Wall clock time and date at job start Tue Mar 31 2020 18:24:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.34778 * 120.00106 * 2 1
4 4 O 1.21284 * 120.00141 * 180.02562 * 3 2 1
5 5 C 1.50702 * 120.00053 * 359.97438 * 3 2 1
6 6 C 1.50703 * 109.47099 * 180.02562 * 5 3 2
7 7 N 1.31873 * 119.63570 * 90.00061 * 6 5 3
8 8 C 1.31845 * 121.74978 * 179.97438 * 7 6 5
9 9 C 1.38237 * 120.81774 * 0.02562 * 8 7 6
10 10 C 1.38589 * 119.19045 * 359.97438 * 9 8 7
11 11 C 1.38416 * 119.63431 * 269.72880 * 6 5 3
12 12 F 1.35096 * 120.44544 * 359.97438 * 11 6 5
13 13 C 1.46494 * 120.00002 * 179.97438 * 2 1 3
14 14 H 1.08996 * 110.21478 * 181.93568 * 13 2 1
15 15 C 1.50131 * 110.25120 * 304.02183 * 13 2 1
16 16 C 1.54837 * 110.81934 * 216.65359 * 15 13 2
17 17 C 1.54909 * 110.14139 * 321.13411 * 16 15 13
18 18 N 1.43435 * 116.07564 * 318.63921 * 17 16 15
19 19 C 1.36930 * 120.53399 * 271.54252 * 18 17 16
20 20 H 1.08001 * 120.00248 * 336.74710 * 19 18 17
21 21 C 1.38816 * 120.00177 * 156.74652 * 19 18 17
22 22 N 1.31619 * 119.99306 * 340.40946 * 21 19 18
23 23 Si 1.86797 * 120.00254 * 160.40345 * 21 19 18
24 24 H 1.48492 * 109.47195 * 0.02562 * 23 21 19
25 25 H 1.48503 * 109.46775 * 120.00329 * 23 21 19
26 26 H 1.48498 * 109.47123 * 240.00248 * 23 21 19
27 27 C 1.50171 * 118.92514 * 91.56913 * 18 17 16
28 28 C 1.46234 * 107.53057 * 289.58631 * 27 18 17
29 29 H 1.08997 * 109.47426 * 270.00729 * 1 2 3
30 30 H 1.08998 * 109.47174 * 150.00076 * 1 2 3
31 31 H 1.09004 * 109.47034 * 30.00379 * 1 2 3
32 32 H 1.09003 * 109.46802 * 300.00347 * 5 3 2
33 33 H 1.09000 * 109.46973 * 60.00271 * 5 3 2
34 34 H 1.08000 * 119.59019 * 180.02562 * 8 7 6
35 35 H 1.07999 * 120.40091 * 180.02562 * 9 8 7
36 36 H 1.07999 * 120.79559 * 180.02562 * 10 9 8
37 37 H 1.09002 * 109.20469 * 336.99683 * 15 13 2
38 38 H 1.09000 * 109.20938 * 96.30760 * 15 13 2
39 39 H 1.08992 * 109.36321 * 200.92694 * 16 15 13
40 40 H 1.09006 * 109.35989 * 81.33550 * 16 15 13
41 41 H 1.08994 * 108.15513 * 196.91997 * 17 16 15
42 42 H 1.08999 * 108.15795 * 80.35194 * 17 16 15
43 43 H 0.97008 * 119.99511 * 179.97438 * 22 21 19
44 44 H 1.08996 * 109.83999 * 170.07867 * 27 18 17
45 45 H 1.08994 * 109.84409 * 49.09474 * 27 18 17
46 46 H 1.09000 * 108.52190 * 297.16941 * 28 27 18
47 47 H 1.08998 * 108.40121 * 179.56770 * 28 27 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 3.3517 1.1672 -0.0005
5 6 1.3854 2.4723 -0.0006
6 6 2.3648 3.6178 -0.0011
7 7 2.7885 4.1129 -1.1475
8 6 3.6444 5.1146 -1.1966
9 6 4.1327 5.6863 -0.0366
10 6 3.7116 5.1944 1.1886
11 6 2.8052 4.1422 1.2018
12 9 2.3627 3.6345 2.3729
13 6 2.1975 -1.2687 0.0006
14 1 3.2711 -1.0837 0.0350
15 6 1.7748 -2.1122 1.1683
16 6 2.9794 -2.8943 1.7469
17 6 3.8919 -3.3940 0.5992
18 7 3.2222 -3.9139 -0.5578
19 6 2.8803 -5.2380 -0.6273
20 1 3.4111 -5.9649 -0.0305
21 6 1.8512 -5.6461 -1.4650
22 7 0.9626 -4.7727 -1.8892
23 14 1.7279 -7.4345 -1.9901
24 1 2.8398 -8.2072 -1.3805
25 1 0.4295 -7.9949 -1.5369
26 1 1.8159 -7.5231 -3.4698
27 6 2.9027 -2.9827 -1.6918
28 6 1.8418 -2.0842 -1.2384
29 1 -0.3634 0.0001 1.0276
30 1 -0.3633 -0.8900 -0.5138
31 1 -0.3633 0.8900 -0.5139
32 1 0.7591 2.5298 -0.8908
33 1 0.7585 2.5303 0.8892
34 1 3.9679 5.4932 -2.1550
35 1 4.8333 6.5069 -0.0847
36 1 4.0762 5.6218 2.1110
37 1 1.3592 -1.4687 1.9438
38 1 1.0115 -2.8189 0.8427
39 1 2.6153 -3.7488 2.3171
40 1 3.5520 -2.2407 2.4052
41 1 4.5401 -4.1751 0.9962
42 1 4.5237 -2.5645 0.2818
43 1 0.2437 -5.0578 -2.4748
44 1 2.5602 -3.5541 -2.5544
45 1 3.7883 -2.4054 -1.9572
46 1 0.9549 -2.6786 -1.0188
47 1 1.6038 -1.3959 -2.0494
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000948722763.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:24:04
Heat of formation + Delta-G solvation = -26.249485 kcal
Electronic energy + Delta-G solvation = -29975.697928 eV
Core-core repulsion = 25880.478720 eV
Total energy + Delta-G solvation = -4095.219208 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.175 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-50.04644 -41.57822 -40.79187 -39.24849 -36.71456 -34.72435 -34.14458 -33.10199
-32.69352 -32.34332 -29.44821 -28.05013 -27.64864 -25.65555 -24.92757 -24.58906
-23.72240 -21.72634 -20.95981 -19.93340 -18.73462 -18.63306 -18.28724 -18.27262
-17.49295 -16.97475 -16.88070 -16.61997 -16.42717 -15.68691 -15.54715 -15.36450
-14.98927 -14.87964 -14.65774 -14.55156 -14.25429 -14.08773 -13.99087 -13.63197
-13.47388 -13.32384 -13.20845 -13.05437 -12.97465 -12.87970 -12.63671 -12.51865
-12.03599 -11.83091 -11.70965 -11.64118 -11.21009 -11.04968 -11.01784 -10.76364
-10.61494 -10.47215 -9.86187 -9.57087 -8.68013 -7.81987 -5.22680 -0.11908
0.10625 1.47697 1.51766 1.58628 1.60205 1.98089 2.55128 2.64376
2.99070 3.22686 3.31363 3.54281 3.56413 3.63393 3.77764 3.99095
4.00497 4.14862 4.20451 4.28603 4.30919 4.40023 4.51456 4.56608
4.58286 4.62119 4.71167 4.74882 4.83307 4.88620 4.91812 4.93442
5.02052 5.06845 5.17151 5.20485 5.32661 5.34288 5.48978 5.58467
5.63706 5.68921 5.72846 6.05111 6.41688 6.46543 6.84292 7.14079
7.17499 7.88945 8.41801 9.23257
Molecular weight = 335.18amu
Principal moments of inertia in cm(-1)
A = 0.023774 B = 0.002776 C = 0.002736
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1177.472692 B =10084.013906 C =10229.643774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.603 5.603
3 C 0.515 3.485
4 O -0.585 6.585
5 C -0.087 4.087
6 C 0.102 3.898
7 N -0.480 5.480
8 C 0.082 3.918
9 C -0.133 4.133
10 C -0.110 4.110
11 C 0.036 3.964
12 F -0.137 7.137
13 C 0.155 3.845
14 H 0.073 0.927
15 C -0.099 4.099
16 C -0.133 4.133
17 C 0.151 3.849
18 N -0.600 5.600
19 C -0.260 4.260
20 H 0.062 0.938
21 C -0.040 4.040
22 N -0.915 5.915
23 Si 0.958 3.042
24 H -0.276 1.276
25 H -0.293 1.293
26 H -0.293 1.293
27 C 0.172 3.828
28 C -0.116 4.116
29 H 0.074 0.926
30 H 0.067 0.933
31 H 0.099 0.901
32 H 0.135 0.865
33 H 0.134 0.866
34 H 0.192 0.808
35 H 0.187 0.813
36 H 0.174 0.826
37 H 0.060 0.940
38 H 0.051 0.949
39 H 0.051 0.949
40 H 0.064 0.936
41 H 0.033 0.967
42 H 0.029 0.971
43 H 0.248 0.752
44 H 0.066 0.934
45 H 0.007 0.993
46 H 0.085 0.915
47 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.643 22.981 5.291 23.591
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.335 5.335
3 C 0.304 3.696
4 O -0.466 6.466
5 C -0.127 4.127
6 C -0.036 4.036
7 N -0.189 5.189
8 C -0.075 4.075
9 C -0.152 4.152
10 C -0.136 4.136
11 C 0.015 3.985
12 F -0.116 7.116
13 C 0.052 3.948
14 H 0.091 0.909
15 C -0.138 4.138
16 C -0.174 4.174
17 C 0.023 3.977
18 N -0.322 5.322
19 C -0.390 4.390
20 H 0.080 0.920
21 C -0.236 4.236
22 N -0.560 5.560
23 Si 0.788 3.212
24 H -0.201 1.201
25 H -0.220 1.220
26 H -0.220 1.220
27 C 0.048 3.952
28 C -0.155 4.155
29 H 0.093 0.907
30 H 0.086 0.914
31 H 0.118 0.882
32 H 0.153 0.847
33 H 0.151 0.849
34 H 0.208 0.792
35 H 0.204 0.796
36 H 0.191 0.809
37 H 0.078 0.922
38 H 0.070 0.930
39 H 0.070 0.930
40 H 0.083 0.917
41 H 0.051 0.949
42 H 0.047 0.953
43 H 0.058 0.942
44 H 0.084 0.916
45 H 0.025 0.975
46 H 0.103 0.897
47 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges -0.483 22.534 4.445 22.973
hybrid contribution -0.020 -1.145 0.570 1.280
sum -0.503 21.389 5.016 21.975
Atomic orbital electron populations
1.22047 0.77478 1.04489 1.03276 1.48066 1.08382 1.05034 1.71978
1.20833 0.87627 0.85849 0.75322 1.90661 1.15989 1.87903 1.52051
1.20626 0.96932 0.87173 1.07971 1.20772 0.98149 0.96765 0.87953
1.67477 1.12322 1.11393 1.27670 1.23452 0.92077 0.90952 1.01043
1.22524 1.00252 1.01534 0.90927 1.22060 0.94984 0.94448 1.02156
1.18797 1.00037 0.97925 0.81771 1.91483 1.87994 1.86535 1.45549
1.20213 0.96121 0.82152 0.96352 0.90921 1.21568 0.98490 0.97257
0.96476 1.22722 0.97426 0.98758 0.98532 1.20500 0.93407 0.95992
0.87774 1.44340 1.68879 1.05893 1.13120 1.19418 1.11660 0.83999
1.23915 0.92030 1.25487 0.95226 1.00532 1.02321 1.70096 1.14186
1.34162 1.37595 0.85351 0.76992 0.81475 0.77384 1.20067 1.22023
1.22004 1.19978 0.93294 0.90225 0.91686 1.21066 1.02450 0.96610
0.95391 0.90745 0.91382 0.88220 0.84684 0.84851 0.79152 0.79603
0.80888 0.92177 0.92996 0.93037 0.91696 0.94903 0.95289 0.94211
0.91601 0.97535 0.89681 0.95149
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.62 9.44 127.77 1.21 2.83 16
2 N -0.60 -19.46 2.64 -828.71 -2.19 -21.64 16
3 C 0.51 17.04 7.67 87.66 0.67 17.71 16
4 O -0.59 -24.59 15.39 -3.04 -0.05 -24.64 16
5 C -0.09 -2.07 4.37 29.10 0.13 -1.94 16
6 C 0.10 2.64 5.28 42.60 0.22 2.86 16
7 N -0.48 -12.13 10.27 -183.71 -1.89 -14.01 16
8 C 0.08 1.43 11.18 84.69 0.95 2.38 16
9 C -0.13 -1.72 10.11 22.35 0.23 -1.50 16
10 C -0.11 -1.82 10.16 22.51 0.23 -1.59 16
11 C 0.04 0.85 7.27 22.47 0.16 1.01 16
12 F -0.14 -3.40 16.49 44.97 0.74 -2.65 16
13 C 0.15 6.08 2.30 43.91 0.10 6.18 16
14 H 0.07 3.25 5.12 -2.39 -0.01 3.24 16
15 C -0.10 -3.82 4.82 30.30 0.15 -3.67 16
16 C -0.13 -5.18 6.41 31.87 0.20 -4.98 16
17 C 0.15 6.69 5.17 87.60 0.45 7.15 16
18 N -0.60 -30.38 2.60 -707.84 -1.84 -32.22 16
19 C -0.26 -14.17 9.63 84.04 0.81 -13.36 16
20 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16
21 C -0.04 -2.13 4.91 84.86 0.42 -1.72 16
22 N -0.91 -50.22 9.43 21.65 0.20 -50.01 16
23 Si 0.96 44.37 29.60 68.60 2.03 46.40 16
24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16
25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16
26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16
27 C 0.17 8.49 5.24 83.58 0.44 8.93 16
28 C -0.12 -5.10 3.82 28.35 0.11 -4.99 16
29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
30 H 0.07 1.84 7.16 -2.39 -0.02 1.82 16
31 H 0.10 1.66 6.44 -2.38 -0.02 1.65 16
32 H 0.14 2.64 7.40 -2.39 -0.02 2.62 16
33 H 0.13 2.45 7.59 -2.39 -0.02 2.43 16
34 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16
35 H 0.19 0.78 8.06 -2.91 -0.02 0.75 16
36 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16
37 H 0.06 2.03 7.83 -2.39 -0.02 2.01 16
38 H 0.05 2.28 6.83 -2.39 -0.02 2.26 16
39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16
40 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16
41 H 0.03 1.43 7.99 -2.39 -0.02 1.41 16
42 H 0.03 1.27 6.89 -2.39 -0.02 1.25 16
43 H 0.25 13.31 8.31 -92.70 -0.77 12.54 16
44 H 0.07 3.59 6.05 -2.39 -0.01 3.57 16
45 H 0.01 0.32 8.12 -2.39 -0.02 0.30 16
46 H 0.08 4.15 5.08 -2.39 -0.01 4.14 16
47 H 0.03 1.29 8.02 -2.39 -0.02 1.28 16
Total: -1.00 -71.39 370.84 4.47 -66.92
By element:
Atomic # 1 Polarization: 15.57 SS G_CDS: 0.98 Total: 16.55 kcal
Atomic # 6 Polarization: 8.84 SS G_CDS: 6.47 Total: 15.31 kcal
Atomic # 7 Polarization: -112.18 SS G_CDS: -5.71 Total: -117.89 kcal
Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal
Atomic # 9 Polarization: -3.40 SS G_CDS: 0.74 Total: -2.65 kcal
Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal
Total: -71.39 4.47 -66.92 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000948722763.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.670 kcal
(2) G-P(sol) polarization free energy of solvation -71.388 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.718 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.249 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds