Wall clock time and date at job start Tue Mar 31 2020 18:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34782 * 119.99968 * 2 1 4 4 O 1.21283 * 119.99931 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99918 * 359.97438 * 3 2 1 6 6 C 1.50707 * 109.47008 * 180.02562 * 5 3 2 7 7 N 1.31869 * 119.63197 * 269.72402 * 6 5 3 8 8 C 1.31845 * 121.74615 * 179.75245 * 7 6 5 9 9 C 1.38237 * 120.82351 * 0.52542 * 8 7 6 10 10 C 1.38596 * 119.18476 * 359.74837 * 9 8 7 11 11 C 1.38417 * 119.63660 * 90.00374 * 6 5 3 12 12 F 1.35103 * 120.44197 * 359.94921 * 11 6 5 13 13 C 1.46498 * 120.00425 * 179.97438 * 2 1 3 14 14 H 1.09001 * 109.49474 * 180.02562 * 13 2 1 15 15 C 1.52576 * 109.48688 * 60.00139 * 13 2 1 16 16 C 1.47093 * 114.32353 * 155.02487 * 15 13 2 17 17 C 1.54872 * 110.32111 * 62.80309 * 16 15 13 18 18 N 1.44582 * 109.59956 * 288.72863 * 17 16 15 19 19 C 1.36930 * 118.64287 * 270.73154 * 18 17 16 20 20 H 1.08001 * 120.00466 * 26.50451 * 19 18 17 21 21 C 1.38820 * 119.99760 * 206.50993 * 19 18 17 22 22 N 1.31609 * 119.99811 * 15.67057 * 21 19 18 23 23 Si 1.86803 * 119.99718 * 195.67278 * 21 19 18 24 24 H 1.48493 * 109.46936 * 89.99938 * 23 21 19 25 25 H 1.48498 * 109.46919 * 209.99871 * 23 21 19 26 26 H 1.48494 * 109.47187 * 329.99814 * 23 21 19 27 27 C 1.47598 * 122.71156 * 90.72812 * 18 17 16 28 28 C 1.50883 * 109.48746 * 300.11820 * 13 2 1 29 29 H 1.09002 * 109.47784 * 270.00046 * 1 2 3 30 30 H 1.09005 * 109.47391 * 30.00437 * 1 2 3 31 31 H 1.08999 * 109.47296 * 150.00049 * 1 2 3 32 32 H 1.09003 * 109.47415 * 300.00122 * 5 3 2 33 33 H 1.09005 * 109.47067 * 60.00188 * 5 3 2 34 34 H 1.07999 * 119.59478 * 180.25013 * 8 7 6 35 35 H 1.07998 * 120.40932 * 179.76301 * 9 8 7 36 36 H 1.07997 * 120.79845 * 179.97438 * 10 9 8 37 37 H 1.08992 * 108.50940 * 33.77050 * 15 13 2 38 38 H 1.08997 * 108.38588 * 276.18652 * 15 13 2 39 39 H 1.08994 * 109.33231 * 302.54338 * 16 15 13 40 40 H 1.08996 * 109.18753 * 182.97104 * 16 15 13 41 41 H 1.09001 * 109.45003 * 48.76957 * 17 16 15 42 42 H 1.08998 * 109.44853 * 168.69290 * 17 16 15 43 43 H 0.97009 * 119.99628 * 180.02562 * 22 21 19 44 44 H 1.09005 * 108.94916 * 197.18343 * 27 18 17 45 45 H 1.09003 * 108.87582 * 78.50951 * 27 18 17 46 46 H 1.08996 * 109.36560 * 332.03624 * 28 13 2 47 47 H 1.09005 * 109.36899 * 91.65765 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3646 3.6178 -0.0011 7 7 2.7841 4.1175 1.1449 8 6 3.6438 5.1159 1.1931 9 6 4.1323 5.6867 0.0327 10 6 3.7115 5.1934 -1.1922 11 6 2.8094 4.1375 -1.2044 12 9 2.3722 3.6242 -2.3751 13 6 2.1975 -1.2687 0.0006 14 1 3.2692 -1.0698 0.0009 15 6 1.8292 -2.0696 -1.2448 16 6 2.8557 -3.0331 -1.6709 17 6 3.0739 -4.1061 -0.5756 18 7 3.7530 -3.5139 0.5551 19 6 5.1221 -3.5145 0.5725 20 1 5.6741 -3.5366 -0.3556 21 6 5.8009 -3.4869 1.7832 22 7 5.1650 -3.7684 2.9006 23 14 7.6166 -3.0502 1.8262 24 1 7.7688 -1.5823 1.9911 25 1 8.2663 -3.7464 2.9657 26 1 8.2581 -3.4748 0.5560 27 6 3.0312 -2.9085 1.6913 28 6 1.8311 -2.0609 1.2313 29 1 -0.3635 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 0.7589 2.5299 -0.8908 33 1 0.7583 2.5302 0.8892 34 1 3.9671 5.4956 2.1511 35 1 4.8333 6.5069 0.0800 36 1 4.0760 5.6200 -2.1149 37 1 1.6475 -1.3729 -2.0630 38 1 0.9064 -2.6135 -1.0433 39 1 3.7926 -2.5061 -1.8513 40 1 2.5315 -3.5182 -2.5916 41 1 2.1090 -4.4987 -0.2547 42 1 3.6798 -4.9178 -0.9784 43 1 5.6392 -3.7488 3.7466 44 1 3.7192 -2.2739 2.2501 45 1 2.6730 -3.7035 2.3455 46 1 1.5447 -1.3765 2.0297 47 1 0.9917 -2.7174 1.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948722762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:00 Heat of formation + Delta-G solvation = -36.875592 kcal Electronic energy + Delta-G solvation = -30071.617333 eV Core-core repulsion = 25975.937343 eV Total energy + Delta-G solvation = -4095.679990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.07795 -41.57710 -40.78679 -39.20928 -36.79415 -34.94794 -34.25571 -33.10001 -32.72938 -32.34827 -29.45192 -28.06322 -27.47498 -25.73624 -25.09445 -24.62107 -23.72674 -21.37393 -21.19227 -20.07412 -18.77691 -18.61652 -18.32224 -18.26539 -17.55340 -17.12566 -16.80521 -16.67183 -16.47890 -15.99497 -15.65364 -15.09303 -14.99699 -14.93232 -14.69730 -14.43462 -14.27787 -14.13061 -14.03988 -13.80067 -13.68865 -13.24119 -13.17286 -13.10332 -12.95145 -12.83093 -12.81475 -12.40121 -12.09761 -12.05142 -11.80590 -11.54217 -11.39526 -11.35993 -11.03801 -10.77074 -10.65264 -10.46400 -9.89273 -9.60538 -8.66939 -7.88832 -5.33271 -0.15279 0.07037 1.36959 1.42234 1.47829 1.59779 1.97838 2.47387 2.61178 2.96415 3.19413 3.25177 3.50960 3.62309 3.66766 3.74500 3.88108 3.95983 4.06943 4.22820 4.29757 4.34697 4.41332 4.44331 4.47142 4.53142 4.64837 4.68360 4.74029 4.81554 4.88000 4.91412 4.97606 4.98895 5.04545 5.13765 5.20212 5.22377 5.36302 5.52398 5.56571 5.59482 5.63767 5.69879 5.76375 6.38888 6.44116 6.80784 7.16732 7.18292 7.94953 8.31374 9.15997 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.003842 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.623627 B = 7286.406161 C = 8585.070495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.608 5.608 3 C 0.508 3.492 4 O -0.590 6.590 5 C -0.084 4.084 6 C 0.101 3.899 7 N -0.482 5.482 8 C 0.080 3.920 9 C -0.135 4.135 10 C -0.111 4.111 11 C 0.036 3.964 12 F -0.135 7.135 13 C 0.156 3.844 14 H 0.054 0.946 15 C -0.101 4.101 16 C -0.133 4.133 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.261 4.261 20 H 0.059 0.941 21 C -0.046 4.046 22 N -0.932 5.932 23 Si 0.953 3.047 24 H -0.298 1.298 25 H -0.287 1.287 26 H -0.267 1.267 27 C 0.194 3.806 28 C -0.129 4.129 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.190 0.810 35 H 0.186 0.814 36 H 0.174 0.826 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.027 0.973 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.248 0.752 44 H 0.026 0.974 45 H 0.004 0.996 46 H 0.060 0.940 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.725 18.455 -8.716 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.339 5.339 3 C 0.297 3.703 4 O -0.471 6.471 5 C -0.124 4.124 6 C -0.038 4.038 7 N -0.190 5.190 8 C -0.077 4.077 9 C -0.154 4.154 10 C -0.137 4.137 11 C 0.014 3.986 12 F -0.114 7.114 13 C 0.052 3.948 14 H 0.072 0.928 15 C -0.139 4.139 16 C -0.174 4.174 17 C 0.025 3.975 18 N -0.327 5.327 19 C -0.392 4.392 20 H 0.077 0.923 21 C -0.241 4.241 22 N -0.578 5.578 23 Si 0.782 3.218 24 H -0.226 1.226 25 H -0.213 1.213 26 H -0.192 1.192 27 C 0.068 3.932 28 C -0.168 4.168 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.207 0.793 35 H 0.204 0.796 36 H 0.192 0.808 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.046 0.954 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.022 0.978 46 H 0.079 0.921 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.429 18.026 -7.829 23.802 hybrid contribution 1.731 0.188 -0.432 1.794 sum -11.698 18.213 -8.261 23.169 Atomic orbital electron populations 1.22151 0.76712 1.05266 1.03458 1.48152 1.08743 1.04819 1.72229 1.20966 0.87578 0.86339 0.75463 1.90733 1.16681 1.87939 1.51709 1.20633 0.96742 0.86853 1.08153 1.20858 0.98242 0.96837 0.87847 1.67475 1.12493 1.11227 1.27846 1.23435 0.92142 0.91100 1.01033 1.22522 1.00236 1.01651 0.90985 1.22067 0.95030 0.94501 1.02104 1.18787 1.00134 0.97778 0.81852 1.91480 1.88130 1.86305 1.45491 1.20287 0.96270 0.82509 0.95689 0.92764 1.20563 0.99745 0.97606 0.95980 1.21313 0.98080 0.98308 0.99668 1.20907 0.95781 0.93396 0.87376 1.43848 1.02172 1.66120 1.20590 1.19449 0.83779 1.44190 0.91789 0.92340 1.25635 1.01230 1.01229 0.96023 1.70186 1.36766 1.53041 0.97821 0.85477 0.81656 0.77132 0.77564 1.22615 1.21293 1.19150 1.20643 0.91103 0.93262 0.88164 1.22194 0.99092 0.98411 0.97130 0.91236 0.88380 0.89269 0.84336 0.84561 0.79330 0.79635 0.80813 0.92131 0.89955 0.95404 0.89566 0.92835 0.94397 0.94307 0.95495 0.97835 0.92138 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 9.60 127.77 1.23 2.36 16 2 N -0.61 -18.23 2.59 -827.28 -2.15 -20.37 16 3 C 0.51 17.45 7.67 87.65 0.67 18.13 16 4 O -0.59 -27.66 15.36 -3.04 -0.05 -27.71 16 5 C -0.08 -2.02 4.37 29.10 0.13 -1.89 16 6 C 0.10 2.79 5.28 42.60 0.22 3.02 16 7 N -0.48 -13.46 10.27 -183.71 -1.89 -15.35 16 8 C 0.08 1.64 11.18 84.69 0.95 2.59 16 9 C -0.13 -2.12 10.11 22.36 0.23 -1.90 16 10 C -0.11 -2.09 10.16 22.51 0.23 -1.86 16 11 C 0.04 0.91 7.27 22.47 0.16 1.08 16 12 F -0.14 -3.51 16.49 44.97 0.74 -2.77 16 13 C 0.16 5.82 2.14 44.16 0.09 5.91 16 14 H 0.05 2.75 6.24 -2.39 -0.01 2.73 16 15 C -0.10 -3.12 3.96 28.62 0.11 -3.01 16 16 C -0.13 -4.69 5.74 29.40 0.17 -4.52 16 17 C 0.15 6.30 5.65 87.38 0.49 6.79 16 18 N -0.60 -31.46 2.27 -698.33 -1.59 -33.05 16 19 C -0.26 -15.34 9.44 84.04 0.79 -14.55 16 20 H 0.06 3.42 7.88 -2.91 -0.02 3.40 16 21 C -0.05 -2.74 4.87 84.87 0.41 -2.33 16 22 N -0.93 -57.99 11.01 21.65 0.24 -57.75 16 23 Si 0.95 48.94 29.58 68.60 2.03 50.97 16 24 H -0.30 -15.76 7.11 99.48 0.71 -15.05 16 25 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 26 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 27 C 0.19 9.86 4.67 86.49 0.40 10.26 16 28 C -0.13 -4.89 4.86 30.23 0.15 -4.74 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.09 6.44 -2.38 -0.02 1.08 16 31 H 0.09 1.32 7.00 -2.39 -0.02 1.30 16 32 H 0.14 2.39 6.89 -2.39 -0.02 2.38 16 33 H 0.14 2.65 8.11 -2.38 -0.02 2.63 16 34 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 37 H 0.06 1.72 8.04 -2.39 -0.02 1.71 16 38 H 0.08 2.07 6.94 -2.39 -0.02 2.06 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.05 1.99 8.06 -2.39 -0.02 1.97 16 42 H 0.04 1.61 7.99 -2.39 -0.02 1.59 16 43 H 0.25 15.00 8.31 -92.70 -0.77 14.22 16 44 H 0.03 1.60 6.33 -2.38 -0.02 1.59 16 45 H 0.00 0.20 8.03 -2.39 -0.02 0.18 16 46 H 0.06 2.23 7.99 -2.39 -0.02 2.21 16 47 H 0.08 2.56 7.31 -2.38 -0.02 2.54 16 Total: -1.00 -84.28 376.04 4.76 -79.52 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.97 Total: 11.16 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 6.44 Total: 15.34 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -5.38 Total: -126.52 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.74 Total: -2.77 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.03 Total: 50.97 kcal Total: -84.28 4.76 -79.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948722762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.645 kcal (2) G-P(sol) polarization free energy of solvation -84.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds