5 C -0.136 4.136 6 C -0.011 4.011 7 N -0.155 5.155 8 C -0.063 4.063 9 C -0.168 4.168 10 C -0.135 4.135 11 C 0.038 3.962 12 F -0.107 7.107 13 C 0.048 3.952 14 H 0.133 0.867 15 C -0.144 4.144 16 C -0.186 4.186 17 C 0.030 3.970 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.083 0.917 21 C -0.192 4.192 22 N -0.550 5.550 23 Si 0.728 3.272 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.057 3.943 28 C -0.187 4.187 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.182 0.818 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.045 0.955 46 H 0.075 0.925 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.322 16.598 -6.222 21.034 hybrid contribution 1.083 0.593 -0.911 1.535 sum -10.240 17.192 -7.134 21.244 Atomic orbital electron populations 1.21752 0.80426 1.02806 1.01790 1.48115 1.06612 1.06399 1.73246 1.20117 0.88027 0.84670 0.76825 1.90768 1.13663 1.86954 1.48685 1.20623 0.97080 0.89900 1.05959 1.20662 0.97067 0.95982 0.87356 1.67494 1.10944 1.09745 1.27344 1.22831 0.92774 0.91710 0.98989 1.22073 1.00897 1.01547 0.92233 1.21624 0.96090 0.95421 1.00323 1.18501 0.98910 0.96547 0.82219 1.91512 1.87883 1.85993 1.45289 1.20689 0.98976 0.80760 0.94804 0.86658 1.20633 0.99287 0.97734 0.96758 1.21459 0.98893 0.99026 0.99270 1.20691 0.95434 0.92815 0.88086 1.43664 1.02792 1.65372 1.19447 1.19204 0.81917 1.45438 0.92040 0.91740 1.24987 0.97706 1.00383 0.96112 1.70054 1.35669 1.51555 0.97691 0.86349 0.85406 0.78334 0.77066 1.21398 1.21833 1.20464 1.20949 0.90455 0.94252 0.88622 1.22431 1.00892 0.98644 0.96688 0.92544 0.91629 0.90797 0.87228 0.86499 0.81819 0.83719 0.83516 0.93658 0.93189 0.91956 0.93201 0.95021 0.93608 0.93775 0.90618 0.95463 0.92493 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 9.60 59.84 0.57 1.37 16 2 N -0.61 -9.55 2.59 -175.42 -0.46 -10.01 16 3 C 0.52 8.86 7.67 -10.99 -0.08 8.77 16 4 O -0.53 -11.69 15.36 5.56 0.09 -11.60 16 5 C -0.10 -1.20 4.37 -29.03 -0.13 -1.32 16 6 C 0.13 1.80 5.28 -82.51 -0.44 1.36 16 7 N -0.45 -6.28 10.27 -9.42 -0.10 -6.37 16 8 C 0.09 1.02 11.18 -17.55 -0.20 0.82 16 9 C -0.15 -1.33 10.11 -39.45 -0.40 -1.73 16 10 C -0.11 -1.11 10.16 -39.21 -0.40 -1.51 16 11 C 0.06 0.78 7.27 -39.28 -0.29 0.49 16 12 F -0.13 -1.69 16.49 2.25 0.04 -1.66 16 13 C 0.15 2.81 2.14 -69.21 -0.15 2.66 16 14 H 0.12 2.78 6.24 -51.93 -0.32 2.45 16 15 C -0.11 -1.77 3.96 -29.78 -0.12 -1.89 16 16 C -0.15 -2.67 5.74 -28.58 -0.16 -2.83 16 17 C 0.16 3.33 5.65 -4.08 -0.02 3.30 16 18 N -0.59 -14.94 2.27 -172.08 -0.39 -15.33 16 19 C -0.26 -7.23 9.44 -15.06 -0.14 -7.37 16 20 H 0.06 1.81 7.88 -52.49 -0.41 1.40 16 21 C 0.01 0.19 4.87 -17.43 -0.08 0.10 16 22 N -0.91 -26.93 11.01 55.49 0.61 -26.32 16 23 Si 0.90 22.92 29.58 -169.99 -5.03 17.89 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 27 C 0.18 4.47 4.67 -2.94 -0.01 4.46 16 28 C -0.15 -2.82 4.86 -27.30 -0.13 -2.96 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 31 H 0.07 0.73 7.00 -51.93 -0.36 0.37 16 32 H 0.11 1.08 6.89 -51.93 -0.36 0.72 16 33 H 0.12 1.24 8.11 -51.93 -0.42 0.82 16 34 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.04 0.72 8.04 -51.93 -0.42 0.30 16 38 H 0.05 0.75 6.94 -51.93 -0.36 0.39 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.62 8.06 -51.93 -0.42 0.21 16 42 H 0.05 0.98 7.99 -51.93 -0.41 0.56 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.08 2.13 6.33 -51.93 -0.33 1.80 16 45 H 0.03 0.71 8.03 -51.93 -0.42 0.30 16 46 H 0.06 1.06 7.99 -51.93 -0.41 0.64 16 47 H 0.05 0.84 7.31 -51.93 -0.38 0.46 16 LS Contribution 376.04 15.07 5.67 5.67 Total: -1.00 -35.04 376.04 -8.79 -43.83 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.04 Total: 0.16 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -2.18 Total: 3.74 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.33 Total: -58.03 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.03 Total: 17.89 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.04 -8.79 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948722762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.137 kcal (2) G-P(sol) polarization free energy of solvation -35.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds