Wall clock time and date at job start Tue Mar 31 2020 18:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 120.00106 * 2 1 4 4 O 1.21284 * 120.00141 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00053 * 359.97438 * 3 2 1 6 6 C 1.50703 * 109.47099 * 180.02562 * 5 3 2 7 7 N 1.31873 * 119.63570 * 90.00061 * 6 5 3 8 8 C 1.31845 * 121.74978 * 179.97438 * 7 6 5 9 9 C 1.38237 * 120.81774 * 0.02562 * 8 7 6 10 10 C 1.38589 * 119.19045 * 359.97438 * 9 8 7 11 11 C 1.38416 * 119.63431 * 269.72880 * 6 5 3 12 12 F 1.35096 * 120.44544 * 359.97438 * 11 6 5 13 13 C 1.46494 * 120.00002 * 179.97438 * 2 1 3 14 14 H 1.08996 * 110.21478 * 181.93568 * 13 2 1 15 15 C 1.50131 * 110.25120 * 304.02183 * 13 2 1 16 16 C 1.54837 * 110.81934 * 216.65359 * 15 13 2 17 17 C 1.54909 * 110.14139 * 321.13411 * 16 15 13 18 18 N 1.43435 * 116.07564 * 318.63921 * 17 16 15 19 19 C 1.36930 * 120.53399 * 271.54252 * 18 17 16 20 20 H 1.08001 * 120.00248 * 336.74710 * 19 18 17 21 21 C 1.38816 * 120.00177 * 156.74652 * 19 18 17 22 22 N 1.31619 * 119.99306 * 340.40946 * 21 19 18 23 23 Si 1.86797 * 120.00254 * 160.40345 * 21 19 18 24 24 H 1.48492 * 109.47195 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46775 * 120.00329 * 23 21 19 26 26 H 1.48498 * 109.47123 * 240.00248 * 23 21 19 27 27 C 1.50171 * 118.92514 * 91.56913 * 18 17 16 28 28 C 1.46234 * 107.53057 * 289.58631 * 27 18 17 29 29 H 1.08997 * 109.47426 * 270.00729 * 1 2 3 30 30 H 1.08998 * 109.47174 * 150.00076 * 1 2 3 31 31 H 1.09004 * 109.47034 * 30.00379 * 1 2 3 32 32 H 1.09003 * 109.46802 * 300.00347 * 5 3 2 33 33 H 1.09000 * 109.46973 * 60.00271 * 5 3 2 34 34 H 1.08000 * 119.59019 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.40091 * 180.02562 * 9 8 7 36 36 H 1.07999 * 120.79559 * 180.02562 * 10 9 8 37 37 H 1.09002 * 109.20469 * 336.99683 * 15 13 2 38 38 H 1.09000 * 109.20938 * 96.30760 * 15 13 2 39 39 H 1.08992 * 109.36321 * 200.92694 * 16 15 13 40 40 H 1.09006 * 109.35989 * 81.33550 * 16 15 13 41 41 H 1.08994 * 108.15513 * 196.91997 * 17 16 15 42 42 H 1.08999 * 108.15795 * 80.35194 * 17 16 15 43 43 H 0.97008 * 119.99511 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.83999 * 170.07867 * 27 18 17 45 45 H 1.08994 * 109.84409 * 49.09474 * 27 18 17 46 46 H 1.09000 * 108.52190 * 297.16941 * 28 27 18 47 47 H 1.08998 * 108.40121 * 179.56770 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3648 3.6178 -0.0011 7 7 2.7885 4.1129 -1.1475 8 6 3.6444 5.1146 -1.1966 9 6 4.1327 5.6863 -0.0366 10 6 3.7116 5.1944 1.1886 11 6 2.8052 4.1422 1.2018 12 9 2.3627 3.6345 2.3729 13 6 2.1975 -1.2687 0.0006 14 1 3.2711 -1.0837 0.0350 15 6 1.7748 -2.1122 1.1683 16 6 2.9794 -2.8943 1.7469 17 6 3.8919 -3.3940 0.5992 18 7 3.2222 -3.9139 -0.5578 19 6 2.8803 -5.2380 -0.6273 20 1 3.4111 -5.9649 -0.0305 21 6 1.8512 -5.6461 -1.4650 22 7 0.9626 -4.7727 -1.8892 23 14 1.7279 -7.4345 -1.9901 24 1 2.8398 -8.2072 -1.3805 25 1 0.4295 -7.9949 -1.5369 26 1 1.8159 -7.5231 -3.4698 27 6 2.9027 -2.9827 -1.6918 28 6 1.8418 -2.0842 -1.2384 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 0.7591 2.5298 -0.8908 33 1 0.7585 2.5303 0.8892 34 1 3.9679 5.4932 -2.1550 35 1 4.8333 6.5069 -0.0847 36 1 4.0762 5.6218 2.1110 37 1 1.3592 -1.4687 1.9438 38 1 1.0115 -2.8189 0.8427 39 1 2.6153 -3.7488 2.3171 40 1 3.5520 -2.2407 2.4052 41 1 4.5401 -4.1751 0.9962 42 1 4.5237 -2.5645 0.2818 43 1 0.2437 -5.0578 -2.4748 44 1 2.5602 -3.5541 -2.5544 45 1 3.7883 -2.4054 -1.9572 46 1 0.9549 -2.6786 -1.0188 47 1 1.6038 -1.3959 -2.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948722763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:04 Heat of formation + Delta-G solvation = -26.249485 kcal Electronic energy + Delta-G solvation = -29975.697928 eV Core-core repulsion = 25880.478720 eV Total energy + Delta-G solvation = -4095.219208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.04644 -41.57822 -40.79187 -39.24849 -36.71456 -34.72435 -34.14458 -33.10199 -32.69352 -32.34332 -29.44821 -28.05013 -27.64864 -25.65555 -24.92757 -24.58906 -23.72240 -21.72634 -20.95981 -19.93340 -18.73462 -18.63306 -18.28724 -18.27262 -17.49295 -16.97475 -16.88070 -16.61997 -16.42717 -15.68691 -15.54715 -15.36450 -14.98927 -14.87964 -14.65774 -14.55156 -14.25429 -14.08773 -13.99087 -13.63197 -13.47388 -13.32384 -13.20845 -13.05437 -12.97465 -12.87970 -12.63671 -12.51865 -12.03599 -11.83091 -11.70965 -11.64118 -11.21009 -11.04968 -11.01784 -10.76364 -10.61494 -10.47215 -9.86187 -9.57087 -8.68013 -7.81987 -5.22680 -0.11908 0.10625 1.47697 1.51766 1.58628 1.60205 1.98089 2.55128 2.64376 2.99070 3.22686 3.31363 3.54281 3.56413 3.63393 3.77764 3.99095 4.00497 4.14862 4.20451 4.28603 4.30919 4.40023 4.51456 4.56608 4.58286 4.62119 4.71167 4.74882 4.83307 4.88620 4.91812 4.93442 5.02052 5.06845 5.17151 5.20485 5.32661 5.34288 5.48978 5.58467 5.63706 5.68921 5.72846 6.05111 6.41688 6.46543 6.84292 7.14079 7.17499 7.88945 8.41801 9.23257 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.023774 B = 0.002776 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.472692 B =10084.013906 C =10229.643774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.603 5.603 3 C 0.515 3.485 4 O -0.585 6.585 5 C -0.087 4.087 6 C 0.102 3.898 7 N -0.480 5.480 8 C 0.082 3.918 9 C -0.133 4.133 10 C -0.110 4.110 11 C 0.036 3.964 12 F -0.137 7.137 13 C 0.155 3.845 14 H 0.073 0.927 15 C -0.099 4.099 16 C -0.133 4.133 17 C 0.151 3.849 18 N -0.600 5.600 19 C -0.260 4.260 20 H 0.062 0.938 21 C -0.040 4.040 22 N -0.915 5.915 23 Si 0.958 3.042 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.172 3.828 28 C -0.116 4.116 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.192 0.808 35 H 0.187 0.813 36 H 0.174 0.826 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.248 0.752 44 H 0.066 0.934 45 H 0.007 0.993 46 H 0.085 0.915 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 22.981 5.291 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.335 5.335 3 C 0.304 3.696 4 O -0.466 6.466 5 C -0.127 4.127 6 C -0.036 4.036 7 N -0.189 5.189 8 C -0.075 4.075 9 C -0.152 4.152 10 C -0.136 4.136 11 C 0.015 3.985 12 F -0.116 7.116 13 C 0.052 3.948 14 H 0.091 0.909 15 C -0.138 4.138 16 C -0.174 4.174 17 C 0.023 3.977 18 N -0.322 5.322 19 C -0.390 4.390 20 H 0.080 0.920 21 C -0.236 4.236 22 N -0.560 5.560 23 Si 0.788 3.212 24 H -0.201 1.201 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.048 3.952 28 C -0.155 4.155 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.208 0.792 35 H 0.204 0.796 36 H 0.191 0.809 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.025 0.975 46 H 0.103 0.897 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.483 22.534 4.445 22.973 hybrid contribution -0.020 -1.145 0.570 1.280 sum -0.503 21.389 5.016 21.975 Atomic orbital electron populations 1.22047 0.77478 1.04489 1.03276 1.48066 1.08382 1.05034 1.71978 1.20833 0.87627 0.85849 0.75322 1.90661 1.15989 1.87903 1.52051 1.20626 0.96932 0.87173 1.07971 1.20772 0.98149 0.96765 0.87953 1.67477 1.12322 1.11393 1.27670 1.23452 0.92077 0.90952 1.01043 1.22524 1.00252 1.01534 0.90927 1.22060 0.94984 0.94448 1.02156 1.18797 1.00037 0.97925 0.81771 1.91483 1.87994 1.86535 1.45549 1.20213 0.96121 0.82152 0.96352 0.90921 1.21568 0.98490 0.97257 0.96476 1.22722 0.97426 0.98758 0.98532 1.20500 0.93407 0.95992 0.87774 1.44340 1.68879 1.05893 1.13120 1.19418 1.11660 0.83999 1.23915 0.92030 1.25487 0.95226 1.00532 1.02321 1.70096 1.14186 1.34162 1.37595 0.85351 0.76992 0.81475 0.77384 1.20067 1.22023 1.22004 1.19978 0.93294 0.90225 0.91686 1.21066 1.02450 0.96610 0.95391 0.90745 0.91382 0.88220 0.84684 0.84851 0.79152 0.79603 0.80888 0.92177 0.92996 0.93037 0.91696 0.94903 0.95289 0.94211 0.91601 0.97535 0.89681 0.95149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.62 9.44 127.77 1.21 2.83 16 2 N -0.60 -19.46 2.64 -828.71 -2.19 -21.64 16 3 C 0.51 17.04 7.67 87.66 0.67 17.71 16 4 O -0.59 -24.59 15.39 -3.04 -0.05 -24.64 16 5 C -0.09 -2.07 4.37 29.10 0.13 -1.94 16 6 C 0.10 2.64 5.28 42.60 0.22 2.86 16 7 N -0.48 -12.13 10.27 -183.71 -1.89 -14.01 16 8 C 0.08 1.43 11.18 84.69 0.95 2.38 16 9 C -0.13 -1.72 10.11 22.35 0.23 -1.50 16 10 C -0.11 -1.82 10.16 22.51 0.23 -1.59 16 11 C 0.04 0.85 7.27 22.47 0.16 1.01 16 12 F -0.14 -3.40 16.49 44.97 0.74 -2.65 16 13 C 0.15 6.08 2.30 43.91 0.10 6.18 16 14 H 0.07 3.25 5.12 -2.39 -0.01 3.24 16 15 C -0.10 -3.82 4.82 30.30 0.15 -3.67 16 16 C -0.13 -5.18 6.41 31.87 0.20 -4.98 16 17 C 0.15 6.69 5.17 87.60 0.45 7.15 16 18 N -0.60 -30.38 2.60 -707.84 -1.84 -32.22 16 19 C -0.26 -14.17 9.63 84.04 0.81 -13.36 16 20 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 21 C -0.04 -2.13 4.91 84.86 0.42 -1.72 16 22 N -0.91 -50.22 9.43 21.65 0.20 -50.01 16 23 Si 0.96 44.37 29.60 68.60 2.03 46.40 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 C 0.17 8.49 5.24 83.58 0.44 8.93 16 28 C -0.12 -5.10 3.82 28.35 0.11 -4.99 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.84 7.16 -2.39 -0.02 1.82 16 31 H 0.10 1.66 6.44 -2.38 -0.02 1.65 16 32 H 0.14 2.64 7.40 -2.39 -0.02 2.62 16 33 H 0.13 2.45 7.59 -2.39 -0.02 2.43 16 34 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.19 0.78 8.06 -2.91 -0.02 0.75 16 36 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 37 H 0.06 2.03 7.83 -2.39 -0.02 2.01 16 38 H 0.05 2.28 6.83 -2.39 -0.02 2.26 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.03 1.43 7.99 -2.39 -0.02 1.41 16 42 H 0.03 1.27 6.89 -2.39 -0.02 1.25 16 43 H 0.25 13.31 8.31 -92.70 -0.77 12.54 16 44 H 0.07 3.59 6.05 -2.39 -0.01 3.57 16 45 H 0.01 0.32 8.12 -2.39 -0.02 0.30 16 46 H 0.08 4.15 5.08 -2.39 -0.01 4.14 16 47 H 0.03 1.29 8.02 -2.39 -0.02 1.28 16 Total: -1.00 -71.39 370.84 4.47 -66.92 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.98 Total: 16.55 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 6.47 Total: 15.31 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -5.71 Total: -117.89 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.74 Total: -2.65 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -71.39 4.47 -66.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948722763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.670 kcal (2) G-P(sol) polarization free energy of solvation -71.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds