Wall clock time and date at job start Tue Mar 31 2020 18:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 119.99682 * 2 1 4 4 H 1.08004 * 119.99926 * 203.25131 * 3 2 1 5 5 C 1.38815 * 120.00087 * 23.25534 * 3 2 1 6 6 N 1.31609 * 119.99994 * 10.42227 * 5 3 2 7 7 Si 1.86801 * 119.99747 * 190.42402 * 5 3 2 8 8 H 1.48496 * 109.47094 * 59.99709 * 7 5 3 9 9 H 1.48498 * 109.46910 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47087 * 299.99699 * 7 5 3 11 11 C 1.46500 * 120.00071 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.63865 * 178.31470 * 11 2 1 13 13 C 1.55152 * 110.72378 * 301.45371 * 11 2 1 14 14 C 1.54913 * 101.57865 * 154.03899 * 13 11 2 15 15 N 1.47416 * 104.83622 * 322.99385 * 14 13 11 16 16 C 1.34776 * 125.64673 * 204.08766 * 15 14 13 17 17 O 1.21274 * 120.00572 * 4.27759 * 16 15 14 18 18 C 1.50701 * 119.99697 * 184.27282 * 16 15 14 19 19 H 1.08996 * 109.44668 * 318.47742 * 18 16 15 20 20 C 1.53126 * 109.41687 * 198.55920 * 18 16 15 21 21 C 1.53474 * 109.37765 * 170.21934 * 20 18 16 22 22 C 1.50794 * 108.08782 * 48.88190 * 21 20 18 23 23 N 1.29603 * 128.74095 * 164.03278 * 22 21 20 24 24 N 1.28868 * 109.79735 * 179.97438 * 23 22 21 25 25 C 1.31378 * 109.93175 * 0.36143 * 24 23 22 26 26 O 1.35530 * 126.58009 * 179.84209 * 25 24 23 27 27 N 1.35432 * 106.84207 * 359.57817 * 25 24 23 28 28 C 1.46195 * 129.14449 * 180.39221 * 27 25 24 29 29 C 1.47019 * 108.70305 * 24.35743 * 15 14 13 30 30 H 1.09002 * 109.47177 * 272.52817 * 1 2 3 31 31 H 1.08995 * 109.47109 * 32.53152 * 1 2 3 32 32 H 1.09006 * 109.46870 * 152.52943 * 1 2 3 33 33 H 0.97007 * 120.00171 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.00256 * 35.97007 * 13 11 2 35 35 H 1.08990 * 111.04250 * 272.13142 * 13 11 2 36 36 H 1.09001 * 110.36483 * 204.15262 * 14 13 11 37 37 H 1.09004 * 110.36406 * 81.83825 * 14 13 11 38 38 H 1.08996 * 109.48462 * 290.18995 * 20 18 16 39 39 H 1.08998 * 109.48211 * 50.24262 * 20 18 16 40 40 H 1.08996 * 109.73993 * 168.53295 * 21 20 18 41 41 H 1.09004 * 109.73508 * 289.23339 * 21 20 18 42 42 H 0.96703 * 113.99867 * 269.68097 * 26 25 24 43 43 H 1.08998 * 109.60371 * 282.69464 * 28 27 25 44 44 H 1.09008 * 109.60534 * 43.17732 * 28 27 25 45 45 H 1.08996 * 109.88667 * 118.12820 * 29 15 14 46 46 H 1.08999 * 109.88218 * 239.29521 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1639 1.2240 -0.3692 5 6 1.5401 2.3393 0.4746 6 7 0.3903 2.2620 1.1104 7 14 2.3518 4.0009 0.2109 8 1 2.5075 4.2503 -1.2446 9 1 1.5061 5.0653 0.8085 10 1 3.6875 4.0079 0.8600 11 6 2.1975 -1.2687 0.0006 12 1 3.2727 -1.0916 -0.0295 13 6 1.8163 -2.1222 1.2389 14 6 2.1054 -3.5562 0.7290 15 7 1.6994 -3.5420 -0.6881 16 6 1.3361 -4.6193 -1.4119 17 8 1.2506 -5.7061 -0.8806 18 6 1.0362 -4.4734 -2.8815 19 1 0.4608 -3.5623 -3.0457 20 6 0.2247 -5.6814 -3.3579 21 6 -0.2882 -5.4213 -4.7807 22 6 0.8716 -4.9407 -5.6160 23 7 0.9685 -4.8728 -6.9066 24 7 2.1239 -4.4050 -7.2336 25 6 2.8288 -4.1570 -6.1530 26 8 4.0895 -3.6616 -6.1071 27 7 2.0518 -4.4859 -5.0936 28 6 2.3520 -4.3958 -3.6656 29 6 1.7627 -2.1590 -1.1828 30 1 -0.3634 0.0453 1.0267 31 1 -0.3633 0.8664 -0.5526 32 1 -0.3633 -0.9119 -0.4741 33 1 -0.0358 3.0680 1.4418 34 1 0.7619 -2.0011 1.4872 35 1 2.4474 -1.8766 2.0928 36 1 1.5141 -4.2832 1.2858 37 1 3.1679 -3.7831 0.8171 38 1 0.8582 -6.5684 -3.3562 39 1 -0.6216 -5.8375 -2.6890 40 1 -0.6883 -6.3434 -5.2022 41 1 -1.0664 -4.6583 -4.7577 42 1 4.7789 -4.3396 -6.1114 43 1 3.0003 -5.2225 -3.3753 44 1 2.8477 -3.4480 -3.4552 45 1 2.4910 -2.0871 -1.9905 46 1 0.7805 -1.8469 -1.5376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971816996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:19 Heat of formation + Delta-G solvation = 42.491500 kcal Electronic energy + Delta-G solvation = -29889.659455 eV Core-core repulsion = 25817.341042 eV Total energy + Delta-G solvation = -4072.318413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.49396 -40.39266 -38.12246 -37.94556 -36.86460 -34.91729 -33.62123 -32.07578 -31.33534 -29.96341 -28.91737 -27.98593 -26.19395 -25.54121 -24.13088 -23.29967 -22.59291 -22.20581 -20.36828 -19.66581 -19.36707 -18.79192 -17.49566 -17.32330 -17.01863 -16.75109 -15.91330 -15.55904 -15.25730 -14.91649 -14.84881 -14.65306 -14.39445 -13.87803 -13.58621 -13.45061 -13.02306 -12.90440 -12.74703 -12.65310 -12.50297 -12.08561 -11.95651 -11.87465 -11.61987 -11.46463 -11.38257 -11.06166 -10.88738 -10.78053 -10.58382 -10.51739 -10.44265 -10.37426 -10.14428 -10.01314 -9.86327 -9.26844 -8.69620 -8.60109 -6.96098 -5.88892 -3.37212 1.31581 1.74442 2.39739 2.47090 2.86145 3.29755 3.36182 3.36267 3.42206 3.82009 3.98676 4.09410 4.13701 4.35827 4.58774 4.62773 4.76649 4.87475 4.99510 5.03910 5.07730 5.18190 5.22103 5.32327 5.39203 5.43549 5.50720 5.56074 5.60282 5.64189 5.73352 5.74834 5.84682 5.99262 6.19175 6.20185 6.31148 6.46795 6.61566 6.71330 7.00888 7.21670 7.46479 7.57441 7.65996 7.98935 8.22647 8.38567 9.06172 9.67440 10.15347 11.16392 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012329 B = 0.003269 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.575522 B = 8564.272658 C = 9805.860035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.266 4.266 4 H 0.070 0.930 5 C 0.008 3.992 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.289 1.289 10 H -0.282 1.282 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.151 4.151 14 C 0.106 3.894 15 N -0.607 5.607 16 C 0.536 3.464 17 O -0.541 6.541 18 C -0.120 4.120 19 H 0.109 0.891 20 C -0.106 4.106 21 C -0.034 4.034 22 C 0.193 3.807 23 N -0.275 5.275 24 N -0.288 5.288 25 C 0.354 3.646 26 O -0.433 6.433 27 N -0.480 5.480 28 C 0.119 3.881 29 C 0.072 3.928 30 H 0.029 0.971 31 H 0.049 0.951 32 H -0.003 1.003 33 H 0.255 0.745 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.406 0.594 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.061 0.939 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.805 -15.840 -6.912 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.306 5.306 3 C -0.395 4.395 4 H 0.088 0.912 5 C -0.191 4.191 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.209 1.209 9 H -0.215 1.215 10 H -0.208 1.208 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.192 4.192 14 C -0.016 4.016 15 N -0.340 5.340 16 C 0.323 3.677 17 O -0.418 6.418 18 C -0.142 4.142 19 H 0.127 0.873 20 C -0.144 4.144 21 C -0.073 4.073 22 C -0.074 4.074 23 N -0.117 5.117 24 N -0.139 5.139 25 C 0.050 3.950 26 O -0.233 6.233 27 N -0.183 5.183 28 C -0.005 4.005 29 C -0.053 4.053 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.016 0.984 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.263 0.737 43 H 0.114 0.886 44 H 0.124 0.876 45 H 0.079 0.921 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.171 -15.758 -8.029 17.819 hybrid contribution 1.251 0.940 1.364 2.076 sum 3.422 -14.818 -6.666 16.605 Atomic orbital electron populations 1.20808 0.82362 0.95868 0.99263 1.43865 1.01868 0.99795 1.85099 1.19168 0.98623 0.85336 1.36400 0.91222 1.25044 0.97531 0.98703 0.97802 1.70042 1.17755 1.27675 1.39419 0.86299 0.78609 0.83427 0.77966 1.20914 1.21521 1.20810 1.21255 0.96491 0.86007 0.89920 0.90210 1.23401 1.03020 0.92468 1.00268 1.22298 0.99498 0.99111 0.80719 1.48555 1.65046 1.07670 1.12713 1.19615 0.77336 0.83338 0.87427 1.90708 1.52910 1.25878 1.72351 1.21646 0.96866 1.02934 0.92764 0.87297 1.21569 1.01068 0.96731 0.95066 1.20345 0.91798 1.03304 0.91851 1.24687 0.89487 1.01467 0.91758 1.74023 1.11460 1.16818 1.09393 1.74853 1.00494 1.17423 1.21096 1.21821 0.88497 1.01335 0.83390 1.84942 1.09749 1.34086 1.94496 1.46606 1.14656 1.48720 1.08354 1.21858 0.97695 1.05242 0.75664 1.22981 1.02140 0.80373 0.99788 0.95240 0.93197 0.98434 0.93464 0.90576 0.90188 0.90854 0.91614 0.89988 0.88616 0.87263 0.88042 0.73684 0.88594 0.87577 0.92093 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.59 7.71 59.85 0.46 4.06 16 2 N -0.59 -13.04 2.94 -171.38 -0.50 -13.54 16 3 C -0.27 -6.69 9.62 -15.06 -0.14 -6.84 16 4 H 0.07 1.70 7.83 -52.48 -0.41 1.29 16 5 C 0.01 0.22 5.13 -17.43 -0.09 0.13 16 6 N -0.91 -24.79 10.60 55.49 0.59 -24.21 16 7 Si 0.91 20.69 29.57 -169.99 -5.03 15.66 16 8 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 C 0.17 3.01 3.42 -66.09 -0.23 2.78 16 12 H 0.08 1.37 7.93 -51.93 -0.41 0.95 16 13 C -0.15 -2.34 6.65 -24.58 -0.16 -2.51 16 14 C 0.11 1.40 6.93 -2.53 -0.02 1.39 16 15 N -0.61 -7.97 3.33 -170.52 -0.57 -8.53 16 16 C 0.54 6.71 6.98 -10.98 -0.08 6.64 16 17 O -0.54 -8.23 16.37 5.56 0.09 -8.13 16 18 C -0.12 -1.16 1.95 -91.51 -0.18 -1.34 16 19 H 0.11 1.06 7.49 -51.93 -0.39 0.67 16 20 C -0.11 -0.87 4.59 -26.42 -0.12 -0.99 16 21 C -0.03 -0.26 6.34 -27.59 -0.17 -0.43 16 22 C 0.19 2.18 7.78 -154.44 -1.20 0.97 16 23 N -0.28 -3.90 12.17 32.93 0.40 -3.49 16 24 N -0.29 -4.24 12.24 29.53 0.36 -3.88 16 25 C 0.35 4.29 9.30 -89.28 -0.83 3.46 16 26 O -0.43 -4.11 13.64 -18.29 -0.25 -4.36 16 27 N -0.48 -5.17 3.16 -115.36 -0.36 -5.54 16 28 C 0.12 1.07 6.32 -4.01 -0.03 1.05 16 29 C 0.07 1.02 5.80 -3.06 -0.02 1.00 16 30 H 0.03 0.72 7.50 -51.93 -0.39 0.33 16 31 H 0.05 1.23 7.11 -51.93 -0.37 0.86 16 32 H 0.00 -0.05 6.25 -51.93 -0.32 -0.38 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.08 1.31 7.28 -51.93 -0.38 0.93 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 0.98 8.00 -51.93 -0.42 0.57 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 39 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.41 1.56 9.06 45.56 0.41 1.97 16 43 H 0.10 0.77 8.12 -51.93 -0.42 0.34 16 44 H 0.11 0.96 6.75 -51.92 -0.35 0.61 16 45 H 0.06 0.78 6.75 -51.93 -0.35 0.43 16 46 H 0.08 1.16 5.91 -51.93 -0.31 0.86 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -32.83 366.91 -8.32 -41.15 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.77 Total: -0.01 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -2.81 Total: 9.36 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.09 Total: -59.19 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.16 Total: -12.50 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.83 -8.32 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971816996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.640 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds